EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000018233 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 22048 bases
Position: chrOOHQ01000028.1:15470985-15493032
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000027128	SMN	PF06003.12	2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000027832	-	801	-	ENSMAMP00000027128	245 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000018233's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000018233's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000018233	smndc1	87	73.709	ENSG00000119953	SMNDC1	89	73.709	Homo_sapiens
ENSMAMG00000018233	smndc1	87	91.549	ENSAPOG00000021772	smndc1	89	91.549	Acanthochromis_polyacanthus
ENSMAMG00000018233	smndc1	87	73.239	ENSAMEG00000005251	SMNDC1	89	73.239	Ailuropoda_melanoleuca
ENSMAMG00000018233	smndc1	87	90.141	ENSACIG00000004819	smndc1	89	90.141	Amphilophus_citrinellus
ENSMAMG00000018233	smndc1	87	90.141	ENSAOCG00000017869	smndc1	89	90.141	Amphiprion_ocellaris
ENSMAMG00000018233	smndc1	87	90.141	ENSAPEG00000007752	smndc1	89	90.141	Amphiprion_percula
ENSMAMG00000018233	smndc1	87	89.202	ENSATEG00000006830	smndc1	89	89.202	Anabas_testudineus
ENSMAMG00000018233	smndc1	71	71.676	ENSAPLG00000004322	SMNDC1	87	71.676	Anas_platyrhynchos
ENSMAMG00000018233	smndc1	87	73.709	ENSACAG00000005983	SMNDC1	89	73.709	Anolis_carolinensis
ENSMAMG00000018233	smndc1	87	73.239	ENSANAG00000032875	SMNDC1	89	73.239	Aotus_nancymaae
ENSMAMG00000018233	smndc1	88	87.500	ENSACLG00000016360	smndc1	98	87.500	Astatotilapia_calliptera
ENSMAMG00000018233	smndc1	87	76.995	ENSAMXG00000020310	smndc1	89	76.995	Astyanax_mexicanus
ENSMAMG00000018233	smndc1	87	73.239	ENSBTAG00000000551	SMNDC1	89	73.239	Bos_taurus
ENSMAMG00000018233	smndc1	87	73.239	ENSCJAG00000018624	SMNDC1	89	73.239	Callithrix_jacchus
ENSMAMG00000018233	smndc1	87	73.239	ENSCAFG00000010720	SMNDC1	89	73.239	Canis_familiaris
ENSMAMG00000018233	smndc1	87	73.239	ENSCAFG00020011913	SMNDC1	89	73.239	Canis_lupus_dingo
ENSMAMG00000018233	smndc1	87	73.239	ENSCHIG00000010604	SMNDC1	89	73.239	Capra_hircus
ENSMAMG00000018233	smndc1	87	73.239	ENSTSYG00000026454	SMNDC1	89	73.239	Carlito_syrichta
ENSMAMG00000018233	smndc1	82	74.129	ENSCAPG00000009132	SMNDC1	100	74.129	Cavia_aperea
ENSMAMG00000018233	smndc1	87	73.239	ENSCPOG00000031666	SMNDC1	89	73.239	Cavia_porcellus
ENSMAMG00000018233	smndc1	87	73.239	ENSCCAG00000021793	SMNDC1	89	73.239	Cebus_capucinus
ENSMAMG00000018233	smndc1	87	73.239	ENSCATG00000035910	SMNDC1	89	73.239	Cercocebus_atys
ENSMAMG00000018233	smndc1	87	73.239	ENSCLAG00000002838	SMNDC1	89	73.239	Chinchilla_lanigera
ENSMAMG00000018233	smndc1	87	73.239	ENSCSAG00000005169	SMNDC1	89	73.239	Chlorocebus_sabaeus
ENSMAMG00000018233	smndc1	79	73.575	ENSCHOG00000002936	SMNDC1	100	73.575	Choloepus_hoffmanni
ENSMAMG00000018233	smndc1	87	73.709	ENSCPBG00000012837	SMNDC1	89	73.709	Chrysemys_picta_bellii
