EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000013111 (Gene tree)
Gene ID: 113129773
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 39586 bases
Position: chrOOHQ01000082.1:3656352-3695937
Accession: 113129773
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000019519	ResIII	PF04851.15	4.7e-07	1	1
ENSMAMP00000019489	ResIII	PF04851.15	5.4e-07	1	1
ENSMAMP00000019489	BRK	PF07533.16	7.6e-18	1	1
ENSMAMP00000019519	BRK	PF07533.16	7.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000020021	-	10163	-	ENSMAMP00000019519	3360 (aa)	-	-
ENSMAMT00000019991	-	10799	XM_026305877	ENSMAMP00000019489	3572 (aa)	XP_026161662	-

Gene Model

Click here to download ENSMAMG00000013111's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000013111's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000013111	chd6	54	61.923	ENSMAMG00000011569	chd7	63	58.588
ENSMAMG00000013111	chd6	53	76.667	ENSMAMG00000003909	chd9	61	76.667
ENSMAMG00000013111	chd6	50	56.057	ENSMAMG00000016297	chd8	64	55.953

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000013111	chd6	62	77.379	ENSG00000124177	CHD6	99	81.467	Homo_sapiens
ENSMAMG00000013111	chd6	99	84.544	ENSAPOG00000013736	chd6	99	84.765	Acanthochromis_polyacanthus
ENSMAMG00000013111	chd6	69	69.905	ENSAMEG00000009496	CHD6	78	70.078	Ailuropoda_melanoleuca
ENSMAMG00000013111	chd6	99	87.696	ENSATEG00000005608	chd6	99	87.660	Anabas_testudineus
ENSMAMG00000013111	chd6	63	71.281	ENSAPLG00000015592	CHD6	77	74.029	Anas_platyrhynchos
ENSMAMG00000013111	chd6	63	71.623	ENSACAG00000006842	CHD6	77	68.726	Anolis_carolinensis
ENSMAMG00000013111	chd6	62	77.172	ENSANAG00000037548	CHD6	99	81.685	Aotus_nancymaae
ENSMAMG00000013111	chd6	82	67.594	ENSAMXG00000009576	chd6	91	67.577	Astyanax_mexicanus
ENSMAMG00000013111	chd6	64	75.602	ENSBTAG00000005733	CHD6	75	73.148	Bos_taurus
ENSMAMG00000013111	chd6	62	77.172	ENSCJAG00000017920	CHD6	99	81.502	Callithrix_jacchus
ENSMAMG00000013111	chd6	65	73.896	ENSCAFG00000009236	CHD6	74	73.704	Canis_familiaris
ENSMAMG00000013111	chd6	65	73.576	ENSCAFG00020012906	CHD6	95	84.200	Canis_lupus_dingo
ENSMAMG00000013111	chd6	64	75.535	ENSCHIG00000017606	CHD6	69	73.921	Capra_hircus
ENSMAMG00000013111	chd6	56	76.954	ENSTSYG00000014635	CHD6	74	76.793	Carlito_syrichta
ENSMAMG00000013111	chd6	64	74.478	ENSCPOG00000015641	CHD6	77	71.508	Cavia_porcellus
ENSMAMG00000013111	chd6	62	77.241	ENSCCAG00000036828	CHD6	99	81.685	Cebus_capucinus
ENSMAMG00000013111	chd6	62	76.966	ENSCATG00000039248	CHD6	99	81.685	Cercocebus_atys
ENSMAMG00000013111	chd6	65	73.835	ENSCLAG00000013743	CHD6	76	73.614	Chinchilla_lanigera
ENSMAMG00000013111	chd6	62	77.310	ENSCSAG00000013997	CHD6	74	73.576	Chlorocebus_sabaeus
ENSMAMG00000013111	chd6	55	74.149	ENSCHOG00000012647	CHD6	67	79.592	Choloepus_hoffmanni
ENSMAMG00000013111	chd6	64	76.764	ENSCPBG00000019382	CHD6	76	74.823	Chrysemys_picta_bellii
ENSMAMG00000013111	chd6	62	77.310	ENSCANG00000043435	CHD6	99	81.685	Colobus_angolensis_palliatus
