EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000011854 (Gene tree)
Gene ID: 113145755
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 6768 bases
Position: chrOOHQ01000094.1:4146472-4153239
Accession: ZDB-GENE-030131-5836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000017543	PABP	PF00658.18	1.6e-25	1	1
ENSMAMP00000017543	RRM_5	PF13893.6	5.4e-08	1	1
ENSMAMP00000017543	RRM_1	PF00076.22	2.3e-89	1	4
ENSMAMP00000017543	RRM_1	PF00076.22	2.3e-89	2	4
ENSMAMP00000017543	RRM_1	PF00076.22	2.3e-89	3	4
ENSMAMP00000017543	RRM_1	PF00076.22	2.3e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000018010	-	1848	-	ENSMAMP00000017543	615 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000011854's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000011854's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000011854	pabpc1l	97	69.935	ENSMAMG00000014610	pabpc1b	95	69.771
ENSMAMG00000011854	pabpc1l	51	34.884	ENSMAMG00000015079	celf3b	71	32.877
ENSMAMG00000011854	pabpc1l	97	68.026	ENSMAMG00000004502	-	95	75.342
ENSMAMG00000011854	pabpc1l	63	34.579	ENSMAMG00000014397	rbm19	59	33.636
ENSMAMG00000011854	pabpc1l	98	67.105	ENSMAMG00000010025	pabpc4	99	67.434
ENSMAMG00000011854	pabpc1l	58	36.364	ENSMAMG00000006701	-	98	35.897
ENSMAMG00000011854	pabpc1l	59	37.079	ENSMAMG00000002385	elavl1a	89	37.079
ENSMAMG00000011854	pabpc1l	53	30.263	ENSMAMG00000022413	rbm45	58	30.263
ENSMAMG00000011854	pabpc1l	60	30.000	ENSMAMG00000004806	ELAVL2	92	30.000
ENSMAMG00000011854	pabpc1l	60	30.464	ENSMAMG00000004000	elavl4	87	30.464
ENSMAMG00000011854	pabpc1l	51	34.884	ENSMAMG00000010052	celf1	70	34.884

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000011854	pabpc1l	97	67.980	ENSG00000101104	PABPC1L	98	75.926	Homo_sapiens
ENSMAMG00000011854	pabpc1l	100	81.833	ENSAPOG00000010842	pabpc1l	99	81.833	Acanthochromis_polyacanthus
ENSMAMG00000011854	pabpc1l	98	63.651	ENSAMEG00000004099	PABPC1L	99	63.240	Ailuropoda_melanoleuca
ENSMAMG00000011854	pabpc1l	97	91.211	ENSACIG00000021004	-	96	91.211	Amphilophus_citrinellus
ENSMAMG00000011854	pabpc1l	97	86.161	ENSAOCG00000006167	-	97	86.161	Amphiprion_ocellaris
ENSMAMG00000011854	pabpc1l	97	87.270	ENSAPEG00000010558	-	99	87.615	Amphiprion_percula
ENSMAMG00000011854	pabpc1l	97	92.333	ENSATEG00000007428	pabpc1l	97	92.833	Anabas_testudineus
ENSMAMG00000011854	pabpc1l	96	71.215	ENSAPLG00000008415	PABPC1L	96	71.240	Anas_platyrhynchos
ENSMAMG00000011854	pabpc1l	97	73.443	ENSACAG00000011841	PABPC1L	96	73.443	Anolis_carolinensis
