EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000013219 (Gene tree)
Gene ID: 113133807
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 18418 bases
Position: chrOOHQ01000035.1:5664924-5683341
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000020002	XRN_N	PF03159.18	3.5e-96	1	1
ENSMAMP00000020060	XRN_N	PF03159.18	3.8e-96	1	1
ENSMAMP00000020083	XRN_N	PF03159.18	2.2e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000020615	-	1506	-	ENSMAMP00000020083	501 (aa)	-	-
ENSMAMT00000020532	-	4668	-	ENSMAMP00000020002	1555 (aa)	-	-
ENSMAMT00000020592	-	4662	-	ENSMAMP00000020060	1553 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000013219's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000013219's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000013219	xrn1	92	39.665	ENSMAMG00000008633	xrn2	71	41.778

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000013219	xrn1	94	76.907	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSMAMG00000013219	xrn1	92	90.426	ENSAPOG00000000622	xrn1	100	83.725	Acanthochromis_polyacanthus
ENSMAMG00000013219	xrn1	94	76.844	ENSAMEG00000012538	XRN1	92	70.597	Ailuropoda_melanoleuca
ENSMAMG00000013219	xrn1	92	89.218	ENSACIG00000001057	xrn1	99	80.833	Amphilophus_citrinellus
ENSMAMG00000013219	xrn1	99	88.813	ENSAOCG00000014097	xrn1	95	90.640	Amphiprion_ocellaris
ENSMAMG00000013219	xrn1	99	89.498	ENSAPEG00000006620	xrn1	95	89.655	Amphiprion_percula
ENSMAMG00000013219	xrn1	99	81.938	ENSATEG00000009752	xrn1	100	81.938	Anabas_testudineus
ENSMAMG00000013219	xrn1	92	78.224	ENSAPLG00000004905	XRN1	91	70.008	Anas_platyrhynchos
ENSMAMG00000013219	xrn1	92	77.707	ENSACAG00000004985	XRN1	92	70.054	Anolis_carolinensis
ENSMAMG00000013219	xrn1	94	75.460	ENSANAG00000029013	XRN1	99	73.527	Aotus_nancymaae
ENSMAMG00000013219	xrn1	99	87.784	ENSACLG00000004806	xrn1	95	87.706	Astatotilapia_calliptera
ENSMAMG00000013219	xrn1	99	74.903	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSMAMG00000013219	xrn1	94	77.049	ENSBTAG00000011524	XRN1	94	70.741	Bos_taurus
ENSMAMG00000013219	xrn1	92	48.321	WBGene00012730	xrn-1	80	37.920	Caenorhabditis_elegans
ENSMAMG00000013219	xrn1	94	77.113	ENSCJAG00000001872	XRN1	94	70.686	Callithrix_jacchus
ENSMAMG00000013219	xrn1	94	77.664	ENSCAFG00000007783	XRN1	94	71.090	Canis_familiaris
ENSMAMG00000013219	xrn1	94	77.664	ENSCAFG00020009120	XRN1	99	76.850	Canis_lupus_dingo
ENSMAMG00000013219	xrn1	94	76.434	ENSCHIG00000019192	XRN1	91	70.584	Capra_hircus
ENSMAMG00000013219	xrn1	94	76.082	ENSTSYG00000002705	XRN1	94	71.271	Carlito_syrichta