ENSMAMG00000013111	chd6	63	75.536	ENSCGRG00001002694	Chd6	77	70.091	Cricetulus_griseus_chok1gshd
ENSMAMG00000013111	chd6	84	70.092	ENSDARG00000017244	chd6	92	70.113	Danio_rerio
ENSMAMG00000013111	chd6	63	76.340	ENSDNOG00000004176	CHD6	74	71.889	Dasypus_novemcinctus
ENSMAMG00000013111	chd6	61	81.507	ENSEASG00005023433	CHD6	95	85.742	Equus_asinus_asinus
ENSMAMG00000013111	chd6	65	74.280	ENSECAG00000011761	CHD6	76	74.027	Equus_caballus
ENSMAMG00000013111	chd6	65	77.659	ENSELUG00000012309	chd6	91	81.322	Esox_lucius
ENSMAMG00000013111	chd6	65	73.896	ENSFCAG00000003572	CHD6	74	73.863	Felis_catus
ENSMAMG00000013111	chd6	60	85.714	ENSFALG00000012563	CHD6	76	72.581	Ficedula_albicollis
ENSMAMG00000013111	chd6	64	74.739	ENSFDAG00000013791	CHD6	76	73.550	Fukomys_damarensis
ENSMAMG00000013111	chd6	65	79.219	ENSGMOG00000011715	chd6	89	83.824	Gadus_morhua
ENSMAMG00000013111	chd6	76	84.543	ENSGACG00000000037	chd6	99	80.647	Gasterosteus_aculeatus
ENSMAMG00000013111	chd6	62	77.379	ENSGGOG00000013123	CHD6	99	81.685	Gorilla_gorilla
ENSMAMG00000013111	chd6	99	85.428	ENSHBUG00000014701	chd6	99	85.205	Haplochromis_burtoni
ENSMAMG00000013111	chd6	66	71.871	ENSHGLG00000004548	CHD6	76	73.359	Heterocephalus_glaber_female
ENSMAMG00000013111	chd6	66	71.871	ENSHGLG00100006401	CHD6	76	73.359	Heterocephalus_glaber_male
ENSMAMG00000013111	chd6	76	80.050	ENSIPUG00000003692	chd6	86	72.426	Ictalurus_punctatus
ENSMAMG00000013111	chd6	64	74.382	ENSSTOG00000013382	CHD6	76	73.172	Ictidomys_tridecemlineatus
ENSMAMG00000013111	chd6	61	76.642	ENSLACG00000010881	CHD6	77	72.594	Latimeria_chalumnae
ENSMAMG00000013111	chd6	63	75.551	ENSLAFG00000012144	CHD6	74	75.000	Loxodonta_africana
ENSMAMG00000013111	chd6	62	77.310	ENSMFAG00000032830	CHD6	99	81.685	Macaca_fascicularis
ENSMAMG00000013111	chd6	62	77.310	ENSMMUG00000020458	CHD6	99	81.685	Macaca_mulatta
ENSMAMG00000013111	chd6	62	77.310	ENSMNEG00000040847	CHD6	99	81.685	Macaca_nemestrina
ENSMAMG00000013111	chd6	62	77.310	ENSMLEG00000031965	CHD6	99	81.685	Mandrillus_leucophaeus
ENSMAMG00000013111	chd6	63	76.377	ENSMGAG00000001121	CHD6	78	71.940	Meleagris_gallopavo
ENSMAMG00000013111	chd6	63	75.484	ENSMICG00000016641	CHD6	99	81.502	Microcebus_murinus
ENSMAMG00000013111	chd6	61	77.859	ENSMODG00000000720	-	78	77.438	Monodelphis_domestica
ENSMAMG00000013111	chd6	64	80.435	MGP_CAROLIEiJ_G0024604	Chd6	92	76.203	Mus_caroli
ENSMAMG00000013111	chd6	64	80.435	ENSMUSG00000057133	Chd6	92	76.378	Mus_musculus
ENSMAMG00000013111	chd6	69	70.772	MGP_PahariEiJ_G0026048	Chd6	89	79.569	Mus_pahari
ENSMAMG00000013111	chd6	64	80.435	MGP_SPRETEiJ_G0025526	Chd6	92	76.378	Mus_spretus
ENSMAMG00000013111	chd6	65	73.371	ENSMPUG00000017695	CHD6	77	73.371	Mustela_putorius_furo
ENSMAMG00000013111	chd6	62	77.310	ENSMLUG00000016247	CHD6	74	72.992	Myotis_lucifugus
ENSMAMG00000013111	chd6	85	89.178	ENSNBRG00000013839	chd6	92	89.178	Neolamprologus_brichardi
