EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000018364 (Gene tree)
Gene ID: 113123568
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 3609 bases
Position: chrOOHQ01000093.1:19328974-19332582
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000027385	Smg4_UPF3	PF03467.15	1.6e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000028096	-	1440	-	ENSMAMP00000027385	479 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000018364's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000018364's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000018364	upf3a	89	55.679	ENSG00000169062	UPF3A	91	55.902	Homo_sapiens
ENSMAMG00000018364	upf3a	100	91.232	ENSAPOG00000013484	upf3a	100	91.232	Acanthochromis_polyacanthus
ENSMAMG00000018364	upf3a	88	51.902	ENSAPOG00000012775	upf3b	93	51.549	Acanthochromis_polyacanthus
ENSMAMG00000018364	upf3a	88	56.054	ENSAMEG00000004259	UPF3A	94	56.054	Ailuropoda_melanoleuca
ENSMAMG00000018364	upf3a	83	51.059	ENSAMEG00000000163	UPF3B	84	49.652	Ailuropoda_melanoleuca
ENSMAMG00000018364	upf3a	98	92.437	ENSACIG00000020468	upf3a	99	92.437	Amphilophus_citrinellus
ENSMAMG00000018364	upf3a	100	91.649	ENSAOCG00000020784	upf3a	100	91.649	Amphiprion_ocellaris
ENSMAMG00000018364	upf3a	84	50.816	ENSAOCG00000000706	upf3b	93	50.670	Amphiprion_ocellaris
ENSMAMG00000018364	upf3a	100	91.649	ENSAPEG00000003519	upf3a	100	91.649	Amphiprion_percula
ENSMAMG00000018364	upf3a	84	50.580	ENSAPEG00000005545	upf3b	93	50.889	Amphiprion_percula
ENSMAMG00000018364	upf3a	100	90.605	ENSATEG00000005843	upf3a	100	90.605	Anabas_testudineus
ENSMAMG00000018364	upf3a	84	50.698	ENSATEG00000018742	upf3b	89	50.226	Anabas_testudineus
ENSMAMG00000018364	upf3a	83	64.964	ENSACAG00000001540	UPF3A	99	62.673	Anolis_carolinensis
ENSMAMG00000018364	upf3a	87	44.570	ENSACAG00000003625	UPF3B	89	49.336	Anolis_carolinensis
ENSMAMG00000018364	upf3a	95	51.844	ENSANAG00000021713	UPF3A	99	52.049	Aotus_nancymaae
ENSMAMG00000018364	upf3a	100	92.931	ENSACLG00000026274	upf3a	100	92.931	Astatotilapia_calliptera
ENSMAMG00000018364	upf3a	99	78.033	ENSAMXG00000002608	upf3a	100	78.033	Astyanax_mexicanus
ENSMAMG00000018364	upf3a	52	30.769	WBGene00004882	smg-4	51	32.386	Caenorhabditis_elegans
ENSMAMG00000018364	upf3a	91	53.996	ENSCJAG00000019102	UPF3A	92	54.212	Callithrix_jacchus
ENSMAMG00000018364	upf3a	83	51.064	ENSCAFG00000018426	UPF3B	86	49.650	Canis_familiaris
ENSMAMG00000018364	upf3a	89	55.457	ENSCAFG00000006504	UPF3A	93	54.120	Canis_familiaris
ENSMAMG00000018364	upf3a	89	55.457	ENSCAFG00020014268	UPF3A	90	54.120	Canis_lupus_dingo
ENSMAMG00000018364	upf3a	83	45.433	ENSCAFG00020004074	UPF3B	67	73.973	Canis_lupus_dingo
ENSMAMG00000018364	upf3a	89	53.452	ENSCHIG00000008682	UPF3A	85	53.452	Capra_hircus