ENSMAMG00000011854	pabpc1l	97	67.869	ENSANAG00000026826	PABPC1L	97	67.869	Aotus_nancymaae
ENSMAMG00000011854	pabpc1l	97	89.951	ENSACLG00000024791	pabpc1l	97	89.951	Astatotilapia_calliptera
ENSMAMG00000011854	pabpc1l	97	79.967	ENSAMXG00000013552	pabpc1l	97	79.967	Astyanax_mexicanus
ENSMAMG00000011854	pabpc1l	63	84.524	ENSBTAG00000055300	-	100	84.524	Bos_taurus
ENSMAMG00000011854	pabpc1l	61	68.163	ENSBTAG00000016849	PABPC1L	74	68.163	Bos_taurus
ENSMAMG00000011854	pabpc1l	97	68.033	ENSCJAG00000017628	PABPC1L	97	68.033	Callithrix_jacchus
ENSMAMG00000011854	pabpc1l	60	77.586	ENSCJAG00000038506	-	100	77.586	Callithrix_jacchus
ENSMAMG00000011854	pabpc1l	97	62.421	ENSCAFG00000009573	PABPC1L	98	62.421	Canis_familiaris
ENSMAMG00000011854	pabpc1l	98	66.884	ENSCAFG00020013828	PABPC1L	98	66.884	Canis_lupus_dingo
ENSMAMG00000011854	pabpc1l	98	67.427	ENSCHIG00000025759	PABPC1L	91	67.427	Capra_hircus
ENSMAMG00000011854	pabpc1l	97	66.939	ENSTSYG00000006645	PABPC1L	97	66.939	Carlito_syrichta
ENSMAMG00000011854	pabpc1l	97	61.296	ENSCAPG00000014519	PABPC1L	96	61.296	Cavia_aperea
ENSMAMG00000011854	pabpc1l	97	64.052	ENSCPOG00000013633	PABPC1L	97	64.052	Cavia_porcellus
ENSMAMG00000011854	pabpc1l	97	67.213	ENSCCAG00000023338	PABPC1L	97	67.869	Cebus_capucinus
ENSMAMG00000011854	pabpc1l	97	68.144	ENSCATG00000034065	PABPC1L	97	68.361	Cercocebus_atys
ENSMAMG00000011854	pabpc1l	97	63.711	ENSCLAG00000005298	PABPC1L	97	64.368	Chinchilla_lanigera
ENSMAMG00000011854	pabpc1l	97	67.980	ENSCSAG00000014242	PABPC1L	97	68.197	Chlorocebus_sabaeus
ENSMAMG00000011854	pabpc1l	71	78.231	ENSCPBG00000017755	-	99	78.231	Chrysemys_picta_bellii
ENSMAMG00000011854	pabpc1l	56	82.443	ENSCPBG00000007810	-	91	82.443	Chrysemys_picta_bellii
ENSMAMG00000011854	pabpc1l	98	49.307	ENSCING00000002796	-	97	50.800	Ciona_intestinalis
ENSMAMG00000011854	pabpc1l	100	64.989	ENSCSAVG00000004246	-	89	70.199	Ciona_savignyi
ENSMAMG00000011854	pabpc1l	97	56.250	ENSCSAVG00000003102	-	100	83.221	Ciona_savignyi
ENSMAMG00000011854	pabpc1l	97	65.049	ENSCANG00000037530	PABPC1L	97	65.105	Colobus_angolensis_palliatus
ENSMAMG00000011854	pabpc1l	93	60.877	ENSCGRG00001021938	Pabpc1l	97	61.264	Cricetulus_griseus_chok1gshd
ENSMAMG00000011854	pabpc1l	93	60.877	ENSCGRG00000007946	Pabpc1l	97	61.264	Cricetulus_griseus_crigri
ENSMAMG00000011854	pabpc1l	97	77.722	ENSCSEG00000021295	pabpc1l	97	77.722	Cynoglossus_semilaevis
ENSMAMG00000011854	pabpc1l	97	88.020	ENSCVAG00000015943	-	99	93.893	Cyprinodon_variegatus
ENSMAMG00000011854	pabpc1l	97	79.770	ENSDARG00000002597	pabpc1l	88	93.846	Danio_rerio
