EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000020069 (Gene tree)
Gene ID: 113144937
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 2515 bases
Position: chrOOHQ01000077.1:8835969-8838483
Accession: ZDB-GENE-040426-1630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000029780	Smg4_UPF3	PF03467.15	3.6e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000030553	-	1470	-	ENSMAMP00000029780	489 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000020069's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000020069's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000020069	upf3b	97	49.000	ENSANAG00000025598	-	78	56.140	Aotus_nancymaae
ENSMAMG00000020069	upf3b	55	47.445	ENSANAG00000033169	-	95	44.521	Aotus_nancymaae
ENSMAMG00000020069	upf3b	97	50.102	ENSCAFG00020004074	UPF3B	94	45.000	Canis_lupus_dingo
ENSMAMG00000020069	upf3b	87	50.234	ENSCGRG00000007627	Upf3b	93	48.009	Cricetulus_griseus_crigri
ENSMAMG00000020069	upf3b	97	49.084	ENSEASG00005012919	UPF3B	96	47.251	Equus_asinus_asinus
ENSMAMG00000020069	upf3b	97	49.084	ENSECAG00000016947	UPF3B	96	47.251	Equus_caballus
ENSMAMG00000020069	upf3b	99	64.981	ENSELUG00000020389	upf3b	100	64.272	Esox_lucius
ENSMAMG00000020069	upf3b	100	70.303	ENSGACG00000017435	upf3b	71	89.231	Gasterosteus_aculeatus
ENSMAMG00000020069	upf3b	99	68.699	ENSIPUG00000019249	upf3b	99	68.089	Ictalurus_punctatus
ENSMAMG00000020069	upf3b	97	48.880	ENSLAFG00000001267	UPF3B	96	46.939	Loxodonta_africana
ENSMAMG00000020069	upf3b	88	40.647	ENSMLEG00000014726	UPF3A	53	44.788	Mandrillus_leucophaeus
ENSMAMG00000020069	upf3b	100	76.074	ENSMMOG00000004183	upf3b	100	75.869	Mola_mola
ENSMAMG00000020069	upf3b	88	50.231	ENSMODG00000010232	UPF3B	93	53.023	Monodelphis_domestica
ENSMAMG00000020069	upf3b	95	48.654	ENSMLUG00000010821	UPF3B	83	48.724	Myotis_lucifugus
ENSMAMG00000020069	upf3b	97	45.749	ENSORLG00020014317	upf3a	92	46.998	Oryzias_latipes_hni
ENSMAMG00000020069	upf3b	71	69.930	ENSORLG00020003758	upf3b	100	68.881	Oryzias_latipes_hni
ENSMAMG00000020069	upf3b	99	64.969	ENSPKIG00000019226	upf3b	93	86.806	Paramormyrops_kingsleyae
ENSMAMG00000020069	upf3b	70	62.360	ENSPCIG00000019590	-	63	68.750	Phascolarctos_cinereus
ENSMAMG00000020069	upf3b	94	45.591	ENSPLAG00000011960	upf3a	91	46.074	Poecilia_latipinna
ENSMAMG00000020069	upf3b	85	94.301	ENSPLAG00000005105	upf3b	91	82.292	Poecilia_latipinna
ENSMAMG00000020069	upf3b	99	68.623	ENSPNAG00000021528	upf3b	99	67.611	Pygocentrus_nattereri
ENSMAMG00000020069	upf3b	99	46.575	ENSSHAG00000008634	UPF3B	99	48.627	Sarcophilus_harrisii
ENSMAMG00000020069	upf3b	100	76.815	ENSSMAG00000012913	upf3b	80	90.769	Scophthalmus_maximus
ENSMAMG00000020069	upf3b	59	71.515	ENSSDUG00000009680	upf3a	55	76.404	Seriola_dumerili
ENSMAMG00000020069	upf3b	93	46.320	ENSTRUG00000012730	upf3a	83	45.622	Takifugu_rubripes
ENSMAMG00000020069	upf3b	68	55.450	ENSTBEG00000003229	UPF3B	60	54.028	Tupaia_belangeri
ENSMAMG00000020069	upf3b	97	54.268	ENSUAMG00000024565	UPF3B	94	48.750	Ursus_americanus
ENSMAMG00000020069	upf3b	88	54.503	ENSUMAG00000002150	UPF3B	87	47.285	Ursus_maritimus
ENSMAMG00000020069	upf3b	95	50.936	ENSVVUG00000011594	UPF3B	99	65.888	Vulpes_vulpes
ENSMAMG00000020069	upf3b	96	50.413	ENSXETG00000007440	upf3b	85	76.531	Xenopus_tropicalis
ENSMAMG00000020069	upf3b	63	65.882	ENSXMAG00000013452	upf3a	58	59.067	Xiphophorus_maculatus
ENSMAMG00000020069	upf3b	100	64.213	ENSXMAG00000013680	upf3b	100	71.633	Xiphophorus_maculatus