EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000012236 (Gene tree)
Gene ID: 113123408
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 10214 bases
Position: chrOOHQ01000107.1:9636790-9647003
Accession: 113123408
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000018200	RRM_1	PF00076.22	4.7e-13	1	1
ENSMAMP00000018178	RRM_1	PF00076.22	4.8e-13	1	1
ENSMAMP00000018147	RRM_1	PF00076.22	5.2e-13	1	1
ENSMAMP00000018160	RRM_1	PF00076.22	5.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000018621	-	2192	-	ENSMAMP00000018147	308 (aa)	XP_026151228	UPI000E4624DE
ENSMAMT00000018652	-	2031	-	ENSMAMP00000018178	292 (aa)	-	-
ENSMAMT00000018634	-	2079	-	ENSMAMP00000018160	308 (aa)	XP_026151228	UPI000E4624DE
ENSMAMT00000018675	-	864	-	ENSMAMP00000018200	287 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000012236's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000012236's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000012236	-	94	77.739	ENSMAMG00000008033	-	88	82.745
ENSMAMG00000012236	-	71	48.309	ENSMAMG00000012529	raly	57	55.208
ENSMAMG00000012236	-	74	57.589	ENSMAMG00000001723	-	74	60.633

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000012236	-	74	58.716	ENSG00000184672	RALYL	93	78.481	Homo_sapiens
ENSMAMG00000012236	-	100	92.532	ENSAPOG00000006963	hnrnpc	100	91.558	Acanthochromis_polyacanthus
ENSMAMG00000012236	-	99	73.448	ENSACIG00000016568	-	92	81.557	Amphilophus_citrinellus
ENSMAMG00000012236	-	96	93.624	ENSACIG00000000270	-	99	93.537	Amphilophus_citrinellus
ENSMAMG00000012236	-	100	92.208	ENSAOCG00000003896	-	100	91.234	Amphiprion_ocellaris
ENSMAMG00000012236	-	84	80.237	ENSAOCG00000021616	-	78	84.585	Amphiprion_ocellaris
ENSMAMG00000012236	-	100	92.208	ENSAPEG00000001489	-	100	91.234	Amphiprion_percula
ENSMAMG00000012236	-	85	80.156	ENSAPEG00000019962	-	81	84.190	Amphiprion_percula
ENSMAMG00000012236	-	100	91.586	ENSATEG00000011734	-	99	92.491	Anabas_testudineus
ENSMAMG00000012236	-	84	83.083	ENSATEG00000018006	-	79	89.352	Anabas_testudineus
ENSMAMG00000012236	-	74	54.545	ENSAPLG00000015574	RALYL	78	55.459	Anas_platyrhynchos
ENSMAMG00000012236	-	94	47.440	ENSACAG00000028464	RALYL	77	54.701	Anolis_carolinensis
ENSMAMG00000012236	-	74	58.716	ENSANAG00000023383	RALYL	76	58.986	Aotus_nancymaae
ENSMAMG00000012236	-	92	90.493	ENSACLG00000000995	-	92	90.845	Astatotilapia_calliptera
ENSMAMG00000012236	-	84	80.827	ENSACLG00000005707	-	86	84.190	Astatotilapia_calliptera
ENSMAMG00000012236	-	92	90.141	ENSACLG00000013636	-	90	90.493	Astatotilapia_calliptera