ENSMAMG00000011854	pabpc1l	97	67.715	ENSDNOG00000048450	PABPC1L	97	67.715	Dasypus_novemcinctus
ENSMAMG00000011854	pabpc1l	97	65.189	ENSDORG00000001067	Pabpc1l	97	65.189	Dipodomys_ordii
ENSMAMG00000011854	pabpc1l	93	75.203	ENSETEG00000009969	PABPC1L	69	75.203	Echinops_telfairi
ENSMAMG00000011854	pabpc1l	63	82.143	ENSEASG00005023408	-	100	82.143	Equus_asinus_asinus
ENSMAMG00000011854	pabpc1l	57	64.467	ENSEASG00005023407	-	78	64.467	Equus_asinus_asinus
ENSMAMG00000011854	pabpc1l	67	64.378	ENSECAG00000040139	-	84	64.378	Equus_caballus
ENSMAMG00000011854	pabpc1l	98	65.132	ENSEEUG00000005978	PABPC1L	98	65.132	Erinaceus_europaeus
ENSMAMG00000011854	pabpc1l	97	80.851	ENSELUG00000001811	pabpc1l	97	80.851	Esox_lucius
ENSMAMG00000011854	pabpc1l	98	68.026	ENSFCAG00000011692	PABPC1L	98	68.026	Felis_catus
ENSMAMG00000011854	pabpc1l	85	71.456	ENSFALG00000005372	PABPC1L	92	69.891	Ficedula_albicollis
ENSMAMG00000011854	pabpc1l	97	63.621	ENSFDAG00000008291	PABPC1L	97	63.953	Fukomys_damarensis
ENSMAMG00000011854	pabpc1l	97	89.037	ENSFHEG00000003398	pabpc1l	97	89.037	Fundulus_heteroclitus
ENSMAMG00000011854	pabpc1l	97	82.862	ENSGMOG00000004437	pabpc1l	96	82.862	Gadus_morhua
ENSMAMG00000011854	pabpc1l	93	76.429	ENSGALG00000004123	PABPC1L	99	78.860	Gallus_gallus
ENSMAMG00000011854	pabpc1l	97	83.281	ENSGAFG00000021057	pabpc1l	97	83.281	Gambusia_affinis
ENSMAMG00000011854	pabpc1l	97	86.678	ENSGACG00000002792	pabpc1l	97	86.678	Gasterosteus_aculeatus
ENSMAMG00000011854	pabpc1l	97	72.906	ENSGAGG00000000589	PABPC1L	91	80.000	Gopherus_agassizii
ENSMAMG00000011854	pabpc1l	97	67.980	ENSGGOG00000004584	PABPC1L	97	68.033	Gorilla_gorilla
ENSMAMG00000011854	pabpc1l	97	89.786	ENSHBUG00000006134	pabpc1l	97	89.786	Haplochromis_burtoni
ENSMAMG00000011854	pabpc1l	97	64.851	ENSHGLG00000008434	PABPC1L	97	64.851	Heterocephalus_glaber_female
ENSMAMG00000011854	pabpc1l	97	64.851	ENSHGLG00100012151	PABPC1L	97	64.851	Heterocephalus_glaber_male
ENSMAMG00000011854	pabpc1l	59	83.708	ENSHGLG00100019506	-	100	83.708	Heterocephalus_glaber_male
ENSMAMG00000011854	pabpc1l	97	86.919	ENSHCOG00000009270	pabpc1l	97	86.919	Hippocampus_comes
ENSMAMG00000011854	pabpc1l	60	62.011	ENSIPUG00000006780	-	87	62.011	Ictalurus_punctatus
ENSMAMG00000011854	pabpc1l	59	63.218	ENSIPUG00000006760	-	88	63.218	Ictalurus_punctatus
ENSMAMG00000011854	pabpc1l	97	78.525	ENSIPUG00000012602	pabpc1l	97	78.525	Ictalurus_punctatus
ENSMAMG00000011854	pabpc1l	97	66.998	ENSSTOG00000003739	PABPC1L	97	66.998	Ictidomys_tridecemlineatus
