EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMAMG00000012869 (Gene tree)
Gene ID
113121838
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Mastacembelus_armatus
Status
putative
Strand
Plus strand
Length
6348 bases
Position
chrOOHQ01000089.1:15540063-15546410
Accession
113121838
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMAMP00000019115LSMPF01423.224.1e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMAMT00000019612-3981-ENSMAMP0000001911591 (aa)XP_026148454UPI000E45401F
Gene Model
Click here to download ENSMAMG00000012869's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000012869's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMAMG00000012869lsm58930.588ENSMAMG00000023509snrpe9030.588
ENSMAMG00000012869lsm58234.667ENSMAMG00000012807lsm37434.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMAMG00000012869lsm510091.209ENSG00000106355LSM510091.935Homo_sapiens
ENSMAMG00000012869lsm59091.463ENSAPOG00000011743LSM510093.548Acanthochromis_polyacanthus
ENSMAMG00000012869lsm510093.407ENSAPOG00000020779LSM510093.407Acanthochromis_polyacanthus
ENSMAMG00000012869lsm510091.209ENSAMEG00000006700LSM510091.209Ailuropoda_melanoleuca
ENSMAMG00000012869lsm510093.407ENSAOCG00000001636lsm510093.407Amphiprion_ocellaris
ENSMAMG00000012869lsm510093.407ENSAPEG00000008151lsm510093.407Amphiprion_percula
ENSMAMG00000012869lsm56893.548ENSAPEG00000008201lsm510093.548Amphiprion_percula
ENSMAMG00000012869lsm59089.024ENSATEG00000020470lsm510056.044Anabas_testudineus
ENSMAMG00000012869lsm58193.243ENSAPLG00000008171LSM510093.243Anas_platyrhynchos
ENSMAMG00000012869lsm56291.071ENSACAG00000009530LSM59391.071Anolis_carolinensis
ENSMAMG00000012869lsm510090.110ENSANAG00000034409-10090.110Aotus_nancymaae
ENSMAMG00000012869lsm510072.527ENSANAG00000037758-10072.527Aotus_nancymaae
ENSMAMG00000012869lsm59986.667ENSANAG00000024192-9486.667Aotus_nancymaae
ENSMAMG00000012869lsm59691.954ENSACLG00000012891lsm59991.954Astatotilapia_calliptera
ENSMAMG00000012869lsm510078.723ENSAMXG00000035543lsm510078.723Astyanax_mexicanus
ENSMAMG00000012869lsm55375.000ENSBTAG00000052014-6375.000Bos_taurus
ENSMAMG00000012869lsm510091.209ENSBTAG00000002332LSM510091.209Bos_taurus
ENSMAMG00000012869lsm510070.330WBGene00003079lsm-510070.330Caenorhabditis_elegans
ENSMAMG00000012869lsm59978.889ENSCJAG00000005678-10078.889Callithrix_jacchus
ENSMAMG00000012869lsm510091.209ENSCJAG00000047379LSM58086.275Callithrix_jacchus
ENSMAMG00000012869lsm55586.000ENSCAFG00000030781-5886.000Canis_familiaris
ENSMAMG00000012869lsm510090.110ENSCAFG00000019261-10090.110Canis_familiaris
ENSMAMG00000012869lsm510091.209ENSCAFG00020004946LSM510091.209Canis_lupus_dingo
ENSMAMG00000012869lsm510091.209ENSCHIG00000024539LSM510091.209Capra_hircus
ENSMAMG00000012869lsm58172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSMAMG00000012869lsm510089.011ENSCHIG00000004079-10089.011Capra_hircus
ENSMAMG00000012869lsm510079.121ENSTSYG00000028728-10079.121Carlito_syrichta
ENSMAMG00000012869lsm510067.033ENSTSYG00000036637-10067.033Carlito_syrichta
ENSMAMG00000012869lsm510091.209ENSTSYG00000006449-10091.209Carlito_syrichta
ENSMAMG00000012869lsm510075.824ENSTSYG00000026530-9175.824Carlito_syrichta
