EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000010683 (Gene tree)
Gene ID: 113136398
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 17090 bases
Position: chrOOHQ01000011.1:8008301-8025390
Accession: 113136398
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000015789	EST1	PF10374.9	3.2e-24	1	1
ENSMAMP00000015811	EST1	PF10374.9	3.5e-24	1	1
ENSMAMP00000015789	EST1_DNA_bind	PF10373.9	1.5e-39	1	1
ENSMAMP00000015811	EST1_DNA_bind	PF10373.9	1.7e-39	1	1
ENSMAMP00000015811	PIN_4	PF13638.6	1.1e-07	1	1
ENSMAMP00000015789	PIN_4	PF13638.6	7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000016243	-	5141	XM_026317193	ENSMAMP00000015811	1121 (aa)	XP_026172978	UPI000E456032
ENSMAMT00000016221	-	5454	-	ENSMAMP00000015789	1058 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000010683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000010683's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000010683	smg5	100	92.117	ENSAPOG00000019690	smg5	100	91.940	Acanthochromis_polyacanthus
ENSMAMG00000010683	smg5	100	59.322	ENSAMEG00000014458	SMG5	100	59.946	Ailuropoda_melanoleuca
ENSMAMG00000010683	smg5	100	83.452	ENSACIG00000001353	smg5	99	82.562	Amphilophus_citrinellus
ENSMAMG00000010683	smg5	100	92.889	ENSAOCG00000019483	smg5	100	92.444	Amphiprion_ocellaris
ENSMAMG00000010683	smg5	100	92.800	ENSAPEG00000022949	smg5	100	92.444	Amphiprion_percula
ENSMAMG00000010683	smg5	100	91.706	ENSATEG00000005348	smg5	100	91.637	Anabas_testudineus
ENSMAMG00000010683	smg5	100	63.492	ENSAPLG00000010263	SMG5	100	62.657	Anas_platyrhynchos
ENSMAMG00000010683	smg5	58	56.260	ENSANAG00000032899	SMG5	99	61.106	Aotus_nancymaae
ENSMAMG00000010683	smg5	100	88.308	ENSACLG00000009311	smg5	100	88.397	Astatotilapia_calliptera
ENSMAMG00000010683	smg5	100	78.610	ENSAMXG00000024616	smg5	100	77.876	Astyanax_mexicanus
ENSMAMG00000010683	smg5	58	55.772	ENSBTAG00000009435	SMG5	99	61.820	Bos_taurus
ENSMAMG00000010683	smg5	99	43.137	ENSBTAG00000021747	-	92	50.367	Bos_taurus
ENSMAMG00000010683	smg5	58	56.423	ENSCJAG00000005684	SMG5	99	61.106	Callithrix_jacchus
ENSMAMG00000010683	smg5	99	60.286	ENSCAFG00000016839	SMG5	99	60.286	Canis_familiaris
ENSMAMG00000010683	smg5	99	60.286	ENSCAFG00020006061	SMG5	99	60.286	Canis_lupus_dingo
ENSMAMG00000010683	smg5	100	60.586	ENSCHIG00000007709	SMG5	99	61.909	Capra_hircus
ENSMAMG00000010683	smg5	85	54.598	ENSCHIG00000006323	-	92	50.623	Capra_hircus
ENSMAMG00000010683	smg5	92	79.444	ENSTSYG00000004099	SMG5	99	61.106	Carlito_syrichta
ENSMAMG00000010683	smg5	100	50.000	ENSCAPG00000003631	SMG5	100	46.623	Cavia_aperea
ENSMAMG00000010683	smg5	100	61.815	ENSCPOG00000015696	SMG5	99	62.177	Cavia_porcellus
ENSMAMG00000010683	smg5	58	56.423	ENSCCAG00000027409	SMG5	99	60.928	Cebus_capucinus
ENSMAMG00000010683	smg5	58	56.585	ENSCATG00000030539	SMG5	99	61.106	Cercocebus_atys