ENSMAMG00000013219	xrn1	74	80.851	ENSCAPG00000004604	-	94	85.581	Cavia_aperea
ENSMAMG00000013219	xrn1	94	77.320	ENSCCAG00000034800	XRN1	99	78.357	Cebus_capucinus
ENSMAMG00000013219	xrn1	94	77.113	ENSCATG00000041794	XRN1	94	70.955	Cercocebus_atys
ENSMAMG00000013219	xrn1	95	76.749	ENSCLAG00000001451	XRN1	99	78.254	Chinchilla_lanigera
ENSMAMG00000013219	xrn1	94	77.320	ENSCSAG00000011265	XRN1	94	71.034	Chlorocebus_sabaeus
ENSMAMG00000013219	xrn1	53	93.506	ENSCHOG00000013961	-	52	93.506	Choloepus_hoffmanni
ENSMAMG00000013219	xrn1	92	59.062	ENSCING00000001334	-	95	72.900	Ciona_intestinalis
ENSMAMG00000013219	xrn1	92	60.043	ENSCSAVG00000008584	-	93	51.548	Ciona_savignyi
ENSMAMG00000013219	xrn1	94	77.320	ENSCANG00000037495	XRN1	99	78.323	Colobus_angolensis_palliatus
ENSMAMG00000013219	xrn1	94	77.113	ENSCGRG00001019411	Xrn1	99	78.730	Cricetulus_griseus_chok1gshd
ENSMAMG00000013219	xrn1	94	77.113	ENSCGRG00000012464	Xrn1	99	78.730	Cricetulus_griseus_crigri
ENSMAMG00000013219	xrn1	92	85.897	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSMAMG00000013219	xrn1	92	84.914	ENSCVAG00000013089	xrn1	99	85.867	Cyprinodon_variegatus
ENSMAMG00000013219	xrn1	99	79.206	ENSDARG00000091652	xrn1	100	83.023	Danio_rerio
ENSMAMG00000013219	xrn1	94	76.701	ENSDORG00000013833	Xrn1	93	71.564	Dipodomys_ordii
ENSMAMG00000013219	xrn1	94	52.008	FBgn0020261	pcm	77	39.662	Drosophila_melanogaster
ENSMAMG00000013219	xrn1	84	70.270	ENSETEG00000003978	XRN1	81	71.074	Echinops_telfairi
ENSMAMG00000013219	xrn1	94	77.500	ENSEASG00005002687	XRN1	99	78.956	Equus_asinus_asinus
ENSMAMG00000013219	xrn1	94	76.844	ENSECAG00000008301	XRN1	94	70.607	Equus_caballus
ENSMAMG00000013219	xrn1	92	78.436	ENSEEUG00000011323	XRN1	85	65.789	Erinaceus_europaeus
ENSMAMG00000013219	xrn1	99	79.547	ENSELUG00000000169	xrn1	94	80.047	Esox_lucius
ENSMAMG00000013219	xrn1	96	67.244	ENSFCAG00000027589	XRN1	99	80.828	Felis_catus
ENSMAMG00000013219	xrn1	92	77.637	ENSFALG00000007021	XRN1	92	70.388	Ficedula_albicollis
ENSMAMG00000013219	xrn1	94	76.495	ENSFDAG00000020494	XRN1	99	78.095	Fukomys_damarensis
ENSMAMG00000013219	xrn1	91	80.392	ENSFHEG00000017356	-	96	80.174	Fundulus_heteroclitus
ENSMAMG00000013219	xrn1	94	80.550	ENSGMOG00000006396	xrn1	84	75.082	Gadus_morhua
ENSMAMG00000013219	xrn1	95	76.434	ENSGALG00000002706	XRN1	92	70.652	Gallus_gallus
ENSMAMG00000013219	xrn1	99	81.121	ENSGACG00000014328	xrn1	98	80.144	Gasterosteus_aculeatus
ENSMAMG00000013219	xrn1	95	74.280	ENSGAGG00000017535	XRN1	91	70.008	Gopherus_agassizii
ENSMAMG00000013219	xrn1	94	76.701	ENSGGOG00000008047	XRN1	94	70.955	Gorilla_gorilla