ENSMAMG00000012869lsm58286.667ENSCAPG00000006980LSM510086.667Cavia_aperea
ENSMAMG00000012869lsm510091.209ENSCPOG00000036386LSM510091.209Cavia_porcellus
ENSMAMG00000012869lsm510089.011ENSCCAG00000032123-10089.011Cebus_capucinus
ENSMAMG00000012869lsm510063.736ENSCCAG00000037334-10063.736Cebus_capucinus
ENSMAMG00000012869lsm510091.209ENSCCAG00000037808-10091.209Cebus_capucinus
ENSMAMG00000012869lsm510072.527ENSCCAG00000032792-10072.527Cebus_capucinus
ENSMAMG00000012869lsm510090.110ENSCCAG00000000821-10090.110Cebus_capucinus
ENSMAMG00000012869lsm510091.209ENSCATG00000040218LSM510091.935Cercocebus_atys
ENSMAMG00000012869lsm59981.111ENSCATG00000014790-9589.091Cercocebus_atys
ENSMAMG00000012869lsm510091.209ENSCLAG00000000202LSM510091.209Chinchilla_lanigera
ENSMAMG00000012869lsm510078.022ENSCLAG00000005062-9078.022Chinchilla_lanigera
ENSMAMG00000012869lsm58292.000ENSCHOG00000005335LSM59992.000Choloepus_hoffmanni
ENSMAMG00000012869lsm510091.209ENSCPBG00000013685LSM510091.209Chrysemys_picta_bellii
ENSMAMG00000012869lsm59781.818ENSCING00000020625-9981.818Ciona_intestinalis
ENSMAMG00000012869lsm59582.558ENSCSAVG00000001439-9882.558Ciona_savignyi
ENSMAMG00000012869lsm510091.209ENSCANG00000039909LSM510091.935Colobus_angolensis_palliatus
ENSMAMG00000012869lsm510091.209ENSCGRG00001015461Lsm510091.209Cricetulus_griseus_chok1gshd
ENSMAMG00000012869lsm58293.333ENSCGRG00000007677Lsm510093.333Cricetulus_griseus_crigri
ENSMAMG00000012869lsm510057.143ENSCSEG00000015286lsm510057.143Cynoglossus_semilaevis
ENSMAMG00000012869lsm510091.209ENSCVAG00000004262lsm510091.209Cyprinodon_variegatus
ENSMAMG00000012869lsm510092.308ENSDARG00000071573lsm510095.161Danio_rerio
ENSMAMG00000012869lsm59680.460ENSDNOG00000049495-9680.460Dasypus_novemcinctus
ENSMAMG00000012869lsm510091.209ENSDNOG00000034958LSM510091.209Dasypus_novemcinctus
ENSMAMG00000012869lsm510091.209ENSDORG00000009422Lsm510091.209Dipodomys_ordii
ENSMAMG00000012869lsm59878.652FBgn0035675CG66109878.652Drosophila_melanogaster
ENSMAMG00000012869lsm510091.209ENSETEG00000018068LSM510091.209Echinops_telfairi
ENSMAMG00000012869lsm59860.674ENSETEG00000000777-9960.674Echinops_telfairi
ENSMAMG00000012869lsm59968.889ENSETEG00000001469-9968.889Echinops_telfairi
ENSMAMG00000012869lsm59871.910ENSETEG00000010651-9971.910Echinops_telfairi
ENSMAMG00000012869lsm58175.676ENSETEG00000016074-9875.676Echinops_telfairi
ENSMAMG00000012869lsm510090.110ENSEBUG00000008540lsm510090.110Eptatretus_burgeri
ENSMAMG00000012869lsm510091.209ENSEASG00005003500LSM510091.209Equus_asinus_asinus
ENSMAMG00000012869lsm510079.121ENSECAG00000018445LSM510079.121Equus_caballus
ENSMAMG00000012869lsm56387.719ENSEEUG00000004102LSM59587.719Erinaceus_europaeus
ENSMAMG00000012869lsm510092.308ENSELUG00000007792lsm510092.308Esox_lucius
ENSMAMG00000012869lsm510091.209ENSFCAG00000000230LSM510091.209Felis_catus
ENSMAMG00000012869lsm58493.421ENSFALG00000001892LSM59293.421Ficedula_albicollis
ENSMAMG00000012869lsm59063.415ENSFDAG00000008685-9763.415Fukomys_damarensis
ENSMAMG00000012869lsm510091.209ENSFDAG00000008767LSM510091.209Fukomys_damarensis
ENSMAMG00000012869lsm59974.444ENSFHEG00000004011lsm59774.444Fundulus_heteroclitus
ENSMAMG00000012869lsm59991.111ENSGMOG00000018235lsm510091.111Gadus_morhua