ENSMAMG00000018233	smndc1	98	62.500	ENSCANG00000034620	-	99	62.500	Colobus_angolensis_palliatus
ENSMAMG00000018233	smndc1	87	59.624	ENSCANG00000036994	-	93	59.624	Colobus_angolensis_palliatus
ENSMAMG00000018233	smndc1	87	73.239	ENSCANG00000031720	-	89	73.239	Colobus_angolensis_palliatus
ENSMAMG00000018233	smndc1	87	72.770	ENSCGRG00001012973	Smndc1	89	72.770	Cricetulus_griseus_chok1gshd
ENSMAMG00000018233	smndc1	87	72.770	ENSCGRG00000012396	Smndc1	89	72.770	Cricetulus_griseus_crigri
ENSMAMG00000018233	smndc1	87	82.547	ENSCSEG00000015621	smndc1	95	82.547	Cynoglossus_semilaevis
ENSMAMG00000018233	smndc1	87	85.915	ENSCVAG00000020432	smndc1	89	85.915	Cyprinodon_variegatus
ENSMAMG00000018233	smndc1	87	79.439	ENSDARG00000056235	smndc1	89	79.439	Danio_rerio
ENSMAMG00000018233	smndc1	87	73.239	ENSDNOG00000016387	SMNDC1	74	73.239	Dasypus_novemcinctus
ENSMAMG00000018233	smndc1	87	73.239	ENSDORG00000023715	Smndc1	89	73.239	Dipodomys_ordii
ENSMAMG00000018233	smndc1	85	39.224	FBgn0039977	CG17454	91	40.948	Drosophila_melanogaster
ENSMAMG00000018233	smndc1	87	62.963	ENSEBUG00000010929	smndc1	90	64.352	Eptatretus_burgeri
ENSMAMG00000018233	smndc1	87	73.239	ENSEASG00005014930	SMNDC1	89	73.239	Equus_asinus_asinus
ENSMAMG00000018233	smndc1	87	73.239	ENSECAG00000029973	SMNDC1	89	73.239	Equus_caballus
ENSMAMG00000018233	smndc1	71	46.243	ENSEEUG00000013407	-	87	46.243	Erinaceus_europaeus
ENSMAMG00000018233	smndc1	87	83.099	ENSELUG00000000227	smndc1	89	83.099	Esox_lucius
ENSMAMG00000018233	smndc1	87	73.239	ENSFCAG00000027353	SMNDC1	89	73.239	Felis_catus
ENSMAMG00000018233	smndc1	87	73.239	ENSFALG00000002306	SMNDC1	89	73.239	Ficedula_albicollis
ENSMAMG00000018233	smndc1	87	73.709	ENSFDAG00000006468	SMNDC1	89	73.709	Fukomys_damarensis
ENSMAMG00000018233	smndc1	87	87.793	ENSFHEG00000020150	smndc1	89	87.793	Fundulus_heteroclitus
ENSMAMG00000018233	smndc1	98	76.987	ENSGMOG00000016585	smndc1	99	76.987	Gadus_morhua
ENSMAMG00000018233	smndc1	87	73.239	ENSGALG00000008561	SMNDC1	89	73.239	Gallus_gallus
ENSMAMG00000018233	smndc1	87	85.446	ENSGAFG00000011582	smndc1	89	85.446	Gambusia_affinis
ENSMAMG00000018233	smndc1	87	86.854	ENSGACG00000009468	smndc1	89	86.854	Gasterosteus_aculeatus
ENSMAMG00000018233	smndc1	87	73.709	ENSGAGG00000024547	SMNDC1	89	73.709	Gopherus_agassizii
ENSMAMG00000018233	smndc1	87	73.239	ENSGGOG00000010071	SMNDC1	89	73.239	Gorilla_gorilla
ENSMAMG00000018233	smndc1	87	88.263	ENSHBUG00000017596	smndc1	89	88.263	Haplochromis_burtoni
ENSMAMG00000018233	smndc1	87	50.000	ENSHGLG00000001157	-	88	50.000	Heterocephalus_glaber_female
ENSMAMG00000018233	smndc1	87	73.709	ENSHGLG00000013390	-	89	73.709	Heterocephalus_glaber_female
ENSMAMG00000018233	smndc1	87	73.709	ENSHGLG00100004814	-	89	73.709	Heterocephalus_glaber_male
ENSMAMG00000018233	smndc1	87	56.364	ENSHGLG00100004278	-	89	55.357	Heterocephalus_glaber_male
ENSMAMG00000018233	smndc1	87	80.841	ENSHCOG00000000783	smndc1	90	80.841	Hippocampus_comes