ENSMAMG00000018364	upf3a	77	54.404	ENSTSYG00000001918	UPF3A	99	54.145	Carlito_syrichta
ENSMAMG00000018364	upf3a	66	62.500	ENSCPOG00000006824	UPF3A	76	62.500	Cavia_porcellus
ENSMAMG00000018364	upf3a	81	37.905	ENSCCAG00000029813	-	56	58.580	Cebus_capucinus
ENSMAMG00000018364	upf3a	93	54.167	ENSCCAG00000018406	UPF3A	97	54.375	Cebus_capucinus
ENSMAMG00000018364	upf3a	93	56.209	ENSCATG00000029733	UPF3A	94	56.427	Cercocebus_atys
ENSMAMG00000018364	upf3a	93	55.844	ENSCSAG00000017388	UPF3A	94	56.061	Chlorocebus_sabaeus
ENSMAMG00000018364	upf3a	77	60.322	ENSCGRG00001017387	Upf3a	87	58.713	Cricetulus_griseus_chok1gshd
ENSMAMG00000018364	upf3a	77	60.322	ENSCGRG00000001468	Upf3a	87	58.713	Cricetulus_griseus_crigri
ENSMAMG00000018364	upf3a	81	52.029	ENSCSEG00000002046	upf3b	86	53.563	Cynoglossus_semilaevis
ENSMAMG00000018364	upf3a	99	87.238	ENSCSEG00000005106	upf3a	99	87.238	Cynoglossus_semilaevis
ENSMAMG00000018364	upf3a	85	44.056	ENSCVAG00000005030	upf3b	91	43.607	Cyprinodon_variegatus
ENSMAMG00000018364	upf3a	100	84.167	ENSCVAG00000022333	upf3a	100	84.167	Cyprinodon_variegatus
ENSMAMG00000018364	upf3a	82	48.624	ENSDARG00000000489	upf3b	88	50.575	Danio_rerio
ENSMAMG00000018364	upf3a	99	76.409	ENSDARG00000069297	upf3a	100	76.409	Danio_rerio
ENSMAMG00000018364	upf3a	81	60.437	ENSDNOG00000034391	UPF3A	93	60.437	Dasypus_novemcinctus
ENSMAMG00000018364	upf3a	92	50.833	ENSETEG00000010110	UPF3A	96	50.833	Echinops_telfairi
ENSMAMG00000018364	upf3a	83	46.062	ENSEASG00005012919	UPF3B	70	71.014	Equus_asinus_asinus
ENSMAMG00000018364	upf3a	91	54.957	ENSEASG00005021884	UPF3A	93	54.957	Equus_asinus_asinus
ENSMAMG00000018364	upf3a	83	46.062	ENSECAG00000016947	UPF3B	70	64.286	Equus_caballus
ENSMAMG00000018364	upf3a	89	56.885	ENSECAG00000017141	UPF3A	93	55.508	Equus_caballus
ENSMAMG00000018364	upf3a	98	79.665	ENSELUG00000011050	upf3a	99	79.498	Esox_lucius
ENSMAMG00000018364	upf3a	91	56.304	ENSFCAG00000014602	UPF3A	92	56.304	Felis_catus
ENSMAMG00000018364	upf3a	83	51.100	ENSFDAG00000018869	UPF3B	89	48.026	Fukomys_damarensis
ENSMAMG00000018364	upf3a	67	78.834	ENSGMOG00000019615	upf3a	100	75.568	Gadus_morhua
ENSMAMG00000018364	upf3a	100	85.000	ENSGAFG00000021170	upf3a	100	85.000	Gambusia_affinis
ENSMAMG00000018364	upf3a	67	82.812	ENSGACG00000001972	upf3a	100	80.058	Gasterosteus_aculeatus
ENSMAMG00000018364	upf3a	80	49.048	ENSGACG00000017435	upf3b	91	43.237	Gasterosteus_aculeatus
ENSMAMG00000018364	upf3a	83	44.884	ENSGAGG00000001219	UPF3B	86	50.827	Gopherus_agassizii
ENSMAMG00000018364	upf3a	81	46.939	ENSGGOG00000041219	-	85	45.885	Gorilla_gorilla
ENSMAMG00000018364	upf3a	81	46.939	ENSGGOG00000043074	-	81	45.663	Gorilla_gorilla
