EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000020119 (Gene tree)
Gene ID: 113143237
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 14708 bases
Position: chrOOHQ01000002.1:18657632-18672339
Accession: 113143237
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000029834	EST1	PF10374.9	2.9e-13	1	1
ENSMAMP00000029829	EST1	PF10374.9	3.2e-13	1	1
ENSMAMP00000029834	EST1_DNA_bind	PF10373.9	3.4e-58	1	1
ENSMAMP00000029829	EST1_DNA_bind	PF10373.9	4.1e-58	1	1
ENSMAMP00000029834	PIN_4	PF13638.6	7.5e-20	1	1
ENSMAMP00000029829	PIN_4	PF13638.6	8.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000030608	-	4961	-	ENSMAMP00000029834	1542 (aa)	-	-
ENSMAMT00000030603	-	7519	XM_026328748	ENSMAMP00000029829	1657 (aa)	XP_026184533	UPI000E45F99E

Gene Model

Click here to download ENSMAMG00000020119's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000020119's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000020119	smg6	79	55.956	ENSG00000070366	SMG6	100	59.347	Homo_sapiens
ENSMAMG00000020119	smg6	100	81.198	ENSAPOG00000019448	smg6	100	80.346	Acanthochromis_polyacanthus
ENSMAMG00000020119	smg6	98	49.679	ENSAMEG00000007632	SMG6	83	55.972	Ailuropoda_melanoleuca
ENSMAMG00000020119	smg6	100	76.680	ENSACIG00000012997	smg6	100	76.034	Amphilophus_citrinellus
ENSMAMG00000020119	smg6	100	81.660	ENSAOCG00000002630	smg6	100	81.134	Amphiprion_ocellaris
ENSMAMG00000020119	smg6	100	81.262	ENSAPEG00000019101	smg6	100	80.765	Amphiprion_percula
ENSMAMG00000020119	smg6	100	81.274	ENSATEG00000006483	smg6	100	80.574	Anabas_testudineus
ENSMAMG00000020119	smg6	69	49.136	ENSACAG00000011783	SMG6	83	49.676	Anolis_carolinensis
ENSMAMG00000020119	smg6	98	49.904	ENSANAG00000035760	SMG6	83	56.607	Aotus_nancymaae
ENSMAMG00000020119	smg6	100	77.864	ENSACLG00000005288	smg6	100	77.293	Astatotilapia_calliptera
ENSMAMG00000020119	smg6	71	69.786	ENSAMXG00000017326	smg6	90	67.311	Astyanax_mexicanus
ENSMAMG00000020119	smg6	97	49.644	ENSBTAG00000000267	SMG6	85	55.504	Bos_taurus
ENSMAMG00000020119	smg6	79	56.495	ENSCJAG00000001820	SMG6	72	61.035	Callithrix_jacchus
ENSMAMG00000020119	smg6	79	56.279	ENSCAFG00000019260	SMG6	83	56.113	Canis_familiaris
ENSMAMG00000020119	smg6	79	56.279	ENSCAFG00020009770	SMG6	83	56.113	Canis_lupus_dingo
ENSMAMG00000020119	smg6	69	61.071	ENSCHIG00000021998	SMG6	85	55.196	Capra_hircus
ENSMAMG00000020119	smg6	82	54.301	ENSTSYG00000003406	SMG6	100	58.984	Carlito_syrichta
ENSMAMG00000020119	smg6	72	53.499	ENSCAPG00000016197	SMG6	68	54.215	Cavia_aperea
ENSMAMG00000020119	smg6	80	54.398	ENSCPOG00000014878	SMG6	84	60.952	Cavia_porcellus
ENSMAMG00000020119	smg6	80	55.941	ENSCCAG00000035801	SMG6	85	56.009	Cebus_capucinus
ENSMAMG00000020119	smg6	98	49.550	ENSCATG00000031956	SMG6	83	56.059	Cercocebus_atys
ENSMAMG00000020119	smg6	98	49.037	ENSCLAG00000006748	SMG6	84	61.429	Chinchilla_lanigera
ENSMAMG00000020119	smg6	98	49.871	ENSCSAG00000013800	SMG6	83	56.216	Chlorocebus_sabaeus
ENSMAMG00000020119	smg6	86	55.027	ENSCPBG00000020369	SMG6	96	54.793	Chrysemys_picta_bellii
ENSMAMG00000020119	smg6	97	49.611	ENSCANG00000031764	SMG6	100	59.528	Colobus_angolensis_palliatus
ENSMAMG00000020119	smg6	79	50.712	ENSCGRG00000007782	Smg6	86	50.696	Cricetulus_griseus_crigri
ENSMAMG00000020119	smg6	99	71.641	ENSCSEG00000012757	smg6	100	70.616	Cynoglossus_semilaevis
ENSMAMG00000020119	smg6	100	69.048	ENSCVAG00000012789	smg6	100	68.014	Cyprinodon_variegatus
ENSMAMG00000020119	smg6	100	56.770	ENSDARG00000100481	smg6	100	56.187	Danio_rerio
ENSMAMG00000020119	smg6	98	48.212	ENSDNOG00000048283	SMG6	83	55.477	Dasypus_novemcinctus
ENSMAMG00000020119	smg6	83	50.709	ENSDORG00000016614	Smg6	84	61.033	Dipodomys_ordii
ENSMAMG00000020119	smg6	82	87.500	ENSETEG00000016790	SMG6	71	87.500	Echinops_telfairi
ENSMAMG00000020119	smg6	62	48.403	ENSEBUG00000005059	smg6	61	48.044	Eptatretus_burgeri
ENSMAMG00000020119	smg6	80	55.412	ENSEASG00005009318	SMG6	84	55.828	Equus_asinus_asinus
ENSMAMG00000020119	smg6	80	55.513	ENSECAG00000006519	SMG6	84	55.930	Equus_caballus
ENSMAMG00000020119	smg6	79	47.266	ENSEEUG00000003493	SMG6	84	47.634	Erinaceus_europaeus
ENSMAMG00000020119	smg6	100	63.883	ENSELUG00000005934	smg6	94	70.639	Esox_lucius
ENSMAMG00000020119	smg6	80	55.709	ENSFCAG00000028817	SMG6	85	55.812	Felis_catus
ENSMAMG00000020119	smg6	85	54.121	ENSFALG00000006538	SMG6	90	53.227	Ficedula_albicollis
ENSMAMG00000020119	smg6	79	54.793	ENSFDAG00000015106	SMG6	84	60.952	Fukomys_damarensis
ENSMAMG00000020119	smg6	100	70.418	ENSFHEG00000013282	smