EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000012059 (Gene tree)
Gene ID: 113141561
Gene Symbol: raver1
Alias: zgc:112236
Full Name: ribonucleoprotein%2C PTB binding 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 7241 bases
Position: chrOOHQ01000092.1:12954312-12961552
Accession: 113141561
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000017977	RRM_1	PF00076.22	1.7e-28	1	2
ENSMAMP00000017977	RRM_1	PF00076.22	1.7e-28	2	2
ENSMAMP00000017955	RRM_1	PF00076.22	1.9e-28	1	2
ENSMAMP00000017955	RRM_1	PF00076.22	1.9e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000018429	-	2202	-	ENSMAMP00000017955	733 (aa)	XP_026181836	UPI000E461AF1
ENSMAMT00000018451	-	2145	-	ENSMAMP00000017977	714 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000012059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000012059's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000012059	raver1	50	55.249	ENSMAMG00000009059	raver2	72	57.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000012059	raver1	93	51.012	ENSG00000161847	RAVER1	98	50.607	Homo_sapiens
ENSMAMG00000012059	raver1	98	84.937	ENSAPOG00000017267	raver1	90	84.937	Acanthochromis_polyacanthus
ENSMAMG00000012059	raver1	93	49.461	ENSAMEG00000011738	RAVER1	73	77.358	Ailuropoda_melanoleuca
ENSMAMG00000012059	raver1	98	86.453	ENSAOCG00000005128	raver1	95	86.453	Amphiprion_ocellaris
ENSMAMG00000012059	raver1	98	86.408	ENSAPEG00000010854	raver1	98	87.324	Amphiprion_percula
ENSMAMG00000012059	raver1	98	86.981	ENSATEG00000021004	raver1	100	86.903	Anabas_testudineus
ENSMAMG00000012059	raver1	78	50.820	ENSACAG00000008386	-	84	52.226	Anolis_carolinensis
ENSMAMG00000012059	raver1	78	77.358	ENSANAG00000028226	RAVER1	73	77.358	Aotus_nancymaae
ENSMAMG00000012059	raver1	100	82.970	ENSACLG00000018492	raver1	94	83.126	Astatotilapia_calliptera
ENSMAMG00000012059	raver1	98	68.219	ENSAMXG00000005132	raver1	98	67.534	Astyanax_mexicanus
ENSMAMG00000012059	raver1	74	84.000	ENSBTAG00000015721	RAVER1	85	77.358	Bos_taurus
ENSMAMG00000012059	raver1	78	77.358	ENSCJAG00000005671	RAVER1	73	77.358	Callithrix_jacchus
ENSMAMG00000012059	raver1	93	50.836	ENSCAFG00000017861	RAVER1	95	51.536	Canis_familiaris
ENSMAMG00000012059	raver1	93	50.836	ENSCAFG00020024449	RAVER1	97	51.536	Canis_lupus_dingo
ENSMAMG00000012059	raver1	60	81.633	ENSCHIG00000006718	RAVER1	75	81.633	Capra_hircus
ENSMAMG00000012059	raver1	53	83.333	ENSTSYG00000027107	RAVER1	57	83.333	Carlito_syrichta
ENSMAMG00000012059	raver1	71	77.358	ENSCAPG00000002269	RAVER1	75	77.358	Cavia_aperea
ENSMAMG00000012059	raver1	76	77.358	ENSCPOG00000001008	RAVER1	75	77.358	Cavia_porcellus
ENSMAMG00000012059	raver1	78	83.333	ENSCCAG00000031723	RAVER1	73	83.333	Cebus_capucinus
ENSMAMG00000012059	raver1	77	83.333	ENSCATG00000043863	RAVER1	72	83.333	Cercocebus_atys
ENSMAMG00000012059	raver1	78	79.245	ENSCLAG00000009336	RAVER1	75	79.245	Chinchilla_lanigera