ENSMAMG00000018364	upf3a	89	56.136	ENSGGOG00000015428	UPF3A	91	56.125	Gorilla_gorilla
ENSMAMG00000018364	upf3a	100	91.858	ENSHBUG00000011325	upf3a	99	92.050	Haplochromis_burtoni
ENSMAMG00000018364	upf3a	78	55.469	ENSHGLG00000001544	UPF3A	93	54.962	Heterocephalus_glaber_female
ENSMAMG00000018364	upf3a	78	55.469	ENSHGLG00100013244	UPF3A	93	54.962	Heterocephalus_glaber_male
ENSMAMG00000018364	upf3a	82	52.941	ENSHCOG00000017004	upf3b	93	50.446	Hippocampus_comes
ENSMAMG00000018364	upf3a	94	77.851	ENSHCOG00000013985	upf3a	94	78.728	Hippocampus_comes
ENSMAMG00000018364	upf3a	98	77.070	ENSIPUG00000023450	upf3a	99	76.907	Ictalurus_punctatus
ENSMAMG00000018364	upf3a	100	88.958	ENSKMAG00000004381	upf3a	100	88.958	Kryptolebias_marmoratus
ENSMAMG00000018364	upf3a	86	47.285	ENSKMAG00000020300	upf3b	91	49.433	Kryptolebias_marmoratus
ENSMAMG00000018364	upf3a	98	85.350	ENSLBEG00000021570	upf3a	100	84.144	Labrus_bergylta
ENSMAMG00000018364	upf3a	61	40.896	ENSLACG00000006645	UPF3A	66	87.719	Latimeria_chalumnae
ENSMAMG00000018364	upf3a	97	73.150	ENSLOCG00000002665	upf3a	98	73.150	Lepisosteus_oculatus
ENSMAMG00000018364	upf3a	83	49.296	ENSLAFG00000023358	UPF3A	95	49.296	Loxodonta_africana
ENSMAMG00000018364	upf3a	93	54.705	ENSMFAG00000045016	UPF3A	94	54.486	Macaca_fascicularis
ENSMAMG00000018364	upf3a	88	57.042	ENSMMUG00000007449	UPF3A	94	56.319	Macaca_mulatta
ENSMAMG00000018364	upf3a	85	58.637	ENSMNEG00000036402	UPF3A	82	58.637	Macaca_nemestrina
ENSMAMG00000018364	upf3a	85	58.151	ENSMLEG00000014726	UPF3A	93	58.151	Mandrillus_leucophaeus
ENSMAMG00000018364	upf3a	100	92.931	ENSMZEG00005021571	upf3a	100	92.931	Maylandia_zebra
ENSMAMG00000018364	upf3a	87	62.238	ENSMGAG00000014837	UPF3A	99	62.529	Meleagris_gallopavo
ENSMAMG00000018364	upf3a	56	68.231	ENSMOCG00000000550	Upf3a	57	70.098	Microtus_ochrogaster
ENSMAMG00000018364	upf3a	86	44.009	ENSMMOG00000004183	upf3b	92	45.946	Mola_mola
ENSMAMG00000018364	upf3a	100	89.792	ENSMMOG00000019751	upf3a	100	89.792	Mola_mola
ENSMAMG00000018364	upf3a	84	65.060	ENSMODG00000003159	UPF3A	93	65.865	Monodelphis_domestica
ENSMAMG00000018364	upf3a	79	60.367	MGP_CAROLIEiJ_G0030848	Upf3a	89	58.182	Mus_caroli
ENSMAMG00000018364	upf3a	80	58.734	ENSMUSG00000038398	Upf3a	92	58.734	Mus_musculus
ENSMAMG00000018364	upf3a	77	62.234	MGP_PahariEiJ_G0021311	Upf3a	87	61.968	Mus_pahari
ENSMAMG00000018364	upf3a	80	58.734	MGP_SPRETEiJ_G0031958	Upf3a	92	58.734	Mus_spretus
ENSMAMG00000018364	upf3a	92	54.641	ENSMPUG00000009139	UPF3A	94	54.641	Mustela_putorius_furo
ENSMAMG00000018364	upf3a	83	50.591	ENSMPUG00000001531	UPF3B	86	49.417	Mustela_putorius_furo
ENSMAMG00000018364	upf3a	81	58.968	ENSMLUG00000015905	UPF3A	92	58.968	Myotis_lucifugus