ENSMAMG00000018233	smndc1	87	80.751	ENSIPUG00000004217	smndc1	89	80.751	Ictalurus_punctatus
ENSMAMG00000018233	smndc1	87	73.239	ENSSTOG00000006088	SMNDC1	89	73.239	Ictidomys_tridecemlineatus
ENSMAMG00000018233	smndc1	87	73.239	ENSJJAG00000019974	Smndc1	89	73.239	Jaculus_jaculus
ENSMAMG00000018233	smndc1	87	85.915	ENSKMAG00000020134	smndc1	89	85.915	Kryptolebias_marmoratus
ENSMAMG00000018233	smndc1	87	85.915	ENSLBEG00000004598	smndc1	89	85.915	Labrus_bergylta
ENSMAMG00000018233	smndc1	87	72.300	ENSLACG00000007784	SMNDC1	89	72.300	Latimeria_chalumnae
ENSMAMG00000018233	smndc1	87	80.751	ENSLOCG00000012355	smndc1	89	80.751	Lepisosteus_oculatus
ENSMAMG00000018233	smndc1	87	72.770	ENSLAFG00000014353	SMNDC1	89	72.770	Loxodonta_africana
ENSMAMG00000018233	smndc1	87	59.624	ENSMFAG00000038381	-	88	59.624	Macaca_fascicularis
ENSMAMG00000018233	smndc1	87	73.239	ENSMFAG00000002433	-	89	73.239	Macaca_fascicularis
ENSMAMG00000018233	smndc1	87	59.624	ENSMMUG00000045875	-	88	59.624	Macaca_mulatta
ENSMAMG00000018233	smndc1	87	73.239	ENSMMUG00000007775	SMNDC1	89	73.239	Macaca_mulatta
ENSMAMG00000018233	smndc1	87	73.239	ENSMNEG00000042963	-	89	73.239	Macaca_nemestrina
ENSMAMG00000018233	smndc1	87	63.380	ENSMNEG00000033853	-	89	63.380	Macaca_nemestrina
ENSMAMG00000018233	smndc1	87	68.224	ENSMLEG00000040236	SMNDC1	89	67.757	Mandrillus_leucophaeus
ENSMAMG00000018233	smndc1	87	88.263	ENSMZEG00005027510	smndc1	89	88.263	Maylandia_zebra
ENSMAMG00000018233	smndc1	86	63.679	ENSMGAG00000010777	SMNDC1	89	63.679	Meleagris_gallopavo
ENSMAMG00000018233	smndc1	87	60.094	ENSMAUG00000005459	-	83	60.094	Mesocricetus_auratus
ENSMAMG00000018233	smndc1	87	73.239	ENSMAUG00000012243	-	89	73.239	Mesocricetus_auratus
ENSMAMG00000018233	smndc1	88	63.256	ENSMICG00000031640	-	90	63.256	Microcebus_murinus
ENSMAMG00000018233	smndc1	87	72.770	ENSMICG00000027336	-	89	72.770	Microcebus_murinus
ENSMAMG00000018233	smndc1	87	72.770	ENSMOCG00000002458	Smndc1	89	72.770	Microtus_ochrogaster
ENSMAMG00000018233	smndc1	87	88.263	ENSMMOG00000008856	smndc1	89	88.263	Mola_mola
ENSMAMG00000018233	smndc1	87	73.709	ENSMODG00000010542	SMNDC1	89	73.709	Monodelphis_domestica
ENSMAMG00000018233	smndc1	87	88.732	ENSMALG00000017598	smndc1	89	88.732	Monopterus_albus
ENSMAMG00000018233	smndc1	87	73.239	MGP_CAROLIEiJ_G0023072	Smndc1	89	73.239	Mus_caroli
ENSMAMG00000018233	smndc1	87	73.239	ENSMUSG00000025024	Smndc1	89	73.239	Mus_musculus
ENSMAMG00000018233	smndc1	87	73.239	MGP_PahariEiJ_G0014560	Smndc1	89	73.239	Mus_pahari
ENSMAMG00000018233	smndc1	87	73.239	MGP_SPRETEiJ_G0023993	Smndc1	89	73.239	Mus_spretus
ENSMAMG00000018233	smndc1	87	73.239	ENSMPUG00000002089	SMNDC1	89	73.239	Mustela_putorius_furo
ENSMAMG00000018233	smndc1	87	73.239	ENSMLUG00000016007	SMNDC1	89	73.239	Myotis_lucifugus
ENSMAMG00000018233	smndc1	87	72.770	ENSNGAG00000006833	Smndc1	89	72.770	Nannospalax_galili