ENSMAMG00000012059	raver1	78	77.358	ENSCSAG00000007317	RAVER1	63	77.358	Chlorocebus_sabaeus
ENSMAMG00000012059	raver1	91	52.139	ENSCPBG00000005349	-	96	50.794	Chrysemys_picta_bellii
ENSMAMG00000012059	raver1	77	83.333	ENSCANG00000008337	RAVER1	72	83.333	Colobus_angolensis_palliatus
ENSMAMG00000012059	raver1	76	79.245	ENSCGRG00001013260	-	74	79.245	Cricetulus_griseus_chok1gshd
ENSMAMG00000012059	raver1	76	79.245	ENSCGRG00000015138	-	74	79.245	Cricetulus_griseus_crigri
ENSMAMG00000012059	raver1	98	75.824	ENSCSEG00000021092	raver1	98	75.824	Cynoglossus_semilaevis
ENSMAMG00000012059	raver1	100	78.912	ENSCVAG00000013971	raver1	98	79.363	Cyprinodon_variegatus
ENSMAMG00000012059	raver1	98	69.848	ENSDARG00000052617	raver1	98	68.603	Danio_rerio
ENSMAMG00000012059	raver1	52	86.000	ENSDNOG00000035742	-	51	79.245	Dasypus_novemcinctus
ENSMAMG00000012059	raver1	93	46.649	ENSDORG00000010106	-	79	59.524	Dipodomys_ordii
ENSMAMG00000012059	raver1	53	67.454	ENSEASG00005010544	-	72	66.244	Equus_asinus_asinus
ENSMAMG00000012059	raver1	65	77.358	ENSECAG00000024966	RAVER1	73	77.358	Equus_caballus
ENSMAMG00000012059	raver1	98	74.586	ENSELUG00000023287	raver1	100	73.913	Esox_lucius
ENSMAMG00000012059	raver1	93	49.461	ENSFCAG00000009435	RAVER1	73	77.358	Felis_catus
ENSMAMG00000012059	raver1	72	84.000	ENSFDAG00000015113	RAVER1	75	77.358	Fukomys_damarensis
ENSMAMG00000012059	raver1	93	69.371	ENSGMOG00000003649	raver1	99	69.930	Gadus_morhua
ENSMAMG00000012059	raver1	68	39.024	ENSGALG00000050608	-	52	39.638	Gallus_gallus
ENSMAMG00000012059	raver1	100	80.027	ENSGAFG00000015944	raver1	98	80.498	Gambusia_affinis
ENSMAMG00000012059	raver1	95	70.845	ENSGACG00000013818	raver1	100	73.161	Gasterosteus_aculeatus
ENSMAMG00000012059	raver1	80	68.817	ENSGAGG00000011748	-	97	67.792	Gopherus_agassizii
ENSMAMG00000012059	raver1	93	50.877	ENSGGOG00000006015	RAVER1	96	50.607	Gorilla_gorilla
ENSMAMG00000012059	raver1	99	82.990	ENSHBUG00000021210	raver1	98	78.838	Haplochromis_burtoni
ENSMAMG00000012059	raver1	77	71.667	ENSHGLG00000015460	RAVER1	75	77.358	Heterocephalus_glaber_female
ENSMAMG00000012059	raver1	77	71.667	ENSHGLG00100000812	RAVER1	75	77.358	Heterocephalus_glaber_male
ENSMAMG00000012059	raver1	100	76.495	ENSHCOG00000000449	raver1	96	76.796	Hippocampus_comes
ENSMAMG00000012059	raver1	98	70.083	ENSIPUG00000013153	raver1	98	70.776	Ictalurus_punctatus
ENSMAMG00000012059	raver1	82	58.513	ENSSTOG00000003241	RAVER1	75	77.358	Ictidomys_tridecemlineatus
ENSMAMG00000012059	raver1	93	50.536	ENSJJAG00000018219	-	74	79.245	Jaculus_jaculus
ENSMAMG00000012059	raver1	100	81.880	ENSKMAG00000017355	raver1	98	82.019	Kryptolebias_marmoratus
ENSMAMG00000012059	raver1	92	85.988	ENSLBEG00000008268	raver1	94	85.736	Labrus_bergylta
ENSMAMG00000012059	raver1	85	49.432	ENSLACG00000005809	-	76	81.132	Latimeria_chalumnae