ENSMAMG00000012869lsm510090.110ENSGALG00000041625LSM510090.110Gallus_gallus
ENSMAMG00000012869lsm56893.548ENSGAFG00000016824lsm510093.548Gambusia_affinis
ENSMAMG00000012869lsm510092.308ENSGACG00000005528lsm510092.308Gasterosteus_aculeatus
ENSMAMG00000012869lsm510091.209ENSGAGG00000015593LSM510091.209Gopherus_agassizii
ENSMAMG00000012869lsm510091.209ENSGGOG00000043469LSM510091.209Gorilla_gorilla
ENSMAMG00000012869lsm59691.954ENSHBUG00000013773lsm59991.954Haplochromis_burtoni
ENSMAMG00000012869lsm510091.209ENSHGLG00000011765LSM510091.209Heterocephalus_glaber_female
ENSMAMG00000012869lsm510087.912ENSHGLG00100015610LSM510087.912Heterocephalus_glaber_male
ENSMAMG00000012869lsm510058.242ENSHCOG00000008288lsm510058.242Hippocampus_comes
ENSMAMG00000012869lsm510091.209ENSIPUG00000021095LSM510091.209Ictalurus_punctatus
ENSMAMG00000012869lsm510091.209ENSSTOG00000012662LSM510091.209Ictidomys_tridecemlineatus
ENSMAMG00000012869lsm59277.907ENSSTOG00000033886-9777.907Ictidomys_tridecemlineatus
ENSMAMG00000012869lsm58783.544ENSJJAG00000004475-10083.544Jaculus_jaculus
ENSMAMG00000012869lsm510062.637ENSJJAG00000016144-9262.637Jaculus_jaculus
ENSMAMG00000012869lsm510089.011ENSJJAG00000012145-10089.011Jaculus_jaculus
ENSMAMG00000012869lsm510094.505ENSKMAG00000021861lsm510094.505Kryptolebias_marmoratus
ENSMAMG00000012869lsm510082.418ENSLBEG00000009235LSM57082.418Labrus_bergylta
ENSMAMG00000012869lsm56278.571ENSLBEG00000017379lsm59278.571Labrus_bergylta
ENSMAMG00000012869lsm510091.209ENSLACG00000022448LSM510091.209Latimeria_chalumnae
ENSMAMG00000012869lsm510093.407ENSLOCG00000012903lsm510093.407Lepisosteus_oculatus
ENSMAMG00000012869lsm510091.209ENSLAFG00000029579LSM510091.209Loxodonta_africana
ENSMAMG00000012869lsm510064.835ENSLAFG00000027938-10064.835Loxodonta_africana
ENSMAMG00000012869lsm510091.209ENSMFAG00000038508LSM510091.209Macaca_fascicularis
ENSMAMG00000012869lsm55389.583ENSMFAG00000031187-8189.583Macaca_fascicularis
ENSMAMG00000012869lsm510090.110ENSMFAG00000030152-10090.110Macaca_fascicularis
ENSMAMG00000012869lsm510090.110ENSMMUG00000030131-10090.110Macaca_mulatta
ENSMAMG00000012869lsm55686.275ENSMMUG00000045129-8086.275Macaca_mulatta
ENSMAMG00000012869lsm59982.222ENSMMUG00000039822-10082.222Macaca_mulatta
ENSMAMG00000012869lsm510090.110ENSMNEG00000037935-10090.110Macaca_nemestrina
ENSMAMG00000012869lsm510091.209ENSMNEG00000015331LSM510091.935Macaca_nemestrina
ENSMAMG00000012869lsm510091.209ENSMLEG00000024945LSM510091.209Mandrillus_leucophaeus
ENSMAMG00000012869lsm59880.899ENSMLEG00000034037-10080.899Mandrillus_leucophaeus
ENSMAMG00000012869lsm59691.954ENSMZEG00005019554lsm59991.954Maylandia_zebra
ENSMAMG00000012869lsm510090.110ENSMGAG00000012117LSM510090.110Meleagris_gallopavo
ENSMAMG00000012869lsm510090.110ENSMAUG00000008132-10090.110Mesocricetus_auratus
ENSMAMG00000012869lsm510091.209ENSMAUG00000012222Lsm510091.209Mesocricetus_auratus
ENSMAMG00000012869lsm510091.209ENSMICG00000005353LSM510091.209Microcebus_murinus
ENSMAMG00000012869lsm59970.000ENSMICG00000033928-9670.000Microcebus_murinus
ENSMAMG00000012869lsm510091.209ENSMOCG00000012018Lsm510091.209Microtus_ochrogaster
ENSMAMG00000012869lsm58494.737ENSMMOG00000004026lsm58794.737Mola_mola