ENSMAMG00000013219	xrn1	94	84.615	ENSHBUG00000005908	xrn1	98	84.615	Haplochromis_burtoni
ENSMAMG00000013219	xrn1	94	76.701	ENSHGLG00000014476	XRN1	99	77.937	Heterocephalus_glaber_female
ENSMAMG00000013219	xrn1	94	76.701	ENSHGLG00100015130	XRN1	99	77.937	Heterocephalus_glaber_male
ENSMAMG00000013219	xrn1	92	84.599	ENSHCOG00000014062	xrn1	100	73.580	Hippocampus_comes
ENSMAMG00000013219	xrn1	99	77.933	ENSIPUG00000015229	xrn1	96	77.389	Ictalurus_punctatus
ENSMAMG00000013219	xrn1	94	76.434	ENSSTOG00000013552	XRN1	99	78.323	Ictidomys_tridecemlineatus
ENSMAMG00000013219	xrn1	94	76.278	ENSJJAG00000010863	Xrn1	99	75.845	Jaculus_jaculus
ENSMAMG00000013219	xrn1	92	88.337	ENSKMAG00000021356	xrn1	95	86.170	Kryptolebias_marmoratus
ENSMAMG00000013219	xrn1	94	87.158	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSMAMG00000013219	xrn1	92	77.919	ENSLACG00000009020	XRN1	92	70.785	Latimeria_chalumnae
ENSMAMG00000013219	xrn1	92	83.369	ENSLOCG00000007944	xrn1	94	75.621	Lepisosteus_oculatus
ENSMAMG00000013219	xrn1	94	77.002	ENSLAFG00000015426	XRN1	99	73.783	Loxodonta_africana
ENSMAMG00000013219	xrn1	94	77.320	ENSMFAG00000032599	XRN1	94	70.686	Macaca_fascicularis
ENSMAMG00000013219	xrn1	94	77.113	ENSMMUG00000014038	XRN1	94	71.034	Macaca_mulatta
ENSMAMG00000013219	xrn1	94	76.543	ENSMNEG00000034217	XRN1	94	71.429	Macaca_nemestrina
ENSMAMG00000013219	xrn1	69	76.124	ENSMLEG00000041349	-	99	79.956	Mandrillus_leucophaeus
ENSMAMG00000013219	xrn1	99	87.784	ENSMZEG00005015099	xrn1	95	87.706	Maylandia_zebra
ENSMAMG00000013219	xrn1	95	72.358	ENSMGAG00000006333	XRN1	91	69.520	Meleagris_gallopavo
ENSMAMG00000013219	xrn1	94	76.907	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSMAMG00000013219	xrn1	94	76.122	ENSMOCG00000008665	Xrn1	99	78.605	Microtus_ochrogaster
ENSMAMG00000013219	xrn1	90	85.714	ENSMMOG00000020896	-	96	80.591	Mola_mola
ENSMAMG00000013219	xrn1	92	78.059	ENSMODG00000021236	XRN1	93	71.180	Monodelphis_domestica
ENSMAMG00000013219	xrn1	99	76.464	ENSMALG00000004098	xrn1	100	77.033	Monopterus_albus
ENSMAMG00000013219	xrn1	94	77.366	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSMAMG00000013219	xrn1	94	77.113	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSMAMG00000013219	xrn1	94	77.113	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSMAMG00000013219	xrn1	94	77.113	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSMAMG00000013219	xrn1	94	77.823	ENSMPUG00000012040	XRN1	94	71.293	Mustela_putorius_furo
ENSMAMG00000013219	xrn1	94	77.049	ENSMLUG00000016885	XRN1	92	70.347	Myotis_lucifugus
