EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000011034 (Gene tree)
Gene ID: 113139453
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 4421 bases
Position: chrOOHQ01000039.1:9842579-9846999
Accession: 113139453
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000016290	SMN	PF06003.12	2.3e-109	1	1
ENSMAMP00000016283	SMN	PF06003.12	1.2e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000016731	-	2104	-	ENSMAMP00000016290	284 (aa)	XP_026178472	UPI000E4548B4
ENSMAMT00000016724	-	2353	-	ENSMAMP00000016283	299 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000011034's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000011034's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000011034	smn1	94	51.087	ENSG00000172062	SMN1	92	51.880	Homo_sapiens
ENSMAMG00000011034	smn1	94	51.087	ENSG00000205571	SMN2	74	70.588	Homo_sapiens
ENSMAMG00000011034	smn1	100	82.394	ENSAPOG00000011324	smn1	100	83.803	Acanthochromis_polyacanthus
ENSMAMG00000011034	smn1	94	52.536	ENSAMEG00000003316	-	89	52.688	Ailuropoda_melanoleuca
ENSMAMG00000011034	smn1	60	79.412	ENSACIG00000007598	smn1	94	80.000	Amphilophus_citrinellus
ENSMAMG00000011034	smn1	93	79.167	ENSACIG00000019772	-	99	79.167	Amphilophus_citrinellus
ENSMAMG00000011034	smn1	100	82.394	ENSAOCG00000024444	smn1	100	83.451	Amphiprion_ocellaris
ENSMAMG00000011034	smn1	100	82.746	ENSAPEG00000016504	smn1	100	83.803	Amphiprion_percula
ENSMAMG00000011034	smn1	95	85.185	ENSATEG00000002182	smn1	87	83.099	Anabas_testudineus
ENSMAMG00000011034	smn1	69	46.117	ENSAPLG00000010912	-	96	50.990	Anas_platyrhynchos
ENSMAMG00000011034	smn1	98	54.545	ENSACAG00000010017	-	96	53.846	Anolis_carolinensis
ENSMAMG00000011034	smn1	96	39.716	ENSANAG00000032133	-	95	51.773	Aotus_nancymaae
ENSMAMG00000011034	smn1	99	79.643	ENSACLG00000007308	smn1	99	77.740	Astatotilapia_calliptera
ENSMAMG00000011034	smn1	100	58.803	ENSAMXG00000013884	smn1	100	65.614	Astyanax_mexicanus
ENSMAMG00000011034	smn1	94	51.282	ENSBTAG00000005743	SMN2	93	50.883	Bos_taurus
ENSMAMG00000011034	smn1	58	60.947	ENSCJAG00000016290	-	91	53.676	Callithrix_jacchus
ENSMAMG00000011034	smn1	94	50.549	ENSCAFG00000007812	SMN	92	49.104	Canis_familiaris
ENSMAMG00000011034	smn1	94	50.549	ENSCAFG00020019229	-	91	47.279	Canis_lupus_dingo
ENSMAMG00000011034	smn1	94	52.381	ENSCHIG00000015559	-	91	50.365	Capra_hircus
ENSMAMG00000011034	smn1	94	52.899	ENSTSYG00000012058	-	93	52.518	Carlito_syrichta
ENSMAMG00000011034	smn1	73	42.857	ENSCAPG00000011021	-	88	44.878	Cavia_aperea
ENSMAMG00000011034	smn1	94	50.174	ENSCPOG00000036973	-	91	50.000	Cavia_porcellus
ENSMAMG00000011034	smn1	94	50.173	ENSCPOG00000012328	-	92	49.640	Cavia_porcellus
ENSMAMG00000011034	smn1	58	59.763	ENSCCAG00000018127	-	91	52.747	Cebus_capucinus
ENSMAMG00000011034	smn1	94	51.799	ENSCATG00000037002	-	92	52.632	Cercocebus_atys
ENSMAMG00000011034	smn1	94	50.896	ENSCLAG00000000284	-	92	50.000	Chinchilla_lanigera