ENSMAMG00000012059	raver1	96	61.682	ENSLOCG00000007500	raver1	96	62.216	Lepisosteus_oculatus
ENSMAMG00000012059	raver1	81	77.358	ENSLAFG00000003664	-	92	77.193	Loxodonta_africana
ENSMAMG00000012059	raver1	77	83.333	ENSMFAG00000037977	RAVER1	72	83.333	Macaca_fascicularis
ENSMAMG00000012059	raver1	78	77.358	ENSMMUG00000014897	RAVER1	73	77.358	Macaca_mulatta
ENSMAMG00000012059	raver1	77	83.333	ENSMNEG00000028390	RAVER1	72	83.333	Macaca_nemestrina
ENSMAMG00000012059	raver1	77	83.333	ENSMLEG00000041959	RAVER1	72	83.333	Mandrillus_leucophaeus
ENSMAMG00000012059	raver1	100	82.970	ENSMZEG00005019002	raver1	98	83.126	Maylandia_zebra
ENSMAMG00000012059	raver1	80	57.407	ENSMAUG00000017948	-	74	79.245	Mesocricetus_auratus
ENSMAMG00000012059	raver1	93	51.961	ENSMICG00000010326	RAVER1	77	76.923	Microcebus_murinus
ENSMAMG00000012059	raver1	76	79.245	ENSMOCG00000015553	-	74	79.245	Microtus_ochrogaster
ENSMAMG00000012059	raver1	98	84.211	ENSMMOG00000012093	raver1	100	83.902	Mola_mola
ENSMAMG00000012059	raver1	90	50.583	ENSMODG00000005584	-	87	50.441	Monodelphis_domestica
ENSMAMG00000012059	raver1	100	84.060	ENSMALG00000016569	raver1	99	85.754	Monopterus_albus
ENSMAMG00000012059	raver1	58	79.245	MGP_CAROLIEiJ_G0031860	-	75	79.245	Mus_caroli
ENSMAMG00000012059	raver1	57	79.245	ENSMUSG00000010205	Raver1	75	79.245	Mus_musculus
ENSMAMG00000012059	raver1	56	79.245	MGP_PahariEiJ_G0014726	-	75	79.245	Mus_pahari
ENSMAMG00000012059	raver1	57	79.245	MGP_SPRETEiJ_G0032984	-	75	79.245	Mus_spretus
ENSMAMG00000012059	raver1	76	77.358	ENSMPUG00000006712	RAVER1	74	77.358	Mustela_putorius_furo
ENSMAMG00000012059	raver1	78	77.358	ENSMLUG00000012328	RAVER1	78	77.358	Myotis_lucifugus
ENSMAMG00000012059	raver1	77	77.358	ENSNGAG00000001260	-	74	77.358	Nannospalax_galili
ENSMAMG00000012059	raver1	100	74.659	ENSNBRG00000010139	raver1	98	75.657	Neolamprologus_brichardi
ENSMAMG00000012059	raver1	78	77.358	ENSNLEG00000012181	RAVER1	73	77.358	Nomascus_leucogenys
ENSMAMG00000012059	raver1	71	80.000	ENSMEUG00000003281	-	77	80.000	Notamacropus_eugenii
ENSMAMG00000012059	raver1	78	77.358	ENSODEG00000016260	RAVER1	77	77.193	Octodon_degus
ENSMAMG00000012059	raver1	92	81.406	ENSONIG00000001559	raver1	100	81.406	Oreochromis_niloticus
ENSMAMG00000012059	raver1	93	50.070	ENSOCUG00000020918	RAVER1	76	77.358	Oryctolagus_cuniculus
ENSMAMG00000012059	raver1	100	78.581	ENSORLG00000005458	raver1	98	78.670	Oryzias_latipes
ENSMAMG00000012059	raver1	100	78.854	ENSORLG00020004392	raver1	98	78.947	Oryzias_latipes_hni
ENSMAMG00000012059	raver1	100	79.263	ENSORLG00015017222	raver1	98	79.363	Oryzias_latipes_hsok
ENSMAMG00000012059	raver1	94	90.566	ENSOMEG00000023956	raver1	98	90.566	Oryzias_melastigma
ENSMAMG00000012059	raver1	93	50.335	ENSOGAG00000011071	RAVER1	74	77.358	Otolemur_garnettii
ENSMAMG00000012059	raver1	74	84.000	ENSOARG00000015886	RAVER1	74	77.358	Ovis_aries
ENSMAMG00000012059	raver1	93	51.012	ENSPPAG00000002611	RAVER1	96	50.607	Pan_paniscus