ENSMAMG00000012236	-	84	81.081	ENSAMXG00000034915	zgc:55733	86	81.048	Astyanax_mexicanus
ENSMAMG00000012236	-	67	79.592	ENSAMXG00000042946	hnrnpc	97	81.675	Astyanax_mexicanus
ENSMAMG00000012236	-	74	58.257	ENSCJAG00000000402	RALYL	76	57.870	Callithrix_jacchus
ENSMAMG00000012236	-	94	47.931	ENSCPOG00000012314	RALYL	77	55.983	Cavia_porcellus
ENSMAMG00000012236	-	94	51.079	ENSCCAG00000025003	RALYL	77	78.481	Cebus_capucinus
ENSMAMG00000012236	-	74	58.716	ENSCATG00000042145	RALYL	76	58.986	Cercocebus_atys
ENSMAMG00000012236	-	74	54.783	ENSCLAG00000005228	RALYL	77	55.983	Chinchilla_lanigera
ENSMAMG00000012236	-	72	53.982	ENSCHOG00000013228	RALYL	75	53.097	Choloepus_hoffmanni
ENSMAMG00000012236	-	74	58.716	ENSCANG00000039144	RALYL	76	58.986	Colobus_angolensis_palliatus
ENSMAMG00000012236	-	74	54.113	ENSCGRG00001009241	Ralyl	77	55.022	Cricetulus_griseus_chok1gshd
ENSMAMG00000012236	-	84	76.984	ENSCSEG00000021349	-	79	79.528	Cynoglossus_semilaevis
ENSMAMG00000012236	-	74	80.093	ENSCSEG00000019769	-	72	82.629	Cynoglossus_semilaevis
ENSMAMG00000012236	-	81	85.827	ENSCVAG00000016981	-	89	76.207	Cyprinodon_variegatus
ENSMAMG00000012236	-	87	75.940	ENSCVAG00000002797	-	91	72.901	Cyprinodon_variegatus
ENSMAMG00000012236	-	90	81.295	ENSDARG00000103845	zgc:55733	90	82.258	Danio_rerio
ENSMAMG00000012236	-	79	79.435	ENSDARG00000053810	hnrnpc	78	80.159	Danio_rerio
ENSMAMG00000012236	-	74	54.978	ENSDORG00000003721	Ralyl	77	56.410	Dipodomys_ordii
ENSMAMG00000012236	-	56	56.897	ENSETEG00000014028	RALYL	85	59.412	Echinops_telfairi
ENSMAMG00000012236	-	71	50.481	ENSEBUG00000006049	RALYL	76	47.907	Eptatretus_burgeri
ENSMAMG00000012236	-	74	46.903	ENSEBUG00000012363	hnrnpc	68	48.246	Eptatretus_burgeri
ENSMAMG00000012236	-	94	47.766	ENSEEUG00000007202	RALYL	78	56.652	Erinaceus_europaeus
ENSMAMG00000012236	-	84	82.090	ENSELUG00000004132	-	87	82.879	Esox_lucius
ENSMAMG00000012236	-	95	71.287	ENSELUG00000007714	-	88	83.012	Esox_lucius
ENSMAMG00000012236	-	72	58.140	ENSFALG00000008647	RALYL	97	58.411	Ficedula_albicollis
ENSMAMG00000012236	-	82	80.812	ENSFHEG00000007278	-	94	72.903	Fundulus_heteroclitus
ENSMAMG00000012236	-	92	86.316	ENSFHEG00000003605	-	93	84.561	Fundulus_heteroclitus
ENSMAMG00000012236	-	74	57.727	ENSGALG00000036938	RALYL	76	55.022	Gallus_gallus
ENSMAMG00000012236	-	92	84.561	ENSGAFG00000020486	-	93	83.509	Gambusia_affinis
ENSMAMG00000012236	-	99	74.237	ENSGAFG00000020992	-	90	76.400	Gambusia_affinis
ENSMAMG00000012236	-	68	80.769	ENSGACG00000018932	-	87	73.953	Gasterosteus_aculeatus
ENSMAMG00000012236	-	82	84.615	ENSGACG00000017772	-	96	84.524	Gasterosteus_aculeatus