ENSMAMG00000011034	smn1	94	52.174	ENSCSAG00000015688	-	91	53.285	Chlorocebus_sabaeus
ENSMAMG00000011034	smn1	50	60.959	ENSCHOG00000007346	-	100	49.804	Choloepus_hoffmanni
ENSMAMG00000011034	smn1	96	51.408	ENSCPBG00000010968	-	97	53.358	Chrysemys_picta_bellii
ENSMAMG00000011034	smn1	94	52.920	ENSCANG00000038242	-	93	51.331	Colobus_angolensis_palliatus
ENSMAMG00000011034	smn1	97	49.477	ENSCANG00000033324	-	94	48.611	Colobus_angolensis_palliatus
ENSMAMG00000011034	smn1	94	39.852	ENSCGRG00001016998	-	91	38.321	Cricetulus_griseus_chok1gshd
ENSMAMG00000011034	smn1	94	52.963	ENSCGRG00001017959	-	92	52.015	Cricetulus_griseus_chok1gshd
ENSMAMG00000011034	smn1	94	52.963	ENSCGRG00000007698	Smn1	92	52.015	Cricetulus_griseus_crigri
ENSMAMG00000011034	smn1	98	67.596	ENSCSEG00000015227	smn1	100	67.944	Cynoglossus_semilaevis
ENSMAMG00000011034	smn1	100	79.930	ENSCVAG00000007498	smn1	100	79.930	Cyprinodon_variegatus
ENSMAMG00000011034	smn1	100	60.403	ENSDARG00000018494	smn1	100	63.763	Danio_rerio
ENSMAMG00000011034	smn1	82	47.303	ENSDNOG00000007283	-	86	48.837	Dasypus_novemcinctus
ENSMAMG00000011034	smn1	94	44.326	ENSDORG00000007082	Smn1	92	44.238	Dipodomys_ordii
ENSMAMG00000011034	smn1	58	48.521	ENSETEG00000001406	-	89	47.895	Echinops_telfairi
ENSMAMG00000011034	smn1	96	39.057	ENSEBUG00000011902	smn1	68	39.303	Eptatretus_burgeri
ENSMAMG00000011034	smn1	55	49.689	ENSEASG00005018000	-	89	43.182	Equus_asinus_asinus
ENSMAMG00000011034	smn1	58	57.059	ENSECAG00000015215	-	92	49.817	Equus_caballus
ENSMAMG00000011034	smn1	88	47.727	ENSEEUG00000015777	-	100	47.547	Erinaceus_europaeus
ENSMAMG00000011034	smn1	100	65.845	ENSELUG00000018067	smn1	100	65.493	Esox_lucius
ENSMAMG00000011034	smn1	94	52.206	ENSFCAG00000028292	SMN	92	52.015	Felis_catus
ENSMAMG00000011034	smn1	95	54.348	ENSFALG00000012320	-	95	53.137	Ficedula_albicollis
ENSMAMG00000011034	smn1	94	45.652	ENSFDAG00000017683	-	92	50.538	Fukomys_damarensis
ENSMAMG00000011034	smn1	97	80.505	ENSFHEG00000018508	smn1	100	80.505	Fundulus_heteroclitus
ENSMAMG00000011034	smn1	100	63.380	ENSGMOG00000017279	smn1	98	64.789	Gadus_morhua
ENSMAMG00000011034	smn1	95	51.613	ENSGALG00000002430	SMN	97	51.751	Gallus_gallus
ENSMAMG00000011034	smn1	100	80.634	ENSGAFG00000009501	smn1	100	80.634	Gambusia_affinis
ENSMAMG00000011034	smn1	100	79.930	ENSGACG00000010584	smn1	97	79.225	Gasterosteus_aculeatus
ENSMAMG00000011034	smn1	96	50.896	ENSGAGG00000011374	-	95	53.901	Gopherus_agassizii
ENSMAMG00000011034	smn1	77	35.565	ENSGAGG00000013639	-	92	37.799	Gopherus_agassizii
ENSMAMG00000011034	smn1	54	62.025	ENSGGOG00000026704	-	85	56.667	Gorilla_gorilla
ENSMAMG00000011034	smn1	54	62.025	ENSGGOG00000003872	-	93	49.049	Gorilla_gorilla
ENSMAMG00000011034	smn1	100	83.099	ENSHBUG00000013987	smn1	100	82.394	Haplochromis_burtoni
ENSMAMG00000011034	smn1	94	50.542	ENSHGLG00000001018	-	91	50.903	Heterocephalus_glaber_female
