EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000016565 (Gene tree)
Gene ID: 113144262
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 20262 bases
Position: chrOOHQ01000077.1:23692016-23712277
Accession: 113144262
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000024737	RNA_pol_Rpb1_5	PF04998.17	1.9e-100	1	1
ENSMAMP00000024737	RNA_pol_Rpb1_4	PF05000.17	4.2e-21	1	1
ENSMAMP00000024737	RNA_pol_Rpb1_2	PF00623.20	1.4e-68	1	1
ENSMAMP00000024737	RNA_pol_Rpb1_3	PF04983.18	4e-37	1	1
ENSMAMP00000024737	RNA_pol_Rpb1_1	PF04997.12	3.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000025373	-	5019	XM_026330166	ENSMAMP00000024737	1672 (aa)	XP_026185951	-

Gene Model

Click here to download ENSMAMG00000016565's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000016565's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000016565	polr1a	63	32.711	ENSMAMG00000017497	polr3a	66	33.447

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000016565	polr1a	100	66.512	ENSG00000068654	POLR1A	100	66.198	Homo_sapiens
ENSMAMG00000016565	polr1a	69	87.127	ENSAPOG00000017945	polr1a	99	87.127	Acanthochromis_polyacanthus
ENSMAMG00000016565	polr1a	100	66.143	ENSAMEG00000005807	POLR1A	100	70.215	Ailuropoda_melanoleuca
ENSMAMG00000016565	polr1a	100	81.748	ENSACIG00000022147	polr1a	100	81.105	Amphilophus_citrinellus
ENSMAMG00000016565	polr1a	100	85.588	ENSAOCG00000017336	polr1a	100	87.384	Amphiprion_ocellaris
ENSMAMG00000016565	polr1a	100	85.588	ENSAPEG00000016105	polr1a	100	85.824	Amphiprion_percula
ENSMAMG00000016565	polr1a	100	88.145	ENSATEG00000016773	polr1a	100	88.145	Anabas_testudineus
ENSMAMG00000016565	polr1a	86	66.870	ENSAPLG00000013871	POLR1A	99	67.735	Anas_platyrhynchos
ENSMAMG00000016565	polr1a	99	64.854	ENSACAG00000012141	POLR1A	99	64.195	Anolis_carolinensis
ENSMAMG00000016565	polr1a	100	65.371	ENSANAG00000033927	POLR1A	100	65.796	Aotus_nancymaae
ENSMAMG00000016565	polr1a	100	80.036	ENSACLG00000020541	polr1a	100	80.036	Astatotilapia_calliptera
ENSMAMG00000016565	polr1a	100	66.145	ENSBTAG00000006481	POLR1A	100	66.841	Bos_taurus
ENSMAMG00000016565	polr1a	99	37.907	WBGene00012999	rpoa-1	77	60.870	Caenorhabditis_elegans
ENSMAMG00000016565	polr1a	100	65.507	ENSCJAG00000019547	POLR1A	100	65.295	Callithrix_jacchus
ENSMAMG00000016565	polr1a	100	65.699	ENSCAFG00000007613	POLR1A	100	66.395	Canis_familiaris
ENSMAMG00000016565	polr1a	100	66.390	ENSCAFG00020014752	POLR1A	100	66.509	Canis_lupus_dingo
ENSMAMG00000016565	polr1a	100	66.375	ENSCHIG00000018204	POLR1A	100	66.123	Capra_hircus
ENSMAMG00000016565	polr1a	100	65.389	ENSTSYG00000002761	POLR1A	100	65.852	Carlito_syrichta
ENSMAMG00000016565	polr1a	97	63.708	ENSCAPG00000010132	POLR1A	99	63.708	Cavia_aperea
ENSMAMG00000016565	polr1a	100	66.259	ENSCPOG00000012350	POLR1A	100	66.375	Cavia_porcellus
