EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000011238 (Gene tree)
Gene ID: 113124441
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 12943 bases
Position: chrOOHQ01000107.1:40494149-40507091
Accession: ZDB-GENE-030131-5181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000016670	Npa1	PF11707.8	4.6e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000017116	-	6453	-	ENSMAMP00000016670	2150 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000011238's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000011238's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000011238	urb1	98	43.442	ENSG00000142207	URB1	99	43.163	Homo_sapiens
ENSMAMG00000011238	urb1	99	73.218	ENSAPOG00000020308	urb1	99	73.218	Acanthochromis_polyacanthus
ENSMAMG00000011238	urb1	99	42.476	ENSAMEG00000011998	URB1	99	42.969	Ailuropoda_melanoleuca
ENSMAMG00000011238	urb1	95	67.610	ENSACIG00000003248	urb1	97	67.610	Amphilophus_citrinellus
ENSMAMG00000011238	urb1	99	68.631	ENSAOCG00000010364	urb1	99	68.631	Amphiprion_ocellaris
ENSMAMG00000011238	urb1	99	70.139	ENSAPEG00000010758	urb1	99	70.139	Amphiprion_percula
ENSMAMG00000011238	urb1	99	74.164	ENSATEG00000011790	urb1	99	74.164	Anabas_testudineus
ENSMAMG00000011238	urb1	96	44.921	ENSAPLG00000012791	URB1	99	45.061	Anas_platyrhynchos
ENSMAMG00000011238	urb1	99	43.653	ENSACAG00000002817	URB1	99	43.583	Anolis_carolinensis
ENSMAMG00000011238	urb1	99	43.039	ENSANAG00000024617	URB1	99	43.220	Aotus_nancymaae
ENSMAMG00000011238	urb1	99	70.370	ENSACLG00000024865	urb1	99	70.459	Astatotilapia_calliptera
ENSMAMG00000011238	urb1	99	47.571	ENSAMXG00000012306	urb1	99	47.703	Astyanax_mexicanus
ENSMAMG00000011238	urb1	95	55.742	ENSBTAG00000012412	URB1	98	42.965	Bos_taurus
ENSMAMG00000011238	urb1	99	42.907	ENSCJAG00000009118	URB1	99	42.907	Callithrix_jacchus
ENSMAMG00000011238	urb1	99	42.459	ENSCAFG00000008892	URB1	99	42.502	Canis_familiaris
ENSMAMG00000011238	urb1	99	42.075	ENSCAFG00020025994	-	99	42.119	Canis_lupus_dingo
ENSMAMG00000011238	urb1	99	42.365	ENSCAFG00020025987	-	99	42.408	Canis_lupus_dingo
ENSMAMG00000011238	urb1	99	42.650	ENSCHIG00000015645	URB1	99	42.782	Capra_hircus
ENSMAMG00000011238	urb1	99	43.221	ENSTSYG00000013286	URB1	99	43.221	Carlito_syrichta
ENSMAMG00000011238	urb1	97	42.608	ENSCAPG00000015589	URB1	99	42.608	Cavia_aperea
ENSMAMG00000011238	urb1	99	43.145	ENSCPOG00000006748	URB1	99	43.145	Cavia_porcellus
ENSMAMG00000011238	urb1	99	43.259	ENSCCAG00000021299	URB1	99	43.440	Cebus_capucinus
ENSMAMG00000011238	urb1	99	43.612	ENSCATG00000042630	URB1	99	43.469	Cercocebus_atys
ENSMAMG00000011238	urb1	99	43.761	ENSCLAG00000005262	URB1	99	43.810	Chinchilla_lanigera
ENSMAMG00000011238	urb1	99	42.481	ENSCSAG00000009584	URB1	99	42.522	Chlorocebus_sabaeus
ENSMAMG00000011238	urb1	98	45.394	ENSCPBG00000006454	URB1	99	45.511	Chrysemys_picta_bellii
ENSMAMG00000011238	urb1	99	43.361	ENSCANG00000031088	URB1	99	43.395	Colobus_angolensis_palliatus
ENSMAMG00000011238	urb1	98	42.775	ENSCGRG00001010616	Urb1	99	42.776	Cricetulus_griseus_chok1gshd