ENSMAMG00000011034	smn1	94	47.826	ENSHGLG00000001905	-	94	48.201	Heterocephalus_glaber_female
ENSMAMG00000011034	smn1	94	50.542	ENSHGLG00100011252	-	91	50.903	Heterocephalus_glaber_male
ENSMAMG00000011034	smn1	92	47.778	ENSHGLG00100018676	-	96	48.162	Heterocephalus_glaber_male
ENSMAMG00000011034	smn1	94	75.940	ENSHCOG00000017136	smn1	99	70.134	Hippocampus_comes
ENSMAMG00000011034	smn1	100	63.415	ENSIPUG00000012580	smn1	89	63.066	Ictalurus_punctatus
ENSMAMG00000011034	smn1	91	51.321	ENSSTOG00000012288	-	93	52.290	Ictidomys_tridecemlineatus
ENSMAMG00000011034	smn1	50	51.748	ENSJJAG00000014853	-	92	48.087	Jaculus_jaculus
ENSMAMG00000011034	smn1	100	78.746	ENSKMAG00000007239	smn1	100	78.746	Kryptolebias_marmoratus
ENSMAMG00000011034	smn1	100	81.338	ENSLBEG00000022550	smn1	100	81.338	Labrus_bergylta
ENSMAMG00000011034	smn1	99	34.211	ENSLACG00000009808	-	95	32.997	Latimeria_chalumnae
ENSMAMG00000011034	smn1	98	30.634	ENSLOCG00000000801	-	94	30.496	Lepisosteus_oculatus
ENSMAMG00000011034	smn1	100	54.138	ENSLOCG00000011339	smn1	100	57.931	Lepisosteus_oculatus
ENSMAMG00000011034	smn1	94	51.418	ENSLAFG00000003425	-	89	52.500	Loxodonta_africana
ENSMAMG00000011034	smn1	94	47.601	ENSMFAG00000008812	-	91	47.970	Macaca_fascicularis
ENSMAMG00000011034	smn1	94	52.174	ENSMFAG00000031523	SMN1	95	51.685	Macaca_fascicularis
ENSMAMG00000011034	smn1	94	52.174	ENSMMUG00000020214	SMN1	92	53.383	Macaca_mulatta
ENSMAMG00000011034	smn1	94	47.232	ENSMMUG00000030594	-	91	46.209	Macaca_mulatta
ENSMAMG00000011034	smn1	76	38.462	ENSMNEG00000036423	-	78	39.109	Macaca_nemestrina
ENSMAMG00000011034	smn1	94	52.174	ENSMNEG00000035094	-	92	53.383	Macaca_nemestrina
ENSMAMG00000011034	smn1	94	52.174	ENSMLEG00000041902	-	93	53.383	Mandrillus_leucophaeus
ENSMAMG00000011034	smn1	100	83.451	ENSMZEG00005013634	smn1	100	82.746	Maylandia_zebra
ENSMAMG00000011034	smn1	69	48.485	ENSMGAG00000008889	-	95	46.465	Meleagris_gallopavo
ENSMAMG00000011034	smn1	94	51.852	ENSMAUG00000010262	Smn1	92	50.916	Mesocricetus_auratus
ENSMAMG00000011034	smn1	58	58.580	ENSMICG00000034708	-	81	56.667	Microcebus_murinus
ENSMAMG00000011034	smn1	94	52.593	ENSMOCG00000017833	Smn1	92	51.852	Microtus_ochrogaster
ENSMAMG00000011034	smn1	96	71.898	ENSMMOG00000005504	smn1	98	73.260	Mola_mola
ENSMAMG00000011034	smn1	96	51.408	ENSMODG00000001436	-	95	50.526	Monodelphis_domestica
ENSMAMG00000011034	smn1	100	88.380	ENSMALG00000008025	smn1	100	88.380	Monopterus_albus
ENSMAMG00000011034	smn1	94	51.625	MGP_CAROLIEiJ_G0018836	Smn1	92	52.574	Mus_caroli
ENSMAMG00000011034	smn1	94	51.625	ENSMUSG00000021645	Smn1	92	52.574	Mus_musculus
ENSMAMG00000011034	smn1	94	48.175	MGP_PahariEiJ_G0015911	Smn1	92	51.636	Mus_pahari
ENSMAMG00000011034	smn1	94	51.625	MGP_SPRETEiJ_G0019718	Smn1	92	52.574	Mus_spretus
ENSMAMG00000011034	smn1	92	51.292	ENSMPUG00000014470	-	93	52.809	Mustela_putorius_furo