ENSMAMG00000016565	polr1a	100	65.525	ENSCCAG00000019839	POLR1A	100	66.222	Cebus_capucinus
ENSMAMG00000016565	polr1a	100	66.512	ENSCATG00000029786	POLR1A	100	65.879	Cercocebus_atys
ENSMAMG00000016565	polr1a	100	65.511	ENSCLAG00000005187	POLR1A	100	66.067	Chinchilla_lanigera
ENSMAMG00000016565	polr1a	100	66.048	ENSCSAG00000016251	POLR1A	100	65.916	Chlorocebus_sabaeus
ENSMAMG00000016565	polr1a	99	67.428	ENSCPBG00000001115	POLR1A	99	66.783	Chrysemys_picta_bellii
ENSMAMG00000016565	polr1a	92	56.164	ENSCSAVG00000007184	-	93	56.164	Ciona_savignyi
ENSMAMG00000016565	polr1a	100	63.631	ENSCANG00000031785	POLR1A	100	63.337	Colobus_angolensis_palliatus
ENSMAMG00000016565	polr1a	96	67.619	ENSCGRG00001006651	Polr1a	100	67.619	Cricetulus_griseus_chok1gshd
ENSMAMG00000016565	polr1a	60	64.334	ENSCGRG00000010834	Polr1a	100	64.626	Cricetulus_griseus_crigri
ENSMAMG00000016565	polr1a	100	77.778	ENSCSEG00000020190	polr1a	100	77.541	Cynoglossus_semilaevis
ENSMAMG00000016565	polr1a	100	80.342	ENSCVAG00000020941	polr1a	100	80.638	Cyprinodon_variegatus
ENSMAMG00000016565	polr1a	100	72.199	ENSDARG00000098375	polr1a	100	71.311	Danio_rerio
ENSMAMG00000016565	polr1a	100	63.441	ENSDNOG00000010829	POLR1A	100	63.378	Dasypus_novemcinctus
ENSMAMG00000016565	polr1a	100	65.238	ENSDORG00000008298	Polr1a	100	65.069	Dipodomys_ordii
ENSMAMG00000016565	polr1a	78	44.825	FBgn0019938	RpI1	99	42.840	Drosophila_melanogaster
ENSMAMG00000016565	polr1a	72	81.250	ENSETEG00000000412	-	71	81.250	Echinops_telfairi
ENSMAMG00000016565	polr1a	89	47.669	ENSEBUG00000005667	-	99	47.536	Eptatretus_burgeri
ENSMAMG00000016565	polr1a	100	65.972	ENSEASG00005001625	POLR1A	100	67.053	Equus_asinus_asinus
ENSMAMG00000016565	polr1a	100	65.972	ENSECAG00000030510	-	99	71.102	Equus_caballus
ENSMAMG00000016565	polr1a	100	65.972	ENSECAG00000010092	POLR1A	99	71.102	Equus_caballus
ENSMAMG00000016565	polr1a	100	65.972	ENSECAG00000036306	-	99	71.102	Equus_caballus
ENSMAMG00000016565	polr1a	85	77.899	ENSEEUG00000000676	POLR1A	84	77.899	Erinaceus_europaeus
ENSMAMG00000016565	polr1a	100	73.783	ENSELUG00000012769	polr1a	99	74.150	Esox_lucius
ENSMAMG00000016565	polr1a	100	66.222	ENSFCAG00000008966	POLR1A	100	66.996	Felis_catus
ENSMAMG00000016565	polr1a	99	65.097	ENSFALG00000010082	POLR1A	99	64.971	Ficedula_albicollis
ENSMAMG00000016565	polr1a	100	65.529	ENSFDAG00000013726	POLR1A	100	66.123	Fukomys_damarensis
ENSMAMG00000016565	polr1a	100	77.394	ENSFHEG00000005996	polr1a	100	77.092	Fundulus_heteroclitus
ENSMAMG00000016565	polr1a	100	69.355	ENSGMOG00000002230	polr1a	100	69.011	Gadus_morhua
ENSMAMG00000016565	polr1a	89	64.388	ENSGALG00000038160	-	98	64.491	Gallus_gallus
ENSMAMG00000016565	polr1a	100	80.107	ENSGAFG00000015266	polr1a	100	79.633	Gambusia_affinis