ENSMAMG00000011238	urb1	97	43.081	ENSCGRG00000015840	Urb1	99	43.260	Cricetulus_griseus_crigri
ENSMAMG00000011238	urb1	99	65.310	ENSCSEG00000012616	urb1	99	65.310	Cynoglossus_semilaevis
ENSMAMG00000011238	urb1	95	64.597	ENSCVAG00000009076	urb1	98	66.667	Cyprinodon_variegatus
ENSMAMG00000011238	urb1	99	51.915	ENSDARG00000060308	urb1	99	51.915	Danio_rerio
ENSMAMG00000011238	urb1	84	46.570	ENSDNOG00000015586	URB1	99	46.519	Dasypus_novemcinctus
ENSMAMG00000011238	urb1	99	43.051	ENSDORG00000006735	Urb1	99	43.051	Dipodomys_ordii
ENSMAMG00000011238	urb1	83	52.399	ENSETEG00000009080	URB1	83	52.399	Echinops_telfairi
ENSMAMG00000011238	urb1	99	42.988	ENSEASG00005007711	URB1	99	45.669	Equus_asinus_asinus
ENSMAMG00000011238	urb1	94	56.548	ENSECAG00000013206	URB1	99	43.537	Equus_caballus
ENSMAMG00000011238	urb1	99	55.923	ENSELUG00000020516	urb1	99	55.923	Esox_lucius
ENSMAMG00000011238	urb1	99	42.495	ENSFCAG00000002177	URB1	99	42.632	Felis_catus
ENSMAMG00000011238	urb1	97	41.541	ENSFALG00000004636	URB1	99	41.541	Ficedula_albicollis
ENSMAMG00000011238	urb1	99	43.777	ENSFDAG00000007288	URB1	95	43.576	Fukomys_damarensis
ENSMAMG00000011238	urb1	99	62.378	ENSFHEG00000000202	urb1	99	63.899	Fundulus_heteroclitus
ENSMAMG00000011238	urb1	92	58.429	ENSGMOG00000001838	urb1	93	58.429	Gadus_morhua
ENSMAMG00000011238	urb1	98	44.799	ENSGALG00000015887	URB1	98	44.847	Gallus_gallus
ENSMAMG00000011238	urb1	99	64.254	ENSGAFG00000020694	urb1	99	64.254	Gambusia_affinis
ENSMAMG00000011238	urb1	99	70.807	ENSGACG00000011703	urb1	99	70.807	Gasterosteus_aculeatus
ENSMAMG00000011238	urb1	98	45.211	ENSGAGG00000022544	URB1	99	45.211	Gopherus_agassizii
ENSMAMG00000011238	urb1	99	43.223	ENSGGOG00000000285	URB1	99	43.227	Gorilla_gorilla
ENSMAMG00000011238	urb1	99	70.163	ENSHBUG00000001904	urb1	99	70.251	Haplochromis_burtoni
ENSMAMG00000011238	urb1	99	42.654	ENSHGLG00000004907	URB1	99	42.654	Heterocephalus_glaber_female
ENSMAMG00000011238	urb1	99	43.125	ENSHGLG00100010749	URB1	99	43.125	Heterocephalus_glaber_male
ENSMAMG00000011238	urb1	76	70.968	ENSHCOG00000018683	urb1	98	70.968	Hippocampus_comes
ENSMAMG00000011238	urb1	99	46.992	ENSIPUG00000014721	urb1	99	47.103	Ictalurus_punctatus
ENSMAMG00000011238	urb1	97	43.583	ENSSTOG00000004539	URB1	98	43.739	Ictidomys_tridecemlineatus
ENSMAMG00000011238	urb1	97	69.428	ENSKMAG00000006001	urb1	99	69.428	Kryptolebias_marmoratus
ENSMAMG00000011238	urb1	97	67.221	ENSLBEG00000027208	urb1	99	67.221	Labrus_bergylta
ENSMAMG00000011238	urb1	99	43.184	ENSLACG00000017059	URB1	100	43.313	Latimeria_chalumnae
ENSMAMG00000011238	urb1	99	51.004	ENSLOCG00000009190	urb1	99	51.004	Lepisosteus_oculatus
ENSMAMG00000011238	urb1	99	43.170	ENSLAFG00000010407	URB1	99	43.257	Loxodonta_africana
ENSMAMG00000011238	urb1	99	43.153	ENSMFAG00000034391	URB1	96	43.188	Macaca_fascicularis
ENSMAMG00000011238	urb1	99	43.636	ENSMMUG00000010295	URB1	99	43.667	Macaca_mulatta
ENSMAMG00000011238	urb1	99	42.580	ENSMNEG00000032981	URB1	99	42.576	Macaca_nemestrina