ENSMAMG00000018233	smndc1	87	88.263	ENSNBRG00000017089	smndc1	89	88.263	Neolamprologus_brichardi
ENSMAMG00000018233	smndc1	87	73.239	ENSNLEG00000015471	SMNDC1	89	73.239	Nomascus_leucogenys
ENSMAMG00000018233	smndc1	59	52.414	ENSMEUG00000010120	-	86	48.864	Notamacropus_eugenii
ENSMAMG00000018233	smndc1	87	73.239	ENSOPRG00000015348	SMNDC1	89	73.239	Ochotona_princeps
ENSMAMG00000018233	smndc1	86	50.476	ENSODEG00000007594	-	84	48.558	Octodon_degus
ENSMAMG00000018233	smndc1	87	88.263	ENSONIG00000000434	smndc1	89	88.263	Oreochromis_niloticus
ENSMAMG00000018233	smndc1	87	74.178	ENSOANG00000001598	SMNDC1	89	74.178	Ornithorhynchus_anatinus
ENSMAMG00000018233	smndc1	87	52.582	ENSOCUG00000012274	-	89	54.460	Oryctolagus_cuniculus
ENSMAMG00000018233	smndc1	87	73.239	ENSOCUG00000008145	-	89	73.239	Oryctolagus_cuniculus
ENSMAMG00000018233	smndc1	87	80.751	ENSORLG00000005934	smndc1	85	80.751	Oryzias_latipes
ENSMAMG00000018233	smndc1	87	80.751	ENSORLG00020008796	smndc1	85	80.751	Oryzias_latipes_hni
ENSMAMG00000018233	smndc1	87	80.282	ENSORLG00015013666	smndc1	89	80.282	Oryzias_latipes_hsok
ENSMAMG00000018233	smndc1	87	78.404	ENSOMEG00000007590	smndc1	89	78.404	Oryzias_melastigma
ENSMAMG00000018233	smndc1	87	73.239	ENSOGAG00000000571	SMNDC1	89	73.239	Otolemur_garnettii
ENSMAMG00000018233	smndc1	87	73.239	ENSOARG00000009500	SMNDC1	89	73.239	Ovis_aries
ENSMAMG00000018233	smndc1	87	73.239	ENSPPAG00000027815	SMNDC1	89	73.239	Pan_paniscus
ENSMAMG00000018233	smndc1	87	73.239	ENSPPRG00000013749	SMNDC1	89	73.239	Panthera_pardus
ENSMAMG00000018233	smndc1	87	73.239	ENSPTIG00000011451	SMNDC1	89	73.239	Panthera_tigris_altaica
ENSMAMG00000018233	smndc1	87	73.239	ENSPTRG00000002937	SMNDC1	89	73.239	Pan_troglodytes
ENSMAMG00000018233	smndc1	87	68.075	ENSPANG00000031346	-	89	68.075	Papio_anubis
ENSMAMG00000018233	smndc1	87	73.239	ENSPANG00000020805	-	89	73.239	Papio_anubis
ENSMAMG00000018233	smndc1	87	76.995	ENSPKIG00000017164	smndc1	89	76.995	Paramormyrops_kingsleyae
ENSMAMG00000018233	smndc1	87	74.178	ENSPSIG00000012257	SMNDC1	89	74.178	Pelodiscus_sinensis
ENSMAMG00000018233	smndc1	87	79.343	ENSPMGG00000015651	smndc1	89	79.343	Periophthalmus_magnuspinnatus
ENSMAMG00000018233	smndc1	87	73.239	ENSPEMG00000022058	Smndc1	89	73.239	Peromyscus_maniculatus_bairdii
ENSMAMG00000018233	smndc1	87	60.731	ENSPMAG00000007705	smndc1	90	60.731	Petromyzon_marinus
ENSMAMG00000018233	smndc1	87	73.709	ENSPCIG00000018419	SMNDC1	89	73.709	Phascolarctos_cinereus
ENSMAMG00000018233	smndc1	82	54.229	ENSPCIG00000009693	-	86	54.229	Phascolarctos_cinereus
ENSMAMG00000018233	smndc1	87	86.854	ENSPFOG00000017113	smndc1	89	86.854	Poecilia_formosa
ENSMAMG00000018233	smndc1	87	85.915	ENSPLAG00000010372	smndc1	89	85.915	Poecilia_latipinna
ENSMAMG00000018233	smndc1	87	86.385	ENSPMEG00000012288	smndc1	89	86.385	Poecilia_mexicana
ENSMAMG00000018233	smndc1	87	84.507	ENSPREG00000012279	smndc1	89	84.507	Poecilia_reticulata