ENSMAMG00000012236	-	74	58.716	ENSGGOG00000000841	RALYL	76	58.986	Gorilla_gorilla
ENSMAMG00000012236	-	92	90.845	ENSHBUG00000018342	-	92	91.197	Haplochromis_burtoni
ENSMAMG00000012236	-	84	81.203	ENSHBUG00000010527	-	79	83.922	Haplochromis_burtoni
ENSMAMG00000012236	-	74	54.348	ENSHGLG00000004866	RALYL	77	55.983	Heterocephalus_glaber_female
ENSMAMG00000012236	-	74	54.348	ENSHGLG00100017480	RALYL	77	55.983	Heterocephalus_glaber_male
ENSMAMG00000012236	-	83	80.812	ENSHCOG00000012333	hnrnpc	87	78.067	Hippocampus_comes
ENSMAMG00000012236	-	84	82.239	ENSIPUG00000008666	zgc:55733	93	86.730	Ictalurus_punctatus
ENSMAMG00000012236	-	83	81.783	ENSIPUG00000011271	hnrnpc	99	82.819	Ictalurus_punctatus
ENSMAMG00000012236	-	74	54.545	ENSSTOG00000012583	RALYL	78	55.983	Ictidomys_tridecemlineatus
ENSMAMG00000012236	-	91	90.391	ENSKMAG00000011170	-	91	89.753	Kryptolebias_marmoratus
ENSMAMG00000012236	-	84	78.656	ENSKMAG00000018265	-	80	81.712	Kryptolebias_marmoratus
ENSMAMG00000012236	-	99	82.935	ENSLBEG00000006979	-	99	83.276	Labrus_bergylta
ENSMAMG00000012236	-	84	82.677	ENSLBEG00000006193	-	79	85.771	Labrus_bergylta
ENSMAMG00000012236	-	100	78.033	ENSLBEG00000024418	-	99	79.139	Labrus_bergylta
ENSMAMG00000012236	-	85	71.747	ENSLOCG00000002560	hnrnpc	89	72.481	Lepisosteus_oculatus
ENSMAMG00000012236	-	74	58.716	ENSMNEG00000033288	RALYL	76	58.986	Macaca_nemestrina
ENSMAMG00000012236	-	74	58.716	ENSMLEG00000038284	RALYL	76	58.986	Mandrillus_leucophaeus
ENSMAMG00000012236	-	84	80.827	ENSMZEG00005024249	-	80	84.190	Maylandia_zebra
ENSMAMG00000012236	-	92	90.493	ENSMZEG00005020460	-	92	90.845	Maylandia_zebra
ENSMAMG00000012236	-	74	54.113	ENSMAUG00000015149	Ralyl	77	55.022	Mesocricetus_auratus
ENSMAMG00000012236	-	94	50.179	ENSMICG00000005558	RALYL	80	78.481	Microcebus_murinus
ENSMAMG00000012236	-	94	46.622	ENSMOCG00000017371	Ralyl	77	55.022	Microtus_ochrogaster
ENSMAMG00000012236	-	85	88.550	ENSMMOG00000021465	-	88	92.000	Mola_mola
ENSMAMG00000012236	-	83	79.518	ENSMMOG00000019520	-	82	88.152	Mola_mola
ENSMAMG00000012236	-	84	85.115	ENSMALG00000014623	-	79	84.861	Monopterus_albus
ENSMAMG00000012236	-	81	84.711	ENSMALG00000007520	-	90	85.547	Monopterus_albus
ENSMAMG00000012236	-	74	53.680	ENSMUSG00000039717	Ralyl	93	77.215	Mus_musculus
ENSMAMG00000012236	-	74	55.844	ENSMPUG00000010724	RALYL	77	54.585	Mustela_putorius_furo
ENSMAMG00000012236	-	94	46.622	ENSNGAG00000013375	Ralyl	77	55.022	Nannospalax_galili
ENSMAMG00000012236	-	84	81.203	ENSNBRG00000015676	-	76	87.907	Neolamprologus_brichardi
ENSMAMG00000012236	-	100	87.542	ENSNBRG00000004912	-	97	91.126	Neolamprologus_brichardi