ENSMAMG00000013219	xrn1	94	72.614	ENSNGAG00000023964	Xrn1	99	75.120	Nannospalax_galili
ENSMAMG00000013219	xrn1	94	77.526	ENSNLEG00000004726	XRN1	94	70.955	Nomascus_leucogenys
ENSMAMG00000013219	xrn1	68	95.876	ENSMEUG00000014473	-	64	96.117	Notamacropus_eugenii
ENSMAMG00000013219	xrn1	84	69.816	ENSOPRG00000007337	-	63	68.262	Ochotona_princeps
ENSMAMG00000013219	xrn1	99	88.531	ENSONIG00000016673	xrn1	94	88.531	Oreochromis_niloticus
ENSMAMG00000013219	xrn1	85	76.644	ENSOANG00000006735	XRN1	93	67.867	Ornithorhynchus_anatinus
ENSMAMG00000013219	xrn1	94	77.160	ENSOCUG00000001861	XRN1	92	71.248	Oryctolagus_cuniculus
ENSMAMG00000013219	xrn1	99	85.156	ENSORLG00000013005	xrn1	93	85.156	Oryzias_latipes
ENSMAMG00000013219	xrn1	99	85.000	ENSORLG00020005559	xrn1	95	85.000	Oryzias_latipes_hni
ENSMAMG00000013219	xrn1	92	88.769	ENSORLG00015022523	xrn1	100	76.120	Oryzias_latipes_hsok
ENSMAMG00000013219	xrn1	92	88.136	ENSOMEG00000015397	xrn1	100	77.963	Oryzias_melastigma
ENSMAMG00000013219	xrn1	96	69.376	ENSOGAG00000000170	XRN1	93	69.140	Otolemur_garnettii
ENSMAMG00000013219	xrn1	94	76.639	ENSOARG00000006343	XRN1	94	70.662	Ovis_aries
ENSMAMG00000013219	xrn1	94	76.907	ENSPPAG00000010180	XRN1	94	70.955	Pan_paniscus
ENSMAMG00000013219	xrn1	94	77.572	ENSPPRG00000007125	XRN1	94	71.609	Panthera_pardus
ENSMAMG00000013219	xrn1	94	77.572	ENSPTIG00000021081	XRN1	94	71.609	Panthera_tigris_altaica
ENSMAMG00000013219	xrn1	94	76.907	ENSPTRG00000015482	XRN1	94	70.955	Pan_troglodytes
ENSMAMG00000013219	xrn1	94	77.113	ENSPANG00000010638	XRN1	94	71.034	Papio_anubis
ENSMAMG00000013219	xrn1	95	75.820	ENSPSIG00000018050	XRN1	92	70.399	Pelodiscus_sinensis
ENSMAMG00000013219	xrn1	92	87.339	ENSPMGG00000002648	xrn1	99	87.560	Periophthalmus_magnuspinnatus
ENSMAMG00000013219	xrn1	94	77.113	ENSPEMG00000020610	Xrn1	99	78.730	Peromyscus_maniculatus_bairdii
ENSMAMG00000013219	xrn1	94	53.945	ENSPMAG00000002975	xrn1	90	77.586	Petromyzon_marinus
ENSMAMG00000013219	xrn1	92	79.355	ENSPCIG00000028735	XRN1	99	78.537	Phascolarctos_cinereus
ENSMAMG00000013219	xrn1	92	86.402	ENSPFOG00000013932	xrn1	97	85.303	Poecilia_formosa
ENSMAMG00000013219	xrn1	92	87.526	ENSPLAG00000021653	xrn1	94	85.939	Poecilia_latipinna
ENSMAMG00000013219	xrn1	92	87.185	ENSPMEG00000003076	xrn1	89	86.107	Poecilia_mexicana
ENSMAMG00000013219	xrn1	99	85.098	ENSPREG00000021147	xrn1	95	85.333	Poecilia_reticulata
ENSMAMG00000013219	xrn1	94	77.526	ENSPPYG00000014172	XRN1	94	71.113	Pongo_abelii
ENSMAMG00000013219	xrn1	92	77.754	ENSPCAG00000005638	XRN1	88	66.288	Procavia_capensis