ENSMAMG00000016565	polr1a	100	81.032	ENSGACG00000018791	polr1a	100	81.265	Gasterosteus_aculeatus
ENSMAMG00000016565	polr1a	89	69.226	ENSGAGG00000004984	-	95	73.454	Gopherus_agassizii
ENSMAMG00000016565	polr1a	100	66.338	ENSGGOG00000001788	POLR1A	100	65.706	Gorilla_gorilla
ENSMAMG00000016565	polr1a	90	81.206	ENSHBUG00000020021	polr1a	98	81.509	Haplochromis_burtoni
ENSMAMG00000016565	polr1a	100	66.531	ENSHGLG00000006334	POLR1A	100	66.589	Heterocephalus_glaber_female
ENSMAMG00000016565	polr1a	100	66.338	ENSHGLG00100006614	POLR1A	100	66.396	Heterocephalus_glaber_male
ENSMAMG00000016565	polr1a	100	77.831	ENSHCOG00000003345	polr1a	100	77.712	Hippocampus_comes
ENSMAMG00000016565	polr1a	100	72.392	ENSIPUG00000013174	polr1a	100	71.948	Ictalurus_punctatus
ENSMAMG00000016565	polr1a	100	65.636	ENSSTOG00000012580	POLR1A	100	64.791	Ictidomys_tridecemlineatus
ENSMAMG00000016565	polr1a	100	66.376	ENSJJAG00000013113	Polr1a	100	66.318	Jaculus_jaculus
ENSMAMG00000016565	polr1a	100	84.866	ENSKMAG00000007399	polr1a	100	84.866	Kryptolebias_marmoratus
ENSMAMG00000016565	polr1a	100	80.735	ENSLBEG00000015401	polr1a	100	80.142	Labrus_bergylta
ENSMAMG00000016565	polr1a	53	70.588	ENSLACG00000003218	polr1a	100	70.588	Latimeria_chalumnae
ENSMAMG00000016565	polr1a	100	70.581	ENSLOCG00000010881	polr1a	100	70.780	Lepisosteus_oculatus
ENSMAMG00000016565	polr1a	100	66.492	ENSLAFG00000014948	POLR1A	100	66.647	Loxodonta_africana
ENSMAMG00000016565	polr1a	100	66.106	ENSMFAG00000046097	POLR1A	100	65.879	Macaca_fascicularis
ENSMAMG00000016565	polr1a	100	65.990	ENSMMUG00000015815	POLR1A	100	65.764	Macaca_mulatta
ENSMAMG00000016565	polr1a	100	66.106	ENSMNEG00000043313	POLR1A	100	65.879	Macaca_nemestrina
ENSMAMG00000016565	polr1a	100	65.757	ENSMLEG00000042428	POLR1A	100	65.511	Mandrillus_leucophaeus
ENSMAMG00000016565	polr1a	100	85.892	ENSMZEG00005004915	polr1a	100	85.892	Maylandia_zebra
ENSMAMG00000016565	polr1a	99	63.415	ENSMGAG00000013111	POLR1A	99	63.462	Meleagris_gallopavo
ENSMAMG00000016565	polr1a	91	65.926	ENSMAUG00000008497	Polr1a	100	65.906	Mesocricetus_auratus
ENSMAMG00000016565	polr1a	100	65.913	ENSMICG00000000757	POLR1A	100	65.531	Microcebus_murinus
ENSMAMG00000016565	polr1a	100	66.202	ENSMOCG00000000122	Polr1a	100	65.799	Microtus_ochrogaster
ENSMAMG00000016565	polr1a	100	82.028	ENSMMOG00000010216	polr1a	100	82.088	Mola_mola
ENSMAMG00000016565	polr1a	100	62.400	ENSMODG00000009335	POLR1A	100	61.859	Monodelphis_domestica
ENSMAMG00000016565	polr1a	100	86.706	ENSMALG00000013363	polr1a	100	87.122	Monopterus_albus
ENSMAMG00000016565	polr1a	100	65.505	MGP_CAROLIEiJ_G0028494	Polr1a	100	64.893	Mus_caroli
ENSMAMG00000016565	polr1a	100	65.124	ENSMUSG00000049553	Polr1a	100	65.124	Mus_musculus
ENSMAMG00000016565	polr1a	100	65.970	MGP_PahariEiJ_G0022230	Polr1a	100	65.278	Mus_pahari