ENSMAMG00000018364	upf3a	81	57.393	ENSNGAG00000019314	Upf3a	94	57.393	Nannospalax_galili
ENSMAMG00000018364	upf3a	100	92.067	ENSNBRG00000000828	upf3a	100	92.067	Neolamprologus_brichardi
ENSMAMG00000018364	upf3a	89	55.782	ENSNLEG00000007563	UPF3A	91	56.444	Nomascus_leucogenys
ENSMAMG00000018364	upf3a	100	91.286	ENSONIG00000006817	upf3a	100	91.286	Oreochromis_niloticus
ENSMAMG00000018364	upf3a	74	57.453	ENSOANG00000006985	-	95	57.995	Ornithorhynchus_anatinus
ENSMAMG00000018364	upf3a	100	84.551	ENSORLG00000010911	upf3a	100	84.551	Oryzias_latipes
ENSMAMG00000018364	upf3a	100	82.255	ENSORLG00020014317	upf3a	100	82.255	Oryzias_latipes_hni
ENSMAMG00000018364	upf3a	83	41.589	ENSORLG00020003758	upf3b	56	62.573	Oryzias_latipes_hni
ENSMAMG00000018364	upf3a	100	83.507	ENSORLG00015017339	upf3a	58	83.507	Oryzias_latipes_hsok
ENSMAMG00000018364	upf3a	100	84.342	ENSOMEG00000014425	upf3a	100	84.342	Oryzias_melastigma
ENSMAMG00000018364	upf3a	75	60.313	ENSOGAG00000004788	UPF3A	92	60.313	Otolemur_garnettii
ENSMAMG00000018364	upf3a	84	56.938	ENSOARG00000009004	UPF3A	84	56.938	Ovis_aries
ENSMAMG00000018364	upf3a	89	55.679	ENSPPAG00000042267	UPF3A	91	55.902	Pan_paniscus
ENSMAMG00000018364	upf3a	91	56.087	ENSPPRG00000025062	UPF3A	92	56.087	Panthera_pardus
ENSMAMG00000018364	upf3a	84	50.463	ENSPPRG00000023536	UPF3B	85	48.864	Panthera_pardus
ENSMAMG00000018364	upf3a	81	43.641	ENSPTRG00000051640	-	85	42.394	Pan_troglodytes
ENSMAMG00000018364	upf3a	81	46.429	ENSPTRG00000041835	-	85	43.367	Pan_troglodytes
ENSMAMG00000018364	upf3a	81	47.132	ENSPTRG00000041187	-	86	43.878	Pan_troglodytes
ENSMAMG00000018364	upf3a	89	55.679	ENSPTRG00000006073	UPF3A	91	55.902	Pan_troglodytes
ENSMAMG00000018364	upf3a	89	58.409	ENSPANG00000004346	UPF3A	90	58.409	Papio_anubis
ENSMAMG00000018364	upf3a	90	49.345	ENSPKIG00000019226	upf3b	88	66.667	Paramormyrops_kingsleyae
ENSMAMG00000018364	upf3a	97	71.992	ENSPKIG00000004422	upf3a	98	71.784	Paramormyrops_kingsleyae
ENSMAMG00000018364	upf3a	83	66.262	ENSPSIG00000007468	UPF3A	96	66.262	Pelodiscus_sinensis
ENSMAMG00000018364	upf3a	100	84.330	ENSPMGG00000012696	upf3a	100	84.330	Periophthalmus_magnuspinnatus
ENSMAMG00000018364	upf3a	77	61.290	ENSPEMG00000019968	-	87	61.290	Peromyscus_maniculatus_bairdii
ENSMAMG00000018364	upf3a	76	67.227	ENSPCIG00000019590	-	90	68.447	Phascolarctos_cinereus
ENSMAMG00000018364	upf3a	88	44.318	ENSPCIG00000028914	UPF3B	88	44.545	Phascolarctos_cinereus
ENSMAMG00000018364	upf3a	100	85.386	ENSPFOG00000013222	upf3a	100	85.386	Poecilia_formosa
ENSMAMG00000018364	upf3a	99	84.144	ENSPLAG00000011960	upf3a	100	84.144	Poecilia_latipinna
ENSMAMG00000018364	upf3a	100	85.921	ENSPMEG00000000836	upf3a	100	85.921	Poecilia_mexicana
