EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000015335 (Gene tree)
Gene ID: -
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin 1b
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 15685 bases
Position: chrOOHQ01000077.1:3981195-3996879
Accession: ZDB-GENE-080723-7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000022796	Nucleoplasmin	PF03066.15	1.1e-11	1	1
ENSMAMP00000022783	Nucleoplasmin	PF03066.15	1.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000023363	-	6105	-	ENSMAMP00000022783	220 (aa)	-	-
ENSMAMT00000023376	-	4864	-	ENSMAMP00000022796	219 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000015335's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000015335's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000015335	npm1b	97	42.105	ENSMAMG00000009344	npm1a	58	43.421

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000015335	npm1b	100	81.735	ENSAPOG00000004268	npm1b	72	81.735	Acanthochromis_polyacanthus
ENSMAMG00000015335	npm1b	100	80.822	ENSAOCG00000012549	npm1b	72	80.822	Amphiprion_ocellaris
ENSMAMG00000015335	npm1b	100	79.452	ENSAPEG00000000868	npm1b	71	79.452	Amphiprion_percula
ENSMAMG00000015335	npm1b	100	87.671	ENSATEG00000006254	npm1b	72	87.215	Anabas_testudineus
ENSMAMG00000015335	npm1b	97	44.395	ENSACAG00000015626	-	71	44.796	Anolis_carolinensis
ENSMAMG00000015335	npm1b	98	58.824	ENSAMXG00000042148	npm1b	71	59.729	Astyanax_mexicanus
ENSMAMG00000015335	npm1b	100	75.342	ENSCSEG00000004530	npm1b	72	74.886	Cynoglossus_semilaevis
ENSMAMG00000015335	npm1b	100	73.516	ENSCVAG00000013016	npm1b	72	73.516	Cyprinodon_variegatus
ENSMAMG00000015335	npm1b	98	61.435	ENSDARG00000037675	npm1b	71	60.811	Danio_rerio
ENSMAMG00000015335	npm1b	100	59.556	ENSELUG00000022123	npm1b	72	58.667	Esox_lucius
ENSMAMG00000015335	npm1b	97	43.182	ENSFALG00000003320	-	70	43.182	Ficedula_albicollis
ENSMAMG00000015335	npm1b	100	75.799	ENSFHEG00000020794	npm1b	72	73.973	Fundulus_heteroclitus
ENSMAMG00000015335	npm1b	97	58.411	ENSGMOG00000002689	npm1b	70	58.879	Gadus_morhua
ENSMAMG00000015335	npm1b	97	43.182	ENSGALG00000002197	-	51	43.891	Gallus_gallus
ENSMAMG00000015335	npm1b	100	73.516	ENSGAFG00000017709	npm1b	72	72.603	Gambusia_affinis
ENSMAMG00000015335	npm1b	97	78.873	ENSGACG00000016706	npm1b	70	78.873	Gasterosteus_aculeatus
ENSMAMG00000015335	npm1b	97	42.793	ENSGAGG00000020250	-	70	44.144	Gopherus_agassizii
ENSMAMG00000015335	npm1b	100	75.342	ENSHBUG00000019903	npm1b	68	78.082	Haplochromis_burtoni
ENSMAMG00000015335	npm1b	100	70.320	ENSHCOG00000003895	npm1b	72	70.320	Hippocampus_comes
ENSMAMG00000015335	npm1b	98	58.824	ENSIPUG00000020165	npm1b	75	58.824	Ictalurus_punctatus
ENSMAMG00000015335	npm1b	98	74.419	ENSKMAG00000008260	npm1b	71	77.674	Kryptolebias_marmoratus
ENSMAMG00000015335	npm1b	93	41.629	ENSLACG00000001779	-	76	39.574	Latimeria_chalumnae
ENSMAMG00000015335	npm1b	99	50.870	ENSLOCG00000001942	npm1b	77	51.739	Lepisosteus_oculatus
ENSMAMG00000015335	npm1b	97	43.182	ENSMGAG00000001591	-	75	43.172	Meleagris_gallopavo
ENSMAMG00000015335	npm1b	100	82.648	ENSMALG00000015383	npm1b	88	85.388	Monopterus_albus
ENSMAMG00000015335	npm1b	99	72.222	ENSONIG00000001397	npm1b	70	72.222	Oreochromis_niloticus
ENSMAMG00000015335	npm1b	100	63.014	ENSOMEG00000003414	npm1b	71	62.100	Oryzias_melastigma
ENSMAMG00000015335	npm1b	100	55.794	ENSPKIG00000020050	npm1b	72	55.794	Paramormyrops_kingsleyae
ENSMAMG00000015335	npm1b	98	46.256	ENSPSIG00000011204	-	68	46.667	Pelodiscus_sinensis
ENSMAMG00000015335	npm1b	100	73.973	ENSPFOG00000018357	npm1b	72	73.059	Poecilia_formosa
ENSMAMG00000015335	npm1b	98	56.818	ENSPNAG00000005498	npm1b	71	56.818	Pygocentrus_nattereri
ENSMAMG00000015335	npm1b	100	56.000	ENSSFOG00015005064	npm1b	73	56.000	Scleropages_formosus
ENSMAMG00000015335	npm1b	100	79.452	ENSSMAG00000008088	npm1b	72	78.995	Scophthalmus_maximus
ENSMAMG00000015335	npm1b	100	82.192	ENSSDUG00000007726	npm1b	72	82.192	Seriola_dumerili
ENSMAMG00000015335	npm1b	100	82.648	ENSSLDG00000021396	npm1b	72	82.648	Seriola_lalandi_dorsalis
ENSMAMG00000015335	npm1b	100	82.192	ENSSPAG00000011152	npm1b	72	82.192	Stegastes_partitus
ENSMAMG00000015335	npm1b	97	42.727	ENSTGUG00000014970	-	74	42.727	Taeniopygia_guttata
ENSMAMG00000015335	npm1b	100	71.041	ENSTRUG00000008105	npm1b	68	71.946	Takifugu_rubripes
ENSMAMG00000015335	npm1b	99	67.421	ENSTNIG00000013057	npm1b	71	66.968	Tetraodon_nigroviridis
ENSMAMG00000015335	npm1b	98	39.301	ENSXETG00000008403	npm1	71	37.931	Xenopus_tropicalis
ENSMAMG00000015335	npm1b	100	74.886	ENSXMAG00000001986	npm1b	72	73.973	Xiphophorus_maculatus