ENSMAMG00000012236	-	74	58.716	ENSNLEG00000002702	RALYL	72	58.986	Nomascus_leucogenys
ENSMAMG00000012236	-	61	51.295	ENSOPRG00000013650	-	98	50.251	Ochotona_princeps
ENSMAMG00000012236	-	74	54.274	ENSODEG00000001012	RALYL	77	55.556	Octodon_degus
ENSMAMG00000012236	-	84	81.203	ENSONIG00000018350	-	79	83.922	Oreochromis_niloticus
ENSMAMG00000012236	-	95	88.591	ENSONIG00000007859	-	96	88.255	Oreochromis_niloticus
ENSMAMG00000012236	-	84	78.077	ENSORLG00000003144	-	79	81.061	Oryzias_latipes
ENSMAMG00000012236	-	92	78.947	ENSORLG00000009999	-	82	81.275	Oryzias_latipes
ENSMAMG00000012236	-	92	78.596	ENSORLG00020018228	hnrnpc	82	80.876	Oryzias_latipes_hni
ENSMAMG00000012236	-	92	78.947	ENSORLG00015019755	-	82	81.275	Oryzias_latipes_hsok
ENSMAMG00000012236	-	84	78.077	ENSORLG00015009460	-	79	81.061	Oryzias_latipes_hsok
ENSMAMG00000012236	-	86	82.022	ENSOMEG00000020488	-	87	82.397	Oryzias_melastigma
ENSMAMG00000012236	-	84	81.423	ENSOMEG00000022665	-	80	84.436	Oryzias_melastigma
ENSMAMG00000012236	-	74	58.716	ENSPPAG00000038705	RALYL	76	58.986	Pan_paniscus
ENSMAMG00000012236	-	74	58.636	ENSPPRG00000018612	RALYL	76	57.339	Panthera_pardus
ENSMAMG00000012236	-	74	58.636	ENSPTIG00000020331	RALYL	76	57.339	Panthera_tigris_altaica
ENSMAMG00000012236	-	74	58.716	ENSPTRG00000020381	RALYL	76	58.986	Pan_troglodytes
ENSMAMG00000012236	-	74	58.716	ENSPANG00000029305	RALYL	76	58.986	Papio_anubis
ENSMAMG00000012236	-	90	79.649	ENSPKIG00000022837	-	81	85.603	Paramormyrops_kingsleyae
ENSMAMG00000012236	-	90	81.533	ENSPKIG00000008592	-	87	82.609	Paramormyrops_kingsleyae
ENSMAMG00000012236	-	74	54.545	ENSPSIG00000011135	RALYL	76	55.128	Pelodiscus_sinensis
ENSMAMG00000012236	-	70	79.208	ENSPMGG00000017774	-	94	66.364	Periophthalmus_magnuspinnatus
ENSMAMG00000012236	-	74	87.736	ENSPMGG00000013144	-	82	87.736	Periophthalmus_magnuspinnatus
ENSMAMG00000012236	-	74	54.113	ENSPEMG00000016447	Ralyl	77	55.022	Peromyscus_maniculatus_bairdii
ENSMAMG00000012236	-	72	54.185	ENSPMAG00000002407	RALYL	97	54.222	Petromyzon_marinus
ENSMAMG00000012236	-	92	86.713	ENSPFOG00000001583	-	93	85.315	Poecilia_formosa
ENSMAMG00000012236	-	98	70.588	ENSPFOG00000002643	-	81	81.538	Poecilia_formosa
ENSMAMG00000012236	-	92	85.614	ENSPLAG00000015305	-	93	84.211	Poecilia_latipinna
ENSMAMG00000012236	-	84	79.365	ENSPLAG00000000061	-	79	82.812	Poecilia_latipinna
ENSMAMG00000012236	-	92	86.667	ENSPMEG00000004802	-	93	84.912	Poecilia_mexicana
ENSMAMG00000012236	-	84	79.365	ENSPMEG00000016524	-	78	84.980	Poecilia_mexicana