ENSMAMG00000018364	upf3a	89	55.679	ENSPPYG00000005536	UPF3A	91	55.902	Pongo_abelii
ENSMAMG00000018364	upf3a	86	43.848	ENSPCOG00000021960	UPF3B	87	49.107	Propithecus_coquereli
ENSMAMG00000018364	upf3a	82	56.763	ENSPVAG00000005656	UPF3A	81	56.618	Pteropus_vampyrus
ENSMAMG00000018364	upf3a	100	92.931	ENSPNYG00000011289	upf3a	100	92.931	Pundamilia_nyererei
ENSMAMG00000018364	upf3a	99	77.406	ENSPNAG00000019532	upf3a	100	77.406	Pygocentrus_nattereri
ENSMAMG00000018364	upf3a	84	49.886	ENSPNAG00000021528	upf3b	55	73.171	Pygocentrus_nattereri
ENSMAMG00000018364	upf3a	69	64.048	ENSRNOG00000017397	Upf3a	81	64.048	Rattus_norvegicus
ENSMAMG00000018364	upf3a	87	57.346	ENSRBIG00000034007	UPF3A	92	57.176	Rhinopithecus_bieti
ENSMAMG00000018364	upf3a	85	58.293	ENSRROG00000012212	UPF3A	84	58.293	Rhinopithecus_roxellana
ENSMAMG00000018364	upf3a	75	54.933	ENSSBOG00000029989	UPF3A	92	49.237	Saimiri_boliviensis_boliviensis
ENSMAMG00000018364	upf3a	83	65.291	ENSSHAG00000009895	UPF3A	94	66.102	Sarcophilus_harrisii
ENSMAMG00000018364	upf3a	52	68.462	ENSSFOG00015005614	upf3b	90	47.664	Scleropages_formosus
ENSMAMG00000018364	upf3a	99	69.311	ENSSFOG00015021851	upf3a	99	68.644	Scleropages_formosus
ENSMAMG00000018364	upf3a	100	86.354	ENSSMAG00000003858	upf3a	100	87.576	Scophthalmus_maximus
ENSMAMG00000018364	upf3a	50	68.127	ENSSMAG00000012913	upf3b	88	48.747	Scophthalmus_maximus
ENSMAMG00000018364	upf3a	100	93.946	ENSSDUG00000009680	upf3a	100	93.946	Seriola_dumerili
ENSMAMG00000018364	upf3a	100	92.067	ENSSLDG00000009700	upf3a	100	92.067	Seriola_lalandi_dorsalis
ENSMAMG00000018364	upf3a	80	48.500	ENSSARG00000007262	UPF3A	92	47.250	Sorex_araneus
ENSMAMG00000018364	upf3a	100	91.892	ENSSPAG00000007938	upf3a	100	91.892	Stegastes_partitus
ENSMAMG00000018364	upf3a	82	57.108	ENSSSCG00000024679	UPF3A	78	57.002	Sus_scrofa
ENSMAMG00000018364	upf3a	83	66.910	ENSTGUG00000009493	UPF3A	99	66.910	Taeniopygia_guttata
ENSMAMG00000018364	upf3a	100	82.463	ENSTRUG00000012730	upf3a	99	83.015	Takifugu_rubripes
ENSMAMG00000018364	upf3a	84	74.634	ENSTNIG00000014973	upf3a	100	74.390	Tetraodon_nigroviridis
ENSMAMG00000018364	upf3a	73	54.247	ENSTTRG00000015414	UPF3A	78	52.030	Tursiops_truncatus
ENSMAMG00000018364	upf3a	81	57.143	ENSVPAG00000003525	UPF3A	94	57.393	Vicugna_pacos
ENSMAMG00000018364	upf3a	83	45.433	ENSVVUG00000011594	UPF3B	77	71.515	Vulpes_vulpes
ENSMAMG00000018364	upf3a	90	53.378	ENSXETG00000002572	upf3a	100	53.378	Xenopus_tropicalis
ENSMAMG00000018364	upf3a	83	43.897	ENSXETG00000007440	upf3b	71	72.561	Xenopus_tropicalis
ENSMAMG00000018364	upf3a	100	85.417	ENSXMAG00000013452	upf3a	100	85.417	Xiphophorus_maculatus
ENSMAMG00000018364	upf3a	83	41.647	ENSXMAG00000013680	upf3b	89	50.000	Xiphophorus_maculatus