EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000010641 (Gene tree)
Gene ID: 113134501
Gene Symbol: prpf38b
Alias: wu:fc43b05|zgc:63496
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 5058 bases
Position: chrOOHQ01000035.1:12095006-12100063
Accession: 113134501
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000015678	PRP38	PF03371.15	1e-54	1	1
ENSMAMP00000015686	PRP38	PF03371.15	1.9e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000016115	-	2927	-	ENSMAMP00000015686	189 (aa)	-	-
ENSMAMT00000016107	-	2412	XM_026313906	ENSMAMP00000015678	469 (aa)	XP_026169691	UPI000E4589F4

Gene Model

Click here to download ENSMAMG00000010641's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000010641's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000010641	prpf38b	100	91.507	ENSAPOG00000005297	prpf38b	100	92.144	Acanthochromis_polyacanthus
ENSMAMG00000010641	prpf38b	100	91.507	ENSAPOG00000012791	-	100	92.144	Acanthochromis_polyacanthus
ENSMAMG00000010641	prpf38b	100	91.083	ENSAOCG00000012675	prpf38b	91	92.144	Amphiprion_ocellaris
ENSMAMG00000010641	prpf38b	94	97.740	ENSAPEG00000010974	prpf38b	100	97.740	Amphiprion_percula
ENSMAMG00000010641	prpf38b	98	92.810	ENSACLG00000001712	prpf38b	98	92.593	Astatotilapia_calliptera
ENSMAMG00000010641	prpf38b	87	89.024	ENSDARG00000053101	prpf38b	95	89.024	Danio_rerio
ENSMAMG00000010641	prpf38b	100	82.942	ENSFHEG00000002861	prpf38b	100	84.222	Fundulus_heteroclitus
ENSMAMG00000010641	prpf38b	88	95.783	ENSGACG00000015154	prpf38b	100	85.744	Gasterosteus_aculeatus
ENSMAMG00000010641	prpf38b	98	92.810	ENSHBUG00000022496	prpf38b	98	92.810	Haplochromis_burtoni
ENSMAMG00000010641	prpf38b	81	96.104	ENSIPUG00000014942	prpf38b	97	62.419	Ictalurus_punctatus
ENSMAMG00000010641	prpf38b	98	94.086	ENSLBEG00000024500	prpf38b	100	94.086	Labrus_bergylta
ENSMAMG00000010641	prpf38b	98	92.810	ENSMZEG00005025536	prpf38b	98	92.593	Maylandia_zebra
ENSMAMG00000010641	prpf38b	98	92.810	ENSPNYG00000007625	prpf38b	98	92.810	Pundamilia_nyererei
ENSMAMG00000010641	prpf38b	100	93.830	ENSSPAG00000023160	-	100	93.830	Stegastes_partitus