ENSMAMG00000011238	urb1	99	43.367	ENSMLEG00000041435	URB1	99	43.400	Mandrillus_leucophaeus
ENSMAMG00000011238	urb1	99	65.650	ENSMZEG00005011862	urb1	99	65.738	Maylandia_zebra
ENSMAMG00000011238	urb1	96	44.695	ENSMGAG00000014512	URB1	98	44.790	Meleagris_gallopavo
ENSMAMG00000011238	urb1	87	52.924	ENSMAUG00000010516	Urb1	95	52.047	Mesocricetus_auratus
ENSMAMG00000011238	urb1	99	43.362	ENSMICG00000016424	URB1	99	43.275	Microcebus_murinus
ENSMAMG00000011238	urb1	99	42.481	ENSMOCG00000012613	Urb1	99	42.650	Microtus_ochrogaster
ENSMAMG00000011238	urb1	99	42.976	ENSMODG00000021076	URB1	99	42.976	Monodelphis_domestica
ENSMAMG00000011238	urb1	99	71.429	ENSMALG00000017411	urb1	99	71.429	Monopterus_albus
ENSMAMG00000011238	urb1	99	41.681	MGP_CAROLIEiJ_G0020948	Urb1	99	41.681	Mus_caroli
ENSMAMG00000011238	urb1	99	41.652	ENSMUSG00000039929	Urb1	99	41.652	Mus_musculus
ENSMAMG00000011238	urb1	99	42.194	MGP_PahariEiJ_G0016653	Urb1	99	42.194	Mus_pahari
ENSMAMG00000011238	urb1	99	42.002	MGP_SPRETEiJ_G0021854	Urb1	99	42.002	Mus_spretus
ENSMAMG00000011238	urb1	99	43.203	ENSMPUG00000001123	URB1	99	43.423	Mustela_putorius_furo
ENSMAMG00000011238	urb1	99	41.947	ENSNGAG00000001905	Urb1	99	42.016	Nannospalax_galili
ENSMAMG00000011238	urb1	83	67.448	ENSNBRG00000001049	urb1	99	67.448	Neolamprologus_brichardi
ENSMAMG00000011238	urb1	98	42.438	ENSNLEG00000026872	URB1	99	41.995	Nomascus_leucogenys
ENSMAMG00000011238	urb1	93	49.806	ENSMEUG00000010828	URB1	95	40.282	Notamacropus_eugenii
ENSMAMG00000011238	urb1	99	41.189	ENSOPRG00000013482	URB1	99	41.285	Ochotona_princeps
ENSMAMG00000011238	urb1	99	43.389	ENSODEG00000002587	URB1	99	43.444	Octodon_degus
ENSMAMG00000011238	urb1	99	70.405	ENSONIG00000005599	urb1	99	70.405	Oreochromis_niloticus
ENSMAMG00000011238	urb1	99	43.402	ENSOCUG00000009381	URB1	99	43.446	Oryctolagus_cuniculus
ENSMAMG00000011238	urb1	99	64.342	ENSORLG00000003429	urb1	100	64.342	Oryzias_latipes
ENSMAMG00000011238	urb1	99	63.905	ENSORLG00020013785	urb1	100	63.905	Oryzias_latipes_hni
ENSMAMG00000011238	urb1	93	74.444	ENSORLG00015019421	urb1	99	74.444	Oryzias_latipes_hsok
ENSMAMG00000011238	urb1	78	72.727	ENSOMEG00000002094	urb1	97	72.727	Oryzias_melastigma
ENSMAMG00000011238	urb1	99	43.325	ENSOGAG00000017140	URB1	99	43.412	Otolemur_garnettii
ENSMAMG00000011238	urb1	98	41.000	ENSOARG00000013679	URB1	99	40.851	Ovis_aries
ENSMAMG00000011238	urb1	99	42.989	ENSPPAG00000003423	URB1	99	43.082	Pan_paniscus
ENSMAMG00000011238	urb1	99	42.444	ENSPPRG00000023131	URB1	99	42.626	Panthera_pardus
ENSMAMG00000011238	urb1	85	44.444	ENSPTIG00000016125	URB1	92	44.603	Panthera_tigris_altaica
ENSMAMG00000011238	urb1	99	42.989	ENSPTRG00000013852	URB1	99	42.995	Pan_troglodytes
ENSMAMG00000011238	urb1	99	43.323	ENSPANG00000021964	URB1	99	43.357	Papio_anubis
ENSMAMG00000011238	urb1	99	51.868	ENSPKIG00000003683	urb1	99	52.002	Paramormyrops_kingsleyae
ENSMAMG00000011238	urb1	98	43.104	ENSPEMG00000021205	Urb1	98	43.149	Peromyscus_maniculatus_bairdii
ENSMAMG00000011238	urb1	76	39.620	ENSPMAG00000009733	URB1	94	39.620	Petromyzon_marinus