ENSMAMG00000018233	smndc1	87	73.239	ENSPPYG00000002643	SMNDC1	89	73.239	Pongo_abelii
ENSMAMG00000018233	smndc1	79	72.539	ENSPCAG00000016183	SMNDC1	100	72.539	Procavia_capensis
ENSMAMG00000018233	smndc1	87	72.770	ENSPCOG00000024343	SMNDC1	89	72.770	Propithecus_coquereli
ENSMAMG00000018233	smndc1	87	54.930	ENSPVAG00000004368	SMNDC1	89	54.930	Pteropus_vampyrus
ENSMAMG00000018233	smndc1	71	86.705	ENSPNYG00000024093	smndc1	76	86.705	Pundamilia_nyererei
ENSMAMG00000018233	smndc1	87	76.995	ENSPNAG00000025285	smndc1	89	76.995	Pygocentrus_nattereri
ENSMAMG00000018233	smndc1	87	73.239	ENSRNOG00000014833	Smndc1	89	73.239	Rattus_norvegicus
ENSMAMG00000018233	smndc1	87	72.770	ENSRBIG00000000224	-	89	72.770	Rhinopithecus_bieti
ENSMAMG00000018233	smndc1	87	62.911	ENSRBIG00000032452	-	94	62.911	Rhinopithecus_bieti
ENSMAMG00000018233	smndc1	87	73.239	ENSRROG00000044992	-	89	73.239	Rhinopithecus_roxellana
ENSMAMG00000018233	smndc1	87	63.380	ENSRROG00000039125	-	94	63.380	Rhinopithecus_roxellana
ENSMAMG00000018233	smndc1	87	73.239	ENSSBOG00000026789	SMNDC1	89	73.239	Saimiri_boliviensis_boliviensis
ENSMAMG00000018233	smndc1	87	73.709	ENSSHAG00000015189	SMNDC1	89	73.709	Sarcophilus_harrisii
ENSMAMG00000018233	smndc1	87	77.465	ENSSFOG00015008311	smndc1	89	77.465	Scleropages_formosus
ENSMAMG00000018233	smndc1	99	83.128	ENSSMAG00000020118	smndc1	95	83.128	Scophthalmus_maximus
ENSMAMG00000018233	smndc1	87	92.019	ENSSDUG00000015330	smndc1	89	92.019	Seriola_dumerili
ENSMAMG00000018233	smndc1	87	91.549	ENSSLDG00000017325	smndc1	89	91.549	Seriola_lalandi_dorsalis
ENSMAMG00000018233	smndc1	87	73.239	ENSSARG00000006063	SMNDC1	89	73.239	Sorex_araneus
ENSMAMG00000018233	smndc1	87	73.709	ENSSPUG00000004574	SMNDC1	89	73.709	Sphenodon_punctatus
ENSMAMG00000018233	smndc1	87	89.202	ENSSPAG00000000338	smndc1	89	89.202	Stegastes_partitus
ENSMAMG00000018233	smndc1	87	73.239	ENSSSCG00000030507	SMNDC1	89	73.239	Sus_scrofa
ENSMAMG00000018233	smndc1	87	73.239	ENSTGUG00000010599	SMNDC1	89	73.239	Taeniopygia_guttata
ENSMAMG00000018233	smndc1	87	81.690	ENSTRUG00000023281	smndc1	89	81.690	Takifugu_rubripes
ENSMAMG00000018233	smndc1	87	81.690	ENSTNIG00000013331	smndc1	89	81.690	Tetraodon_nigroviridis
ENSMAMG00000018233	smndc1	87	73.239	ENSTBEG00000014337	SMNDC1	89	73.239	Tupaia_belangeri
ENSMAMG00000018233	smndc1	87	73.239	ENSUAMG00000008142	SMNDC1	89	73.239	Ursus_americanus
ENSMAMG00000018233	smndc1	87	73.239	ENSUMAG00000023722	SMNDC1	89	73.239	Ursus_maritimus
ENSMAMG00000018233	smndc1	71	71.098	ENSVPAG00000003402	SMNDC1	87	71.098	Vicugna_pacos
ENSMAMG00000018233	smndc1	87	73.239	ENSVVUG00000007820	SMNDC1	89	73.239	Vulpes_vulpes
ENSMAMG00000018233	smndc1	58	64.789	ENSXETG00000015415	SMNDC1	100	64.789	Xenopus_tropicalis
ENSMAMG00000018233	smndc1	87	85.915	ENSXCOG00000009159	smndc1	89	85.915	Xiphophorus_couchianus
ENSMAMG00000018233	smndc1	87	86.854	ENSXMAG00000012755	smndc1	89	86.854	Xiphophorus_maculatus