ENSMAMG00000011034	smn1	94	51.399	ENSMLUG00000010603	-	88	50.896	Myotis_lucifugus
ENSMAMG00000011034	smn1	94	52.727	ENSNGAG00000019833	Smn1	92	52.015	Nannospalax_galili
ENSMAMG00000011034	smn1	100	84.859	ENSNBRG00000023000	smn1	100	84.859	Neolamprologus_brichardi
ENSMAMG00000011034	smn1	94	51.087	ENSNLEG00000004454	-	92	51.880	Nomascus_leucogenys
ENSMAMG00000011034	smn1	80	45.798	ENSMEUG00000011393	-	100	47.639	Notamacropus_eugenii
ENSMAMG00000011034	smn1	88	46.947	ENSOPRG00000002015	-	100	49.810	Ochotona_princeps
ENSMAMG00000011034	smn1	91	51.504	ENSODEG00000015976	-	92	50.929	Octodon_degus
ENSMAMG00000011034	smn1	100	84.155	ENSONIG00000011799	smn1	100	84.155	Oreochromis_niloticus
ENSMAMG00000011034	smn1	94	48.582	ENSOANG00000001626	-	95	48.727	Ornithorhynchus_anatinus
ENSMAMG00000011034	smn1	94	53.650	ENSOCUG00000017097	-	91	53.571	Oryctolagus_cuniculus
ENSMAMG00000011034	smn1	94	53.405	ENSOCUG00000026649	-	92	52.265	Oryctolagus_cuniculus
ENSMAMG00000011034	smn1	94	42.908	ENSOCUG00000025183	-	92	43.929	Oryctolagus_cuniculus
ENSMAMG00000011034	smn1	100	79.930	ENSORLG00000010552	smn1	100	79.930	Oryzias_latipes
ENSMAMG00000011034	smn1	100	74.386	ENSORLG00020007936	smn1	100	73.684	Oryzias_latipes_hni
ENSMAMG00000011034	smn1	100	79.930	ENSORLG00015022425	smn1	100	79.930	Oryzias_latipes_hsok
ENSMAMG00000011034	smn1	100	79.225	ENSOMEG00000007824	smn1	100	79.225	Oryzias_melastigma
ENSMAMG00000011034	smn1	91	48.529	ENSOGAG00000031414	-	92	44.906	Otolemur_garnettii
ENSMAMG00000011034	smn1	94	50.735	ENSOARG00000005425	-	97	48.897	Ovis_aries
ENSMAMG00000011034	smn1	94	51.087	ENSPPAG00000036640	-	92	51.880	Pan_paniscus
ENSMAMG00000011034	smn1	94	52.206	ENSPPRG00000005575	-	92	52.015	Panthera_pardus
ENSMAMG00000011034	smn1	94	52.381	ENSPTIG00000007745	-	92	52.364	Panthera_tigris_altaica
ENSMAMG00000011034	smn1	94	51.429	ENSPTRG00000016955	-	92	51.880	Pan_troglodytes
ENSMAMG00000011034	smn1	94	52.174	ENSPANG00000013601	-	91	53.285	Papio_anubis
ENSMAMG00000011034	smn1	94	48.339	ENSPANG00000000253	-	90	50.000	Papio_anubis
ENSMAMG00000011034	smn1	100	58.042	ENSPKIG00000011096	smn1	100	57.692	Paramormyrops_kingsleyae
ENSMAMG00000011034	smn1	92	51.087	ENSPSIG00000014787	-	83	52.612	Pelodiscus_sinensis
ENSMAMG00000011034	smn1	100	69.686	ENSPMGG00000012285	smn1	99	69.231	Periophthalmus_magnuspinnatus
ENSMAMG00000011034	smn1	92	42.238	ENSPMAG00000005004	smn1	91	37.918	Petromyzon_marinus
ENSMAMG00000011034	smn1	96	52.982	ENSPCIG00000025764	-	96	51.579	Phascolarctos_cinereus
ENSMAMG00000011034	smn1	100	80.282	ENSPFOG00000007786	smn1	100	80.282	Poecilia_formosa
ENSMAMG00000011034	smn1	100	80.634	ENSPLAG00000012071	smn1	100	80.634	Poecilia_latipinna
ENSMAMG00000011034	smn1	100	80.282	ENSPMEG00000017085	smn1	100	80.282	Poecilia_mexicana
ENSMAMG00000011034	smn1	100	80.282	ENSPREG00000005824	smn1	100	80.282	Poecilia_reticulata
ENSMAMG00000011034	smn1	88	39.600	ENSPPYG00000019189	-	74	48.276	Pongo_abelii