ENSMAMG00000013219	xrn1	94	76.495	ENSPCOG00000013089	XRN1	99	78.323	Propithecus_coquereli
ENSMAMG00000013219	xrn1	94	69.628	ENSPVAG00000016265	XRN1	78	85.549	Pteropus_vampyrus
ENSMAMG00000013219	xrn1	92	88.535	ENSPNYG00000010570	xrn1	95	87.500	Pundamilia_nyererei
ENSMAMG00000013219	xrn1	99	75.504	ENSPNAG00000023531	xrn1	95	75.504	Pygocentrus_nattereri
ENSMAMG00000013219	xrn1	94	75.670	ENSRNOG00000042951	Xrn1	92	71.327	Rattus_norvegicus
ENSMAMG00000013219	xrn1	94	77.113	ENSRBIG00000041227	XRN1	94	70.955	Rhinopithecus_bieti
ENSMAMG00000013219	xrn1	69	75.562	ENSRROG00000033764	-	100	95.146	Rhinopithecus_roxellana
ENSMAMG00000013219	xrn1	85	49.814	YGL173C	XRN1	73	52.989	Saccharomyces_cerevisiae
ENSMAMG00000013219	xrn1	94	75.460	ENSSBOG00000029561	XRN1	94	70.922	Saimiri_boliviensis_boliviensis
ENSMAMG00000013219	xrn1	92	78.361	ENSSHAG00000016207	XRN1	94	69.509	Sarcophilus_harrisii
ENSMAMG00000013219	xrn1	98	76.355	ENSSFOG00015024211	xrn1	100	67.226	Scleropages_formosus
ENSMAMG00000013219	xrn1	99	85.191	ENSSMAG00000016534	xrn1	99	85.191	Scophthalmus_maximus
ENSMAMG00000013219	xrn1	92	90.254	ENSSDUG00000010306	xrn1	100	76.801	Seriola_dumerili
ENSMAMG00000013219	xrn1	99	84.315	ENSSLDG00000021543	xrn1	100	84.315	Seriola_lalandi_dorsalis
ENSMAMG00000013219	xrn1	94	76.082	ENSSARG00000007741	-	75	67.183	Sorex_araneus
ENSMAMG00000013219	xrn1	95	75.514	ENSSPUG00000010779	-	97	75.934	Sphenodon_punctatus
ENSMAMG00000013219	xrn1	95	89.072	ENSSPAG00000009856	-	96	88.753	Stegastes_partitus
ENSMAMG00000013219	xrn1	98	72.266	ENSTGUG00000008498	XRN1	93	71.417	Taeniopygia_guttata
ENSMAMG00000013219	xrn1	92	86.882	ENSTRUG00000004895	xrn1	97	87.097	Takifugu_rubripes
ENSMAMG00000013219	xrn1	97	83.030	ENSTNIG00000017615	xrn1	95	79.660	Tetraodon_nigroviridis
ENSMAMG00000013219	xrn1	82	85.215	ENSTBEG00000003256	XRN1	77	85.039	Tupaia_belangeri
ENSMAMG00000013219	xrn1	94	74.385	ENSTTRG00000012914	XRN1	94	68.322	Tursiops_truncatus
ENSMAMG00000013219	xrn1	92	74.946	ENSUAMG00000001608	XRN1	99	73.734	Ursus_americanus
ENSMAMG00000013219	xrn1	92	78.992	ENSUMAG00000013625	XRN1	94	70.843	Ursus_maritimus
ENSMAMG00000013219	xrn1	94	76.653	ENSVPAG00000004690	XRN1	89	68.375	Vicugna_pacos
ENSMAMG00000013219	xrn1	94	78.526	ENSVVUG00000024461	XRN1	99	79.399	Vulpes_vulpes
ENSMAMG00000013219	xrn1	94	75.620	ENSXETG00000000619	xrn1	99	85.039	Xenopus_tropicalis
ENSMAMG00000013219	xrn1	92	87.152	ENSXCOG00000007917	xrn1	100	74.327	Xiphophorus_couchianus
ENSMAMG00000013219	xrn1	96	84.282	ENSXMAG00000018320	xrn1	99	84.443	Xiphophorus_maculatus