ENSMAMG00000012869lsm56891.935ENSMODG00000013274-10091.935Monodelphis_domestica
ENSMAMG00000012869lsm56896.774ENSMALG00000010343lsm510096.774Monopterus_albus
ENSMAMG00000012869lsm510091.209MGP_CAROLIEiJ_G0028421Lsm59895.122Mus_caroli
ENSMAMG00000012869lsm510091.209ENSMUSG00000091625Lsm59895.122Mus_musculus
ENSMAMG00000012869lsm510091.209MGP_PahariEiJ_G0022171Lsm59895.122Mus_pahari
ENSMAMG00000012869lsm510091.209MGP_SPRETEiJ_G0029423Lsm59895.122Mus_spretus
ENSMAMG00000012869lsm510091.209ENSMLUG00000017028LSM510091.209Myotis_lucifugus
ENSMAMG00000012869lsm510079.570ENSNGAG00000017707-10079.570Nannospalax_galili
ENSMAMG00000012869lsm510091.209ENSNGAG00000024142Lsm510091.209Nannospalax_galili
ENSMAMG00000012869lsm59971.111ENSNGAG00000022569-9671.111Nannospalax_galili
ENSMAMG00000012869lsm56392.982ENSNBRG00000011386lsm57692.982Neolamprologus_brichardi
ENSMAMG00000012869lsm510091.209ENSNLEG00000015268LSM510091.209Nomascus_leucogenys
ENSMAMG00000012869lsm58293.333ENSOPRG00000002443LSM510093.333Ochotona_princeps
ENSMAMG00000012869lsm510091.209ENSODEG00000019072-10091.209Octodon_degus
ENSMAMG00000012869lsm510091.209ENSODEG00000008258-10091.209Octodon_degus
ENSMAMG00000012869lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSMAMG00000012869lsm510091.209ENSOCUG00000029043LSM510091.209Oryctolagus_cuniculus
ENSMAMG00000012869lsm510091.209ENSORLG00000027725lsm55891.209Oryzias_latipes
ENSMAMG00000012869lsm59687.356ENSORLG00020003019lsm58687.356Oryzias_latipes_hni
ENSMAMG00000012869lsm510091.209ENSORLG00015003338lsm510091.209Oryzias_latipes_hsok
ENSMAMG00000012869lsm510090.110ENSOMEG00000001078lsm510090.110Oryzias_melastigma
ENSMAMG00000012869lsm510091.209ENSOGAG00000013892LSM510091.209Otolemur_garnettii
ENSMAMG00000012869lsm510091.209ENSOARG00000006944LSM510091.209Ovis_aries
ENSMAMG00000012869lsm510091.209ENSPPAG00000003697-10091.209Pan_paniscus
ENSMAMG00000012869lsm510091.209ENSPPRG00000002550LSM510091.209Panthera_pardus
ENSMAMG00000012869lsm510091.209ENSPTIG00000015604LSM510091.209Panthera_tigris_altaica
ENSMAMG00000012869lsm510091.209ENSPTRG00000019057LSM510091.209Pan_troglodytes
ENSMAMG00000012869lsm510079.121ENSPTRG00000049488-10079.121Pan_troglodytes
ENSMAMG00000012869lsm59982.222ENSPANG00000032538-10082.222Papio_anubis
ENSMAMG00000012869lsm510091.209ENSPANG00000032179-10091.209Papio_anubis
ENSMAMG00000012869lsm510089.011ENSPANG00000033477-10089.011Papio_anubis
ENSMAMG00000012869lsm510093.407ENSPKIG00000011910lsm510093.407Paramormyrops_kingsleyae
ENSMAMG00000012869lsm58193.243ENSPSIG00000014796LSM510093.243Pelodiscus_sinensis
ENSMAMG00000012869lsm56893.548ENSPMGG00000011699lsm510093.548Periophthalmus_magnuspinnatus
ENSMAMG00000012869lsm510065.934ENSPEMG00000022375-10065.934Peromyscus_maniculatus_bairdii
ENSMAMG00000012869lsm55291.489ENSPEMG00000019994-8091.489Peromyscus_maniculatus_bairdii
ENSMAMG00000012869lsm510091.209ENSPFOG00000001433lsm510091.209Poecilia_formosa
ENSMAMG00000012869lsm510091.209ENSPLAG00000009665lsm510091.209Poecilia_latipinna
ENSMAMG00000012869lsm510091.209ENSPMEG00000022265lsm510091.209Poecilia_mexicana
ENSMAMG00000012869lsm56893.548ENSPREG00000022452lsm510093.548Poecilia_reticulata
ENSMAMG00000012869lsm510089.011ENSPPYG00000017661LSM510089.011Pongo_abelii