ENSMAMG00000013111	chd6	62	75.793	ENSNLEG00000006496	CHD6	74	72.297	Nomascus_leucogenys
ENSMAMG00000013111	chd6	65	71.584	ENSOPRG00000013376	-	77	69.033	Ochotona_princeps
ENSMAMG00000013111	chd6	81	92.724	ENSONIG00000000393	chd6	95	92.657	Oreochromis_niloticus
ENSMAMG00000013111	chd6	59	72.686	ENSOANG00000014347	CHD6	69	71.092	Ornithorhynchus_anatinus
ENSMAMG00000013111	chd6	62	77.379	ENSOCUG00000012394	CHD6	77	71.676	Oryctolagus_cuniculus
ENSMAMG00000013111	chd6	99	71.657	ENSORLG00020021891	chd6	95	94.389	Oryzias_latipes_hni
ENSMAMG00000013111	chd6	63	74.983	ENSOGAG00000002427	CHD6	75	71.473	Otolemur_garnettii
ENSMAMG00000013111	chd6	66	71.528	ENSOARG00000002597	CHD6	77	69.361	Ovis_aries
ENSMAMG00000013111	chd6	65	73.960	ENSPPRG00000014756	CHD6	74	73.832	Panthera_pardus
ENSMAMG00000013111	chd6	65	73.768	ENSPTIG00000011094	CHD6	74	73.735	Panthera_tigris_altaica
ENSMAMG00000013111	chd6	62	77.379	ENSPTRG00000013504	CHD6	99	81.685	Pan_troglodytes
ENSMAMG00000013111	chd6	62	77.310	ENSPANG00000025554	CHD6	99	81.685	Papio_anubis
ENSMAMG00000013111	chd6	73	73.861	ENSPKIG00000005578	chd6	83	74.528	Paramormyrops_kingsleyae
ENSMAMG00000013111	chd6	76	81.130	ENSPMGG00000014877	chd6	96	80.061	Periophthalmus_magnuspinnatus
ENSMAMG00000013111	chd6	64	75.649	ENSPCIG00000028037	CHD6	79	72.057	Phascolarctos_cinereus
ENSMAMG00000013111	chd6	97	77.018	ENSPLAG00000003128	chd6	99	76.576	Poecilia_latipinna
ENSMAMG00000013111	chd6	97	76.535	ENSPREG00000022653	chd6	99	94.322	Poecilia_reticulata
ENSMAMG00000013111	chd6	62	77.310	ENSPPYG00000011016	CHD6	74	73.482	Pongo_abelii
ENSMAMG00000013111	chd6	63	75.501	ENSPCOG00000001089	CHD6	99	81.685	Propithecus_coquereli
ENSMAMG00000013111	chd6	85	87.952	ENSPNYG00000022516	chd6	92	89.613	Pundamilia_nyererei
ENSMAMG00000013111	chd6	78	72.205	ENSPNAG00000012825	chd6	86	73.213	Pygocentrus_nattereri
ENSMAMG00000013111	chd6	63	80.435	ENSRNOG00000016744	Chd6	77	70.882	Rattus_norvegicus
ENSMAMG00000013111	chd6	62	77.310	ENSSBOG00000022089	CHD6	99	81.685	Saimiri_boliviensis_boliviensis
ENSMAMG00000013111	chd6	64	75.862	ENSSHAG00000017072	CHD6	76	75.862	Sarcophilus_harrisii
ENSMAMG00000013111	chd6	75	87.672	ENSSFOG00015012920	chd6	88	87.672	Scleropages_formosus
ENSMAMG00000013111	chd6	63	77.793	ENSSSCG00000007360	CHD6	75	73.866	Sus_scrofa
ENSMAMG00000013111	chd6	66	74.165	ENSTGUG00000003179	CHD6	81	72.294	Taeniopygia_guttata
ENSMAMG00000013111	chd6	77	85.336	ENSTNIG00000017487	chd6	99	85.203	Tetraodon_nigroviridis
ENSMAMG00000013111	chd6	65	74.492	ENSTTRG00000013438	CHD6	75	75.846	Tursiops_truncatus
ENSMAMG00000013111	chd6	63	74.230	ENSUAMG00000024036	CHD6	95	84.200	Ursus_americanus
ENSMAMG00000013111	chd6	65	73.752	ENSUMAG00000002017	CHD6	95	84.200	Ursus_maritimus
ENSMAMG00000013111	chd6	56	69.422	ENSVPAG00000007941	CHD6	66	68.146	Vicugna_pacos
ENSMAMG00000013111	chd6	65	73.960	ENSVVUG00000029164	CHD6	74	73.768	Vulpes_vulpes
ENSMAMG00000013111	chd6	65	68.852	ENSXETG00000021445	chd6	78	64.212	Xenopus_tropicalis