ENSMAMG00000010683	smg5	100	60.302	ENSCLAG00000003983	SMG5	99	61.998	Chinchilla_lanigera
ENSMAMG00000010683	smg5	58	56.585	ENSCSAG00000002120	SMG5	99	61.106	Chlorocebus_sabaeus
ENSMAMG00000010683	smg5	51	76.895	ENSCHOG00000008741	-	57	76.895	Choloepus_hoffmanni
ENSMAMG00000010683	smg5	100	61.767	ENSCPBG00000025848	SMG5	100	61.781	Chrysemys_picta_bellii
ENSMAMG00000010683	smg5	75	37.905	ENSCING00000008706	-	91	37.905	Ciona_intestinalis
ENSMAMG00000010683	smg5	100	60.681	ENSCGRG00001006336	Smg5	99	61.091	Cricetulus_griseus_chok1gshd
ENSMAMG00000010683	smg5	100	60.681	ENSCGRG00000005111	Smg5	100	60.965	Cricetulus_griseus_crigri
ENSMAMG00000010683	smg5	100	85.485	ENSCSEG00000014220	smg5	100	85.574	Cynoglossus_semilaevis
ENSMAMG00000010683	smg5	100	72.014	ENSCVAG00000000529	smg5	99	71.836	Cyprinodon_variegatus
ENSMAMG00000010683	smg5	100	77.482	ENSDARG00000041481	smg5	100	76.258	Danio_rerio
ENSMAMG00000010683	smg5	83	39.883	ENSDNOG00000039862	-	94	40.164	Dasypus_novemcinctus
ENSMAMG00000010683	smg5	58	56.046	ENSDNOG00000000051	SMG5	99	58.007	Dasypus_novemcinctus
ENSMAMG00000010683	smg5	100	61.626	ENSDORG00000010382	Smg5	99	61.106	Dipodomys_ordii
ENSMAMG00000010683	smg5	75	85.437	ENSETEG00000010336	SMG5	81	85.437	Echinops_telfairi
ENSMAMG00000010683	smg5	63	53.713	ENSEBUG00000003739	smg5	88	53.350	Eptatretus_burgeri
ENSMAMG00000010683	smg5	100	60.397	ENSEASG00005019122	SMG5	99	61.017	Equus_asinus_asinus
ENSMAMG00000010683	smg5	100	60.208	ENSECAG00000001389	SMG5	99	60.839	Equus_caballus
ENSMAMG00000010683	smg5	66	79.887	ENSEEUG00000012690	SMG5	75	79.320	Erinaceus_europaeus
ENSMAMG00000010683	smg5	100	81.521	ENSELUG00000012585	smg5	100	80.354	Esox_lucius
ENSMAMG00000010683	smg5	100	59.830	ENSFCAG00000011783	SMG5	99	60.644	Felis_catus
ENSMAMG00000010683	smg5	59	64.618	ENSFALG00000001166	-	96	62.219	Ficedula_albicollis
ENSMAMG00000010683	smg5	100	61.248	ENSFDAG00000017388	SMG5	100	61.692	Fukomys_damarensis
ENSMAMG00000010683	smg5	90	89.524	ENSFHEG00000013939	smg5	95	89.524	Fundulus_heteroclitus
ENSMAMG00000010683	smg5	100	77.320	ENSGMOG00000007310	smg5	100	77.145	Gadus_morhua
ENSMAMG00000010683	smg5	100	62.849	ENSGALG00000029918	-	99	62.621	Gallus_gallus
ENSMAMG00000010683	smg5	95	89.137	ENSGAFG00000021691	smg5	99	89.137	Gambusia_affinis
ENSMAMG00000010683	smg5	100	86.726	ENSGACG00000013142	smg5	100	86.106	Gasterosteus_aculeatus
ENSMAMG00000010683	smg5	100	63.025	ENSGAGG00000016131	SMG5	99	62.862	Gopherus_agassizii
ENSMAMG00000010683	smg5	58	56.699	ENSGGOG00000010932	SMG5	99	60.928	Gorilla_gorilla
ENSMAMG00000010683	smg5	100	88.387	ENSHBUG00000008654	smg5	100	88.741	Haplochromis_burtoni
ENSMAMG00000010683	smg5	100	60.487	ENSHGLG00000019152	SMG5	99	60.660	Heterocephalus_glaber_female