ENSMAMG00000011854	pabpc1l	93	52.216	ENSJJAG00000022406	Pabpc1l	96	51.067	Jaculus_jaculus
ENSMAMG00000011854	pabpc1l	97	89.112	ENSKMAG00000016847	pabpc1l	97	89.112	Kryptolebias_marmoratus
ENSMAMG00000011854	pabpc1l	100	87.680	ENSLBEG00000010084	pabpc1l	99	87.680	Labrus_bergylta
ENSMAMG00000011854	pabpc1l	97	72.771	ENSLACG00000005762	PABPC1L	99	73.937	Latimeria_chalumnae
ENSMAMG00000011854	pabpc1l	97	80.820	ENSLOCG00000007519	pabpc1l	96	80.820	Lepisosteus_oculatus
ENSMAMG00000011854	pabpc1l	97	65.700	ENSLAFG00000003553	PABPC1L	98	65.700	Loxodonta_africana
ENSMAMG00000011854	pabpc1l	97	68.309	ENSMFAG00000040365	PABPC1L	97	68.525	Macaca_fascicularis
ENSMAMG00000011854	pabpc1l	97	67.323	ENSMNEG00000032298	PABPC1L	97	67.541	Macaca_nemestrina
ENSMAMG00000011854	pabpc1l	97	68.144	ENSMLEG00000043139	PABPC1L	97	68.361	Mandrillus_leucophaeus
ENSMAMG00000011854	pabpc1l	97	89.951	ENSMZEG00005023713	pabpc1l	97	89.951	Maylandia_zebra
ENSMAMG00000011854	pabpc1l	94	72.572	ENSMGAG00000003674	PABPC1L	96	72.397	Meleagris_gallopavo
ENSMAMG00000011854	pabpc1l	98	60.423	ENSMOCG00000013186	Pabpc1l	98	60.423	Microtus_ochrogaster
ENSMAMG00000011854	pabpc1l	100	88.961	ENSMMOG00000020574	-	99	88.961	Mola_mola
ENSMAMG00000011854	pabpc1l	94	69.898	ENSMODG00000016198	PABPC1L	99	70.083	Monodelphis_domestica
ENSMAMG00000011854	pabpc1l	97	92.219	ENSMALG00000021622	pabpc1l	100	92.219	Monopterus_albus
ENSMAMG00000011854	pabpc1l	93	60.371	MGP_CAROLIEiJ_G0024627	Pabpc1l	97	60.778	Mus_caroli
ENSMAMG00000011854	pabpc1l	93	60.371	ENSMUSG00000054582	Pabpc1l	97	60.778	Mus_musculus
ENSMAMG00000011854	pabpc1l	93	60.788	MGP_PahariEiJ_G0026071	Pabpc1l	97	61.184	Mus_pahari
ENSMAMG00000011854	pabpc1l	93	60.371	MGP_SPRETEiJ_G0025549	Pabpc1l	97	60.778	Mus_spretus
ENSMAMG00000011854	pabpc1l	98	68.301	ENSMPUG00000017646	PABPC1L	98	68.301	Mustela_putorius_furo
ENSMAMG00000011854	pabpc1l	99	65.490	ENSMLUG00000006324	PABPC1L	98	65.490	Myotis_lucifugus
ENSMAMG00000011854	pabpc1l	93	62.331	ENSNGAG00000010458	Pabpc1l	97	62.338	Nannospalax_galili
ENSMAMG00000011854	pabpc1l	97	93.494	ENSNBRG00000016633	pabpc1l	96	93.494	Neolamprologus_brichardi
ENSMAMG00000011854	pabpc1l	90	64.801	ENSMEUG00000007905	-	89	64.801	Notamacropus_eugenii
ENSMAMG00000011854	pabpc1l	97	66.557	ENSOPRG00000011846	PABPC1L	97	66.557	Ochotona_princeps
ENSMAMG00000011854	pabpc1l	93	62.134	ENSODEG00000015482	PABPC1L	96	62.134	Octodon_degus
ENSMAMG00000011854	pabpc1l	58	77.500	ENSODEG00000002920	-	97	77.500	Octodon_degus
ENSMAMG00000011854	pabpc1l	97	89.951	ENSONIG00000017314	pabpc1l	97	89.951	Oreochromis_niloticus