ENSMAMG00000011238	urb1	99	42.650	ENSPCIG00000016350	URB1	99	42.947	Phascolarctos_cinereus
ENSMAMG00000011238	urb1	96	66.241	ENSPLAG00000004371	urb1	99	66.241	Poecilia_latipinna
ENSMAMG00000011238	urb1	99	66.476	ENSPMEG00000006634	urb1	99	66.476	Poecilia_mexicana
ENSMAMG00000011238	urb1	99	66.050	ENSPREG00000013453	urb1	99	66.050	Poecilia_reticulata
ENSMAMG00000011238	urb1	98	43.363	ENSPPYG00000011359	URB1	99	43.082	Pongo_abelii
ENSMAMG00000011238	urb1	99	38.552	ENSPCAG00000007430	URB1	99	38.804	Procavia_capensis
ENSMAMG00000011238	urb1	99	42.882	ENSPCOG00000022695	URB1	99	43.107	Propithecus_coquereli
ENSMAMG00000011238	urb1	99	42.776	ENSPVAG00000000889	URB1	99	42.776	Pteropus_vampyrus
ENSMAMG00000011238	urb1	99	69.810	ENSPNYG00000010589	urb1	99	69.901	Pundamilia_nyererei
ENSMAMG00000011238	urb1	99	47.891	ENSPNAG00000019324	urb1	99	47.979	Pygocentrus_nattereri
ENSMAMG00000011238	urb1	99	42.564	ENSRNOG00000002080	Urb1	99	42.608	Rattus_norvegicus
ENSMAMG00000011238	urb1	99	43.392	ENSRBIG00000033122	URB1	99	43.345	Rhinopithecus_bieti
ENSMAMG00000011238	urb1	99	43.367	ENSRROG00000040237	URB1	99	43.320	Rhinopithecus_roxellana
ENSMAMG00000011238	urb1	99	43.197	ENSSBOG00000027672	URB1	99	43.188	Saimiri_boliviensis_boliviensis
ENSMAMG00000011238	urb1	99	42.876	ENSSHAG00000005140	URB1	99	42.876	Sarcophilus_harrisii
ENSMAMG00000011238	urb1	92	54.334	ENSSFOG00015000339	urb1	99	54.451	Scleropages_formosus
ENSMAMG00000011238	urb1	99	73.483	ENSSMAG00000003782	urb1	99	73.571	Scophthalmus_maximus
ENSMAMG00000011238	urb1	99	76.709	ENSSDUG00000012313	urb1	99	76.709	Seriola_dumerili
ENSMAMG00000011238	urb1	99	76.279	ENSSLDG00000023179	urb1	99	76.279	Seriola_lalandi_dorsalis
ENSMAMG00000011238	urb1	99	43.857	ENSSPUG00000012447	URB1	99	44.056	Sphenodon_punctatus
ENSMAMG00000011238	urb1	99	72.703	ENSSPAG00000006325	urb1	100	72.703	Stegastes_partitus
ENSMAMG00000011238	urb1	99	41.832	ENSSSCG00000032024	URB1	99	41.971	Sus_scrofa
ENSMAMG00000011238	urb1	72	47.761	ENSTGUG00000013442	URB1	100	47.696	Taeniopygia_guttata
ENSMAMG00000011238	urb1	99	67.021	ENSTRUG00000009372	urb1	99	67.021	Takifugu_rubripes
ENSMAMG00000011238	urb1	99	64.973	ENSTNIG00000016277	urb1	99	64.973	Tetraodon_nigroviridis
ENSMAMG00000011238	urb1	75	50.716	ENSTBEG00000010044	URB1	74	50.716	Tupaia_belangeri
ENSMAMG00000011238	urb1	87	50.717	ENSTTRG00000007712	URB1	91	49.378	Tursiops_truncatus
ENSMAMG00000011238	urb1	99	42.308	ENSUAMG00000012231	URB1	99	42.627	Ursus_americanus
ENSMAMG00000011238	urb1	80	56.055	ENSUMAG00000017419	URB1	93	45.888	Ursus_maritimus
ENSMAMG00000011238	urb1	64	63.200	ENSVPAG00000001164	URB1	65	63.200	Vicugna_pacos
ENSMAMG00000011238	urb1	95	56.033	ENSVVUG00000000551	URB1	99	43.034	Vulpes_vulpes
ENSMAMG00000011238	urb1	98	43.982	ENSXETG00000009895	urb1	99	43.707	Xenopus_tropicalis
ENSMAMG00000011238	urb1	99	63.665	ENSXCOG00000005500	urb1	99	67.635	Xiphophorus_couchianus
ENSMAMG00000011238	urb1	99	64.273	ENSXMAG00000007253	urb1	98	67.829	Xiphophorus_maculatus