ENSMAMG00000012059	raver1	93	49.461	ENSPPRG00000009912	RAVER1	73	77.358	Panthera_pardus
ENSMAMG00000012059	raver1	93	51.012	ENSPTRG00000010466	RAVER1	96	50.607	Pan_troglodytes
ENSMAMG00000012059	raver1	77	83.333	ENSPANG00000004122	RAVER1	72	83.333	Papio_anubis
ENSMAMG00000012059	raver1	76	77.358	ENSPEMG00000016411	-	74	77.358	Peromyscus_maniculatus_bairdii
ENSMAMG00000012059	raver1	79	80.000	ENSPCIG00000018695	-	82	80.000	Phascolarctos_cinereus
ENSMAMG00000012059	raver1	100	76.203	ENSPFOG00000007016	raver1	98	78.231	Poecilia_formosa
ENSMAMG00000012059	raver1	95	77.396	ENSPLAG00000020793	raver1	97	77.843	Poecilia_latipinna
ENSMAMG00000012059	raver1	100	79.348	ENSPMEG00000011220	raver1	98	79.806	Poecilia_mexicana
ENSMAMG00000012059	raver1	100	76.290	ENSPREG00000006864	raver1	98	76.705	Poecilia_reticulata
ENSMAMG00000012059	raver1	78	77.358	ENSPPYG00000010514	RAVER1	63	77.358	Pongo_abelii
ENSMAMG00000012059	raver1	78	77.358	ENSPCOG00000026605	RAVER1	73	77.358	Propithecus_coquereli
ENSMAMG00000012059	raver1	76	77.358	ENSPVAG00000003689	RAVER1	76	77.358	Pteropus_vampyrus
ENSMAMG00000012059	raver1	100	76.975	ENSPNYG00000013284	raver1	98	78.147	Pundamilia_nyererei
ENSMAMG00000012059	raver1	98	70.315	ENSPNAG00000015476	raver1	98	69.672	Pygocentrus_nattereri
ENSMAMG00000012059	raver1	91	49.187	ENSRNOG00000020710	Raver1	97	50.265	Rattus_norvegicus
ENSMAMG00000012059	raver1	78	77.358	ENSRBIG00000034702	RAVER1	72	83.333	Rhinopithecus_bieti
ENSMAMG00000012059	raver1	79	71.186	ENSRROG00000031186	RAVER1	72	83.333	Rhinopithecus_roxellana
ENSMAMG00000012059	raver1	93	52.072	ENSSBOG00000023423	RAVER1	96	52.095	Saimiri_boliviensis_boliviensis
ENSMAMG00000012059	raver1	85	52.454	ENSSHAG00000008181	-	72	80.000	Sarcophilus_harrisii
ENSMAMG00000012059	raver1	98	86.050	ENSSMAG00000004546	raver1	100	86.122	Scophthalmus_maximus
ENSMAMG00000012059	raver1	98	90.582	ENSSDUG00000021063	raver1	100	90.587	Seriola_dumerili
ENSMAMG00000012059	raver1	98	90.443	ENSSLDG00000014505	raver1	100	90.450	Seriola_lalandi_dorsalis
ENSMAMG00000012059	raver1	98	86.565	ENSSPAG00000000688	raver1	100	86.630	Stegastes_partitus
ENSMAMG00000012059	raver1	75	77.193	ENSSSCG00000013650	-	98	51.590	Sus_scrofa
ENSMAMG00000012059	raver1	98	78.759	ENSTRUG00000025641	raver1	98	78.345	Takifugu_rubripes
ENSMAMG00000012059	raver1	78	77.358	ENSTTRG00000009552	RAVER1	75	77.358	Tursiops_truncatus
ENSMAMG00000012059	raver1	93	50.404	ENSUAMG00000020385	RAVER1	73	77.358	Ursus_americanus
ENSMAMG00000012059	raver1	93	50.836	ENSVVUG00000028976	RAVER1	95	51.536	Vulpes_vulpes
ENSMAMG00000012059	raver1	95	48.343	ENSXETG00000011622	raver1	99	49.914	Xenopus_tropicalis
ENSMAMG00000012059	raver1	100	80.707	ENSXCOG00000016368	raver1	98	81.189	Xiphophorus_couchianus
ENSMAMG00000012059	raver1	100	80.707	ENSXMAG00000000217	raver1	98	81.189	Xiphophorus_maculatus