ENSMAMG00000011854	pabpc1l	90	60.568	ENSOANG00000015793	-	100	60.568	Ornithorhynchus_anatinus
ENSMAMG00000011854	pabpc1l	97	63.880	ENSOCUG00000003005	PABPC1L	98	63.880	Oryctolagus_cuniculus
ENSMAMG00000011854	pabpc1l	97	88.551	ENSORLG00000010322	pabpc1l	96	88.551	Oryzias_latipes
ENSMAMG00000011854	pabpc1l	97	88.551	ENSORLG00020021193	pabpc1l	96	88.551	Oryzias_latipes_hni
ENSMAMG00000011854	pabpc1l	97	88.551	ENSORLG00015017018	pabpc1l	96	88.551	Oryzias_latipes_hsok
ENSMAMG00000011854	pabpc1l	97	81.918	ENSOMEG00000010789	pabpc1l	97	81.918	Oryzias_melastigma
ENSMAMG00000011854	pabpc1l	97	66.885	ENSOGAG00000032999	PABPC1L	97	66.885	Otolemur_garnettii
ENSMAMG00000011854	pabpc1l	98	66.937	ENSOARG00000004578	PABPC1L	98	66.937	Ovis_aries
ENSMAMG00000011854	pabpc1l	97	68.144	ENSPPAG00000039677	PABPC1L	97	68.197	Pan_paniscus
ENSMAMG00000011854	pabpc1l	62	66.049	ENSPPRG00000019327	-	98	66.049	Panthera_pardus
ENSMAMG00000011854	pabpc1l	98	68.040	ENSPTIG00000006524	PABPC1L	98	68.040	Panthera_tigris_altaica
ENSMAMG00000011854	pabpc1l	63	76.235	ENSPTRG00000013531	PABPC1L	98	76.235	Pan_troglodytes
ENSMAMG00000011854	pabpc1l	97	68.144	ENSPANG00000018788	PABPC1L	97	68.361	Papio_anubis
ENSMAMG00000011854	pabpc1l	53	81.679	ENSPKIG00000016810	-	93	81.679	Paramormyrops_kingsleyae
ENSMAMG00000011854	pabpc1l	97	79.669	ENSPKIG00000007322	pabpc1l	97	79.669	Paramormyrops_kingsleyae
ENSMAMG00000011854	pabpc1l	67	80.576	ENSPSIG00000013289	PABPC1L	99	80.576	Pelodiscus_sinensis
ENSMAMG00000011854	pabpc1l	57	86.667	ENSPMGG00000023121	-	91	86.667	Periophthalmus_magnuspinnatus
ENSMAMG00000011854	pabpc1l	63	94.697	ENSPMGG00000023117	pabpc1l	99	94.697	Periophthalmus_magnuspinnatus
ENSMAMG00000011854	pabpc1l	97	60.820	ENSPEMG00000020671	Pabpc1l	97	60.912	Peromyscus_maniculatus_bairdii
ENSMAMG00000011854	pabpc1l	97	89.130	ENSPFOG00000013241	pabpc1l	96	89.130	Poecilia_formosa
ENSMAMG00000011854	pabpc1l	97	87.664	ENSPLAG00000017490	-	97	87.664	Poecilia_latipinna
ENSMAMG00000011854	pabpc1l	53	95.385	ENSPLAG00000023686	-	92	95.385	Poecilia_latipinna
ENSMAMG00000011854	pabpc1l	53	95.385	ENSPMEG00000009185	-	88	95.385	Poecilia_mexicana
ENSMAMG00000011854	pabpc1l	97	88.119	ENSPMEG00000007677	pabpc1l	97	88.119	Poecilia_mexicana
ENSMAMG00000011854	pabpc1l	67	93.917	ENSPREG00000015886	pabpc1l	99	93.917	Poecilia_reticulata
ENSMAMG00000011854	pabpc1l	97	68.144	ENSPPYG00000011042	PABPC1L	97	68.197	Pongo_abelii
ENSMAMG00000011854	pabpc1l	61	82.812	ENSPCAG00000011787	-	75	82.812	Procavia_capensis