ENSMAMG00000016565	polr1a	100	64.709	MGP_SPRETEiJ_G0029499	Polr1a	100	64.786	Mus_spretus
ENSMAMG00000016565	polr1a	100	66.164	ENSMPUG00000009135	POLR1A	100	66.241	Mustela_putorius_furo
ENSMAMG00000016565	polr1a	100	65.440	ENSMLUG00000015723	POLR1A	100	66.263	Myotis_lucifugus
ENSMAMG00000016565	polr1a	100	65.990	ENSNGAG00000017907	Polr1a	100	65.587	Nannospalax_galili
ENSMAMG00000016565	polr1a	100	85.833	ENSNBRG00000000519	polr1a	100	85.833	Neolamprologus_brichardi
ENSMAMG00000016565	polr1a	100	64.702	ENSNLEG00000002264	POLR1A	100	65.107	Nomascus_leucogenys
ENSMAMG00000016565	polr1a	75	85.039	ENSMEUG00000011665	-	75	85.039	Notamacropus_eugenii
ENSMAMG00000016565	polr1a	99	60.483	ENSOPRG00000008269	POLR1A	100	60.329	Ochotona_princeps
ENSMAMG00000016565	polr1a	100	65.852	ENSODEG00000003542	POLR1A	100	66.318	Octodon_degus
ENSMAMG00000016565	polr1a	100	85.580	ENSONIG00000015895	polr1a	100	85.580	Oreochromis_niloticus
ENSMAMG00000016565	polr1a	100	65.469	ENSOCUG00000010138	POLR1A	100	65.756	Oryctolagus_cuniculus
ENSMAMG00000016565	polr1a	100	81.598	ENSORLG00000008753	polr1a	99	81.598	Oryzias_latipes
ENSMAMG00000016565	polr1a	100	78.835	ENSORLG00020020726	polr1a	99	78.597	Oryzias_latipes_hni
ENSMAMG00000016565	polr1a	95	85.106	ENSORLG00015016071	polr1a	98	85.106	Oryzias_latipes_hsok
ENSMAMG00000016565	polr1a	100	65.681	ENSOGAG00000004031	POLR1A	100	65.932	Otolemur_garnettii
ENSMAMG00000016565	polr1a	100	66.532	ENSOARG00000020601	POLR1A	100	65.918	Ovis_aries
ENSMAMG00000016565	polr1a	100	66.164	ENSPPAG00000042450	POLR1A	100	65.533	Pan_paniscus
ENSMAMG00000016565	polr1a	100	66.531	ENSPPRG00000006702	POLR1A	100	67.054	Panthera_pardus
ENSMAMG00000016565	polr1a	100	66.010	ENSPTIG00000018783	POLR1A	100	66.532	Panthera_tigris_altaica
ENSMAMG00000016565	polr1a	100	65.873	ENSPTRG00000012147	POLR1A	100	65.476	Pan_troglodytes
ENSMAMG00000016565	polr1a	100	66.338	ENSPANG00000025908	POLR1A	100	65.706	Papio_anubis
ENSMAMG00000016565	polr1a	100	71.723	ENSPKIG00000005468	polr1a	98	74.056	Paramormyrops_kingsleyae
ENSMAMG00000016565	polr1a	63	65.704	ENSPSIG00000009321	-	99	65.144	Pelodiscus_sinensis
ENSMAMG00000016565	polr1a	55	82.571	ENSPMGG00000009718	polr1a	95	82.571	Periophthalmus_magnuspinnatus
ENSMAMG00000016565	polr1a	100	65.815	ENSPEMG00000022224	Polr1a	100	65.913	Peromyscus_maniculatus_bairdii
ENSMAMG00000016565	polr1a	95	65.217	ENSPCIG00000004222	POLR1A	99	64.530	Phascolarctos_cinereus
ENSMAMG00000016565	polr1a	100	81.438	ENSPFOG00000005025	polr1a	100	81.909	Poecilia_formosa
ENSMAMG00000016565	polr1a	100	81.818	ENSPLAG00000021389	polr1a	100	82.017	Poecilia_latipinna
ENSMAMG00000016565	polr1a	100	79.314	ENSPMEG00000006463	polr1a	100	79.858	Poecilia_mexicana
ENSMAMG00000016565	polr1a	100	81.331	ENSPREG00000002389	polr1a	100	81.625	Poecilia_reticulata