ENSMAMG00000010683	smg5	91	61.868	ENSHGLG00100015948	SMG5	99	61.002	Heterocephalus_glaber_male
ENSMAMG00000010683	smg5	83	83.611	ENSHCOG00000010229	smg5	95	83.333	Hippocampus_comes
ENSMAMG00000010683	smg5	100	77.462	ENSIPUG00000006624	Smg5	100	77.374	Ictalurus_punctatus
ENSMAMG00000010683	smg5	100	60.113	ENSSTOG00000001780	SMG5	54	55.935	Ictidomys_tridecemlineatus
ENSMAMG00000010683	smg5	100	61.815	ENSJJAG00000022763	Smg5	99	61.463	Jaculus_jaculus
ENSMAMG00000010683	smg5	100	88.188	ENSKMAG00000014586	smg5	100	88.099	Kryptolebias_marmoratus
ENSMAMG00000010683	smg5	100	89.146	ENSLBEG00000002145	smg5	100	89.324	Labrus_bergylta
ENSMAMG00000010683	smg5	100	57.792	ENSLACG00000010521	SMG5	99	56.816	Latimeria_chalumnae
ENSMAMG00000010683	smg5	100	68.833	ENSLOCG00000008380	smg5	99	72.322	Lepisosteus_oculatus
ENSMAMG00000010683	smg5	100	60.623	ENSLAFG00000006241	SMG5	99	60.823	Loxodonta_africana
ENSMAMG00000010683	smg5	58	56.585	ENSMFAG00000045357	SMG5	99	61.106	Macaca_fascicularis
ENSMAMG00000010683	smg5	92	79.444	ENSMMUG00000000090	SMG5	99	60.749	Macaca_mulatta
ENSMAMG00000010683	smg5	58	56.423	ENSMNEG00000044425	SMG5	99	61.017	Macaca_nemestrina
ENSMAMG00000010683	smg5	92	69.031	ENSMLEG00000041192	SMG5	99	56.000	Mandrillus_leucophaeus
ENSMAMG00000010683	smg5	100	78.667	ENSMZEG00005015815	smg5	99	78.667	Maylandia_zebra
ENSMAMG00000010683	smg5	70	75.439	ENSMZEG00005016543	smg5	100	76.383	Maylandia_zebra
ENSMAMG00000010683	smg5	100	61.437	ENSMAUG00000010381	Smg5	99	61.270	Mesocricetus_auratus
ENSMAMG00000010683	smg5	58	55.935	ENSMICG00000002257	SMG5	99	61.807	Microcebus_murinus
ENSMAMG00000010683	smg5	100	60.907	ENSMOCG00000016590	Smg5	99	61.002	Microtus_ochrogaster
ENSMAMG00000010683	smg5	100	85.182	ENSMMOG00000017199	smg5	100	85.803	Mola_mola
ENSMAMG00000010683	smg5	75	35.165	ENSMODG00000004735	-	86	34.501	Monodelphis_domestica
ENSMAMG00000010683	smg5	74	35.897	ENSMODG00000004532	-	83	35.222	Monodelphis_domestica
ENSMAMG00000010683	smg5	77	33.666	ENSMODG00000010675	-	90	34.963	Monodelphis_domestica
ENSMAMG00000010683	smg5	73	35.385	ENSMODG00000004511	-	79	35.280	Monodelphis_domestica
ENSMAMG00000010683	smg5	100	90.820	ENSMALG00000010375	smg5	100	89.840	Monopterus_albus
ENSMAMG00000010683	smg5	100	60.226	MGP_CAROLIEiJ_G0025163	Smg5	100	89.385	Mus_caroli
ENSMAMG00000010683	smg5	100	60.491	ENSMUSG00000001415	Smg5	99	89.385	Mus_musculus
ENSMAMG00000010683	smg5	100	60.491	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSMAMG00000010683	smg5	99	62.131	MGP_SPRETEiJ_G0026104	Smg5	100	89.385	Mus_spretus
ENSMAMG00000010683	smg5	92	77.222	ENSMPUG00000004546	SMG5	100	58.790	Mustela_putorius_furo
ENSMAMG00000010683	smg5	100	61.248	ENSMLUG00000008518	SMG5	99	60.749	Myotis_lucifugus
ENSMAMG00000010683	smg5	77	53.179	ENSNGAG00000012101	-	92	49.877	Nannospalax_galili