ENSMAMG00000011854	pabpc1l	97	67.377	ENSPCOG00000020630	PABPC1L	97	67.377	Propithecus_coquereli
ENSMAMG00000011854	pabpc1l	98	65.742	ENSPVAG00000012663	PABPC1L	98	65.742	Pteropus_vampyrus
ENSMAMG00000011854	pabpc1l	97	93.735	ENSPNYG00000004101	pabpc1l	96	93.735	Pundamilia_nyererei
ENSMAMG00000011854	pabpc1l	97	73.071	ENSPNAG00000021248	pabpc1l	97	73.071	Pygocentrus_nattereri
ENSMAMG00000011854	pabpc1l	93	60.997	ENSRNOG00000012750	Pabpc1l	97	61.475	Rattus_norvegicus
ENSMAMG00000011854	pabpc1l	97	68.309	ENSRBIG00000035381	PABPC1L	97	68.361	Rhinopithecus_bieti
ENSMAMG00000011854	pabpc1l	97	68.144	ENSRROG00000044498	PABPC1L	97	68.197	Rhinopithecus_roxellana
ENSMAMG00000011854	pabpc1l	97	67.705	ENSSBOG00000009532	-	97	67.705	Saimiri_boliviensis_boliviensis
ENSMAMG00000011854	pabpc1l	97	64.979	ENSSHAG00000011446	PABPC1L	97	64.979	Sarcophilus_harrisii
ENSMAMG00000011854	pabpc1l	97	79.043	ENSSFOG00015017304	pabpc1l	97	78.913	Scleropages_formosus
ENSMAMG00000011854	pabpc1l	100	87.762	ENSSMAG00000010516	pabpc1l	98	96.899	Scophthalmus_maximus
ENSMAMG00000011854	pabpc1l	97	91.104	ENSSDUG00000014743	pabpc1l	97	91.104	Seriola_dumerili
ENSMAMG00000011854	pabpc1l	97	95.422	ENSSLDG00000006981	pabpc1l	100	91.275	Seriola_lalandi_dorsalis
ENSMAMG00000011854	pabpc1l	97	71.967	ENSSPUG00000004233	PABPC1L	96	71.967	Sphenodon_punctatus
ENSMAMG00000011854	pabpc1l	97	78.727	ENSSPAG00000017137	pabpc1l	97	78.727	Stegastes_partitus
ENSMAMG00000011854	pabpc1l	98	66.830	ENSSSCG00000007382	PABPC1L	98	66.830	Sus_scrofa
ENSMAMG00000011854	pabpc1l	97	70.759	ENSTGUG00000005114	PABPC1L	97	70.759	Taeniopygia_guttata
ENSMAMG00000011854	pabpc1l	97	87.789	ENSTRUG00000011085	pabpc1l	97	87.789	Takifugu_rubripes
ENSMAMG00000011854	pabpc1l	97	85.667	ENSTNIG00000017903	pabpc1l	96	85.667	Tetraodon_nigroviridis
ENSMAMG00000011854	pabpc1l	92	75.342	ENSTBEG00000002851	PABPC1L	77	75.342	Tupaia_belangeri
ENSMAMG00000011854	pabpc1l	94	65.641	ENSTTRG00000007618	PABPC1L	100	66.057	Tursiops_truncatus
ENSMAMG00000011854	pabpc1l	98	65.512	ENSUAMG00000017682	PABPC1L	98	65.512	Ursus_americanus
ENSMAMG00000011854	pabpc1l	67	72.702	ENSUMAG00000025436	PABPC1L	92	72.702	Ursus_maritimus
ENSMAMG00000011854	pabpc1l	98	73.518	ENSVVUG00000018939	PABPC1L	97	73.518	Vulpes_vulpes
ENSMAMG00000011854	pabpc1l	97	70.608	ENSXETG00000022831	pabpc1l	96	70.608	Xenopus_tropicalis
ENSMAMG00000011854	pabpc1l	97	91.866	ENSXCOG00000005459	pabpc1l	99	90.780	Xiphophorus_couchianus
ENSMAMG00000011854	pabpc1l	97	87.500	ENSXMAG00000017135	pabpc1l	97	87.500	Xiphophorus_maculatus