ENSMAMG00000016565	polr1a	100	66.048	ENSPPYG00000012217	POLR1A	100	66.454	Pongo_abelii
ENSMAMG00000016565	polr1a	91	67.652	ENSPCAG00000011582	POLR1A	91	67.652	Procavia_capensis
ENSMAMG00000016565	polr1a	100	65.855	ENSPCOG00000026987	POLR1A	100	65.531	Propithecus_coquereli
ENSMAMG00000016565	polr1a	95	65.469	ENSPVAG00000012674	POLR1A	95	65.055	Pteropus_vampyrus
ENSMAMG00000016565	polr1a	100	85.833	ENSPNYG00000000026	polr1a	100	85.833	Pundamilia_nyererei
ENSMAMG00000016565	polr1a	100	72.349	ENSPNAG00000019223	polr1a	100	71.537	Pygocentrus_nattereri
ENSMAMG00000016565	polr1a	100	66.010	ENSRNOG00000009545	Polr1a	100	65.876	Rattus_norvegicus
ENSMAMG00000016565	polr1a	100	65.815	ENSRBIG00000028335	POLR1A	100	65.742	Rhinopithecus_bieti
ENSMAMG00000016565	polr1a	100	65.815	ENSRROG00000031473	POLR1A	100	65.742	Rhinopithecus_roxellana
ENSMAMG00000016565	polr1a	99	36.707	YOR341W	RPA190	99	36.731	Saccharomyces_cerevisiae
ENSMAMG00000016565	polr1a	100	65.623	ENSSBOG00000030262	POLR1A	100	65.527	Saimiri_boliviensis_boliviensis
ENSMAMG00000016565	polr1a	100	60.599	ENSSHAG00000014739	POLR1A	100	60.436	Sarcophilus_harrisii
ENSMAMG00000016565	polr1a	100	70.178	ENSSFOG00015019716	polr1a	100	70.355	Scleropages_formosus
ENSMAMG00000016565	polr1a	100	85.757	ENSSMAG00000014342	polr1a	100	85.757	Scophthalmus_maximus
ENSMAMG00000016565	polr1a	100	89.184	ENSSDUG00000014631	polr1a	100	89.480	Seriola_dumerili
ENSMAMG00000016565	polr1a	100	85.782	ENSSLDG00000024095	polr1a	100	85.782	Seriola_lalandi_dorsalis
ENSMAMG00000016565	polr1a	68	97.561	ENSSARG00000003136	-	71	97.561	Sorex_araneus
ENSMAMG00000016565	polr1a	100	64.930	ENSSPUG00000004215	POLR1A	98	70.500	Sphenodon_punctatus
ENSMAMG00000016565	polr1a	65	87.159	ENSSPAG00000016341	polr1a	95	87.159	Stegastes_partitus
ENSMAMG00000016565	polr1a	83	67.715	ENSSSCG00000008226	POLR1A	99	67.624	Sus_scrofa
ENSMAMG00000016565	polr1a	99	64.751	ENSTGUG00000010704	POLR1A	100	64.751	Taeniopygia_guttata
ENSMAMG00000016565	polr1a	100	80.000	ENSTRUG00000002210	polr1a	99	80.000	Takifugu_rubripes
ENSMAMG00000016565	polr1a	100	73.819	ENSTNIG00000010116	polr1a	100	73.819	Tetraodon_nigroviridis
ENSMAMG00000016565	polr1a	73	84.513	ENSTBEG00000008646	POLR1A	74	84.513	Tupaia_belangeri
ENSMAMG00000016565	polr1a	100	63.937	ENSTTRG00000008597	POLR1A	100	64.286	Tursiops_truncatus
ENSMAMG00000016565	polr1a	69	67.231	ENSUAMG00000012158	-	94	67.316	Ursus_americanus
ENSMAMG00000016565	polr1a	100	66.588	ENSUMAG00000006700	POLR1A	97	70.406	Ursus_maritimus
ENSMAMG00000016565	polr1a	100	65.641	ENSVVUG00000001245	POLR1A	100	66.512	Vulpes_vulpes
ENSMAMG00000016565	polr1a	100	62.265	ENSXETG00000001952	polr1a	99	64.186	Xenopus_tropicalis
ENSMAMG00000016565	polr1a	100	81.700	ENSXMAG00000004032	polr1a	100	81.261	Xiphophorus_maculatus