ENSMAMG00000012869lsm58991.358ENSPCAG00000013740LSM510091.358Procavia_capensis
ENSMAMG00000012869lsm510091.209ENSPVAG00000009786LSM510091.209Pteropus_vampyrus
ENSMAMG00000012869lsm59691.954ENSPNYG00000022236lsm59991.954Pundamilia_nyererei
ENSMAMG00000012869lsm510091.209ENSPNAG00000001887lsm510091.209Pygocentrus_nattereri
ENSMAMG00000012869lsm510088.043ENSRNOG00000027305AABR07065089.110088.043Rattus_norvegicus
ENSMAMG00000012869lsm510091.209ENSRNOG00000042126Lsm510091.209Rattus_norvegicus
ENSMAMG00000012869lsm510090.110ENSRBIG00000024431-10090.110Rhinopithecus_bieti
ENSMAMG00000012869lsm510091.209ENSRBIG00000030714-10091.209Rhinopithecus_bieti
ENSMAMG00000012869lsm510091.209ENSRBIG00000030340-10091.209Rhinopithecus_bieti
ENSMAMG00000012869lsm510091.209ENSRBIG00000027803-10091.935Rhinopithecus_bieti
ENSMAMG00000012869lsm510091.209ENSRROG00000023884-10091.209Rhinopithecus_roxellana
ENSMAMG00000012869lsm510091.209ENSRROG00000004655-10091.209Rhinopithecus_roxellana
ENSMAMG00000012869lsm510091.209ENSRROG00000042782-10091.935Rhinopithecus_roxellana
ENSMAMG00000012869lsm58545.122YER146W-8845.122Saccharomyces_cerevisiae
ENSMAMG00000012869lsm510069.231ENSSBOG00000034794-10069.231Saimiri_boliviensis_boliviensis
ENSMAMG00000012869lsm510089.011ENSSBOG00000019124-10089.011Saimiri_boliviensis_boliviensis
ENSMAMG00000012869lsm510091.209ENSSBOG00000012312LSM510091.209Saimiri_boliviensis_boliviensis
ENSMAMG00000012869lsm510093.407ENSSFOG00015010099lsm510093.407Scleropages_formosus
ENSMAMG00000012869lsm510057.143ENSSMAG00000007895lsm510057.143Scophthalmus_maximus
ENSMAMG00000012869lsm56893.548ENSSDUG00000010762lsm510093.548Seriola_dumerili
ENSMAMG00000012869lsm510092.308ENSSLDG00000025242lsm510092.308Seriola_lalandi_dorsalis
ENSMAMG00000012869lsm58678.205ENSSLDG00000008014-9378.205Seriola_lalandi_dorsalis
ENSMAMG00000012869lsm510064.835ENSSARG00000003330LSM510064.835Sorex_araneus
ENSMAMG00000012869lsm510089.011ENSSPUG00000002690LSM510090.323Sphenodon_punctatus
ENSMAMG00000012869lsm510058.242ENSSPAG00000005435lsm510058.242Stegastes_partitus
ENSMAMG00000012869lsm510091.209ENSSSCG00000026064-10091.209Sus_scrofa
ENSMAMG00000012869lsm57679.710ENSSSCG00000029661-9679.710Sus_scrofa
ENSMAMG00000012869lsm510089.011ENSTGUG00000017539LSM510089.011Taeniopygia_guttata
ENSMAMG00000012869lsm59082.759ENSTRUG00000017749lsm56582.759Takifugu_rubripes
ENSMAMG00000012869lsm510091.209ENSTNIG00000008695lsm510091.209Tetraodon_nigroviridis
ENSMAMG00000012869lsm510091.209ENSTBEG00000004876LSM510091.209Tupaia_belangeri
ENSMAMG00000012869lsm510091.209ENSTTRG00000004237LSM510091.209Tursiops_truncatus
ENSMAMG00000012869lsm55686.275ENSUAMG00000009786LSM56686.275Ursus_americanus
ENSMAMG00000012869lsm510090.110ENSUMAG00000002625LSM56590.110Ursus_maritimus
ENSMAMG00000012869lsm510091.209ENSVPAG00000009985LSM510091.209Vicugna_pacos
ENSMAMG00000012869lsm510091.209ENSVVUG00000021311LSM510091.209Vulpes_vulpes
ENSMAMG00000012869lsm59089.024ENSXETG00000026465lsm510089.024Xenopus_tropicalis
ENSMAMG00000012869lsm56893.548ENSXCOG00000015348lsm510093.548Xiphophorus_couchianus
ENSMAMG00000012869lsm510091.209ENSXMAG00000029988lsm510091.209Xiphophorus_maculatus

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