ENSMAMG00000011034	smn1	92	50.185	ENSPPYG00000015533	-	95	50.187	Pongo_abelii
ENSMAMG00000011034	smn1	91	51.493	ENSPCAG00000004187	-	97	48.929	Procavia_capensis
ENSMAMG00000011034	smn1	57	54.819	ENSPCOG00000022307	-	75	54.819	Propithecus_coquereli
ENSMAMG00000011034	smn1	94	52.174	ENSPVAG00000005977	-	91	52.381	Pteropus_vampyrus
ENSMAMG00000011034	smn1	100	84.859	ENSPNYG00000014148	smn1	100	84.859	Pundamilia_nyererei
ENSMAMG00000011034	smn1	100	64.236	ENSPNAG00000014007	smn1	87	65.972	Pygocentrus_nattereri
ENSMAMG00000011034	smn1	94	50.725	ENSRNOG00000018067	Smn1	92	51.111	Rattus_norvegicus
ENSMAMG00000011034	smn1	94	52.174	ENSRBIG00000037052	-	91	52.920	Rhinopithecus_bieti
ENSMAMG00000011034	smn1	97	46.786	ENSRBIG00000036775	-	93	46.786	Rhinopithecus_bieti
ENSMAMG00000011034	smn1	96	50.352	ENSRROG00000039399	-	94	51.064	Rhinopithecus_roxellana
ENSMAMG00000011034	smn1	94	47.970	ENSRROG00000031088	-	91	47.925	Rhinopithecus_roxellana
ENSMAMG00000011034	smn1	58	60.947	ENSSBOG00000011665	-	91	53.676	Saimiri_boliviensis_boliviensis
ENSMAMG00000011034	smn1	55	56.522	ENSSBOG00000020112	-	60	54.651	Saimiri_boliviensis_boliviensis
ENSMAMG00000011034	smn1	96	52.982	ENSSHAG00000001499	-	97	50.365	Sarcophilus_harrisii
ENSMAMG00000011034	smn1	100	60.208	ENSSFOG00015015507	smn1	100	60.208	Scleropages_formosus
ENSMAMG00000011034	smn1	100	78.521	ENSSMAG00000007922	smn1	100	80.986	Scophthalmus_maximus
ENSMAMG00000011034	smn1	100	88.380	ENSSDUG00000018533	smn1	100	88.380	Seriola_dumerili
ENSMAMG00000011034	smn1	100	88.732	ENSSLDG00000021135	smn1	100	88.732	Seriola_lalandi_dorsalis
ENSMAMG00000011034	smn1	97	55.749	ENSSPUG00000000373	-	99	53.220	Sphenodon_punctatus
ENSMAMG00000011034	smn1	100	83.099	ENSSPAG00000004345	smn1	100	84.507	Stegastes_partitus
ENSMAMG00000011034	smn1	57	58.333	ENSSSCG00000029127	-	75	67.647	Sus_scrofa
ENSMAMG00000011034	smn1	94	50.903	ENSSSCG00000016970	-	91	52.747	Sus_scrofa
ENSMAMG00000011034	smn1	91	49.638	ENSTGUG00000001548	-	95	50.182	Taeniopygia_guttata
ENSMAMG00000011034	smn1	100	68.310	ENSTRUG00000000736	smn	100	69.366	Takifugu_rubripes
ENSMAMG00000011034	smn1	100	66.323	ENSTNIG00000009892	smn1	100	65.979	Tetraodon_nigroviridis
ENSMAMG00000011034	smn1	54	62.420	ENSTBEG00000002399	-	87	58.011	Tupaia_belangeri
ENSMAMG00000011034	smn1	54	60.897	ENSTTRG00000005080	-	91	53.091	Tursiops_truncatus
ENSMAMG00000011034	smn1	54	62.179	ENSUAMG00000024947	-	66	57.459	Ursus_americanus
ENSMAMG00000011034	smn1	94	52.536	ENSUMAG00000007842	-	69	53.846	Ursus_maritimus
ENSMAMG00000011034	smn1	59	80.000	ENSVPAG00000009887	-	61	80.000	Vicugna_pacos
ENSMAMG00000011034	smn1	94	50.549	ENSVVUG00000006934	-	92	49.104	Vulpes_vulpes
ENSMAMG00000011034	smn1	95	55.755	ENSXETG00000018189	smn2	95	50.345	Xenopus_tropicalis
ENSMAMG00000011034	smn1	100	79.577	ENSXMAG00000001521	smn1	100	79.577	Xiphophorus_maculatus