ENSMAMG00000010683	smg5	100	61.734	ENSNGAG00000020706	Smg5	99	61.918	Nannospalax_galili
ENSMAMG00000010683	smg5	97	75.919	ENSNBRG00000004332	smg5	97	75.643	Neolamprologus_brichardi
ENSMAMG00000010683	smg5	58	56.699	ENSNLEG00000012439	SMG5	99	61.017	Nomascus_leucogenys
ENSMAMG00000010683	smg5	100	61.626	ENSOPRG00000009152	SMG5	99	61.820	Ochotona_princeps
ENSMAMG00000010683	smg5	99	61.627	ENSODEG00000012237	SMG5	99	61.909	Octodon_degus
ENSMAMG00000010683	smg5	100	88.642	ENSONIG00000008632	smg5	100	88.731	Oreochromis_niloticus
ENSMAMG00000010683	smg5	76	48.711	ENSOCUG00000023338	-	86	45.500	Oryctolagus_cuniculus
ENSMAMG00000010683	smg5	100	84.164	ENSORLG00000016239	smg5	100	84.220	Oryzias_latipes
ENSMAMG00000010683	smg5	100	83.911	ENSORLG00020013127	smg5	100	84.206	Oryzias_latipes_hni
ENSMAMG00000010683	smg5	100	84.342	ENSORLG00015019014	smg5	100	84.253	Oryzias_latipes_hsok
ENSMAMG00000010683	smg5	84	84.289	ENSOMEG00000021330	smg5	93	84.767	Oryzias_melastigma
ENSMAMG00000010683	smg5	58	54.797	ENSOGAG00000004966	SMG5	99	60.555	Otolemur_garnettii
ENSMAMG00000010683	smg5	100	60.491	ENSOARG00000005778	SMG5	99	61.909	Ovis_aries
ENSMAMG00000010683	smg5	99	43.249	ENSOARG00000011963	-	92	50.852	Ovis_aries
ENSMAMG00000010683	smg5	58	56.863	ENSPPAG00000011996	SMG5	99	60.928	Pan_paniscus
ENSMAMG00000010683	smg5	100	60.000	ENSPPRG00000011901	SMG5	100	60.273	Panthera_pardus
ENSMAMG00000010683	smg5	99	56.274	ENSPTIG00000007892	SMG5	98	56.737	Panthera_tigris_altaica
ENSMAMG00000010683	smg5	87	78.846	ENSPTRG00000049282	-	86	78.531	Pan_troglodytes
ENSMAMG00000010683	smg5	58	56.863	ENSPTRG00000023925	SMG5	99	60.928	Pan_troglodytes
ENSMAMG00000010683	smg5	58	56.585	ENSPANG00000011201	SMG5	99	61.106	Papio_anubis
ENSMAMG00000010683	smg5	100	76.649	ENSPKIG00000009402	smg5	100	76.292	Paramormyrops_kingsleyae
ENSMAMG00000010683	smg5	100	63.336	ENSPSIG00000015198	SMG5	100	63.587	Pelodiscus_sinensis
ENSMAMG00000010683	smg5	100	72.242	ENSPMGG00000010465	smg5	100	71.492	Periophthalmus_magnuspinnatus
ENSMAMG00000010683	smg5	100	61.437	ENSPEMG00000001819	Smg5	99	61.091	Peromyscus_maniculatus_bairdii
ENSMAMG00000010683	smg5	84	62.069	ENSPMAG00000000410	smg5	99	46.743	Petromyzon_marinus
ENSMAMG00000010683	smg5	100	62.193	ENSPCIG00000018938	SMG5	99	61.862	Phascolarctos_cinereus
ENSMAMG00000010683	smg5	100	86.643	ENSPFOG00000010191	smg5	100	86.554	Poecilia_formosa
ENSMAMG00000010683	smg5	100	86.643	ENSPLAG00000009332	smg5	100	86.554	Poecilia_latipinna
ENSMAMG00000010683	smg5	100	86.643	ENSPMEG00000014105	smg5	100	86.465	Poecilia_mexicana
ENSMAMG00000010683	smg5	100	86.999	ENSPREG00000017713	smg5	100	86.910	Poecilia_reticulata
ENSMAMG00000010683	smg5	58	56.863	ENSPPYG00000000723	SMG5	99	61.017	Pongo_abelii
ENSMAMG00000010683	smg5	58	55.935	ENSPCOG00000004741	SMG5	99	60.823	Propithecus_coquereli