ENSMAMG00000012236	-	92	85.614	ENSPREG00000007928	-	93	84.211	Poecilia_reticulata
ENSMAMG00000012236	-	84	78.571	ENSPREG00000001852	-	85	82.031	Poecilia_reticulata
ENSMAMG00000012236	-	74	48.585	ENSPPYG00000018710	-	70	52.020	Pongo_abelii
ENSMAMG00000012236	-	94	47.119	ENSPVAG00000010821	RALYL	76	55.652	Pteropus_vampyrus
ENSMAMG00000012236	-	99	73.883	ENSPNYG00000003747	-	85	83.922	Pundamilia_nyererei
ENSMAMG00000012236	-	92	85.252	ENSPNYG00000020293	-	86	92.800	Pundamilia_nyererei
ENSMAMG00000012236	-	78	83.333	ENSPNAG00000015686	hnrnpc	86	82.400	Pygocentrus_nattereri
ENSMAMG00000012236	-	85	73.930	ENSPNAG00000019200	zgc:55733	83	74.806	Pygocentrus_nattereri
ENSMAMG00000012236	-	74	58.716	ENSRROG00000023925	RALYL	82	76.543	Rhinopithecus_roxellana
ENSMAMG00000012236	-	84	78.927	ENSSFOG00015012924	-	80	97.468	Scleropages_formosus
ENSMAMG00000012236	-	97	68.421	ENSSFOG00015012015	-	94	76.518	Scleropages_formosus
ENSMAMG00000012236	-	87	87.732	ENSSMAG00000013592	-	84	86.415	Scophthalmus_maximus
ENSMAMG00000012236	-	99	71.478	ENSSMAG00000011147	-	95	76.527	Scophthalmus_maximus
ENSMAMG00000012236	-	92	93.640	ENSSDUG00000001723	-	92	92.580	Seriola_dumerili
ENSMAMG00000012236	-	98	78.457	ENSSDUG00000006730	-	80	86.508	Seriola_dumerili
ENSMAMG00000012236	-	84	86.312	ENSSLDG00000007474	-	87	86.508	Seriola_lalandi_dorsalis
ENSMAMG00000012236	-	90	93.165	ENSSLDG00000007454	-	87	92.830	Seriola_lalandi_dorsalis
ENSMAMG00000012236	-	69	74.038	ENSSARG00000002374	RALYL	84	45.041	Sorex_araneus
ENSMAMG00000012236	-	84	83.333	ENSSPAG00000013996	-	79	84.980	Stegastes_partitus
ENSMAMG00000012236	-	91	94.286	ENSSPAG00000023204	-	100	92.532	Stegastes_partitus
ENSMAMG00000012236	-	74	54.545	ENSTGUG00000011689	RALYL	78	55.459	Taeniopygia_guttata
ENSMAMG00000012236	-	84	85.769	ENSTRUG00000020158	-	82	87.550	Takifugu_rubripes
ENSMAMG00000012236	-	81	81.102	ENSTNIG00000000334	-	93	80.952	Tetraodon_nigroviridis
ENSMAMG00000012236	-	82	83.012	ENSTNIG00000007427	-	83	83.529	Tetraodon_nigroviridis
ENSMAMG00000012236	-	74	49.123	ENSTBEG00000005551	RALYL	88	49.780	Tupaia_belangeri
ENSMAMG00000012236	-	74	51.282	ENSTTRG00000015762	RALYL	78	52.632	Tursiops_truncatus
ENSMAMG00000012236	-	74	53.425	ENSVPAG00000008501	RALYL	76	53.670	Vicugna_pacos
ENSMAMG00000012236	-	85	83.529	ENSXCOG00000006552	-	81	82.573	Xiphophorus_couchianus
ENSMAMG00000012236	-	54	88.957	ENSXCOG00000019434	-	94	75.336	Xiphophorus_couchianus
ENSMAMG00000012236	-	84	78.571	ENSXMAG00000022849	-	83	82.031	Xiphophorus_maculatus
ENSMAMG00000012236	-	92	85.263	ENSXMAG00000009333	-	93	83.509	Xiphophorus_maculatus