ENSMAMG00000010683	smg5	93	65.654	ENSPVAG00000016748	SMG5	99	55.219	Pteropus_vampyrus
ENSMAMG00000010683	smg5	100	87.898	ENSPNYG00000013397	smg5	100	88.251	Pundamilia_nyererei
ENSMAMG00000010683	smg5	100	78.591	ENSPNAG00000028363	smg5	100	77.966	Pygocentrus_nattereri
ENSMAMG00000010683	smg5	99	62.165	ENSRNOG00000019590	Smg5	99	61.002	Rattus_norvegicus
ENSMAMG00000010683	smg5	58	56.585	ENSRBIG00000027428	SMG5	99	61.195	Rhinopithecus_bieti
ENSMAMG00000010683	smg5	58	56.423	ENSRROG00000030035	SMG5	99	61.106	Rhinopithecus_roxellana
ENSMAMG00000010683	smg5	58	56.423	ENSSBOG00000033339	SMG5	99	61.017	Saimiri_boliviensis_boliviensis
ENSMAMG00000010683	smg5	100	61.069	ENSSHAG00000014163	SMG5	100	61.191	Sarcophilus_harrisii
ENSMAMG00000010683	smg5	50	37.692	ENSSHAG00000000935	-	78	37.179	Sarcophilus_harrisii
ENSMAMG00000010683	smg5	69	38.081	ENSSHAG00000000561	-	88	37.179	Sarcophilus_harrisii
ENSMAMG00000010683	smg5	77	38.095	ENSSHAG00000009572	-	87	38.095	Sarcophilus_harrisii
ENSMAMG00000010683	smg5	100	75.776	ENSSFOG00015024175	smg5	100	76.549	Scleropages_formosus
ENSMAMG00000010683	smg5	100	90.480	ENSSMAG00000013059	smg5	100	90.311	Scophthalmus_maximus
ENSMAMG00000010683	smg5	100	92.301	ENSSDUG00000007122	smg5	100	91.681	Seriola_dumerili
ENSMAMG00000010683	smg5	100	92.274	ENSSLDG00000011418	smg5	100	92.362	Seriola_lalandi_dorsalis
ENSMAMG00000010683	smg5	63	70.144	ENSSARG00000012484	SMG5	94	70.144	Sorex_araneus
ENSMAMG00000010683	smg5	100	61.963	ENSSPUG00000002260	SMG5	100	61.495	Sphenodon_punctatus
ENSMAMG00000010683	smg5	100	90.531	ENSSPAG00000014266	smg5	100	90.796	Stegastes_partitus
ENSMAMG00000010683	smg5	100	59.546	ENSSSCG00000006490	-	100	60.019	Sus_scrofa
ENSMAMG00000010683	smg5	100	47.921	ENSSSCG00000039308	-	99	47.242	Sus_scrofa
ENSMAMG00000010683	smg5	100	62.921	ENSTGUG00000003748	-	99	62.533	Taeniopygia_guttata
ENSMAMG00000010683	smg5	100	81.947	ENSTRUG00000012580	smg5	100	81.770	Takifugu_rubripes
ENSMAMG00000010683	smg5	100	82.026	ENSTNIG00000010303	smg5	100	81.938	Tetraodon_nigroviridis
ENSMAMG00000010683	smg5	55	85.714	ENSTBEG00000002777	SMG5	58	85.714	Tupaia_belangeri
ENSMAMG00000010683	smg5	100	59.168	ENSTTRG00000001401	SMG5	99	57.270	Tursiops_truncatus
ENSMAMG00000010683	smg5	100	59.040	ENSUAMG00000013721	SMG5	99	59.893	Ursus_americanus
ENSMAMG00000010683	smg5	96	72.135	ENSUMAG00000018041	SMG5	99	72.072	Ursus_maritimus
ENSMAMG00000010683	smg5	50	77.676	ENSVPAG00000009446	SMG5	99	53.594	Vicugna_pacos
ENSMAMG00000010683	smg5	99	60.286	ENSVVUG00000005887	SMG5	99	60.197	Vulpes_vulpes
ENSMAMG00000010683	smg5	84	53.803	ENSXETG00000033791	SMG5	99	52.908	Xenopus_tropicalis
ENSMAMG00000010683	smg5	92	91.351	ENSXCOG00000004379	smg5	100	91.351	Xiphophorus_couchianus
ENSMAMG00000010683	smg5	100	86.109	ENSXMAG00000013499	smg5	100	86.020	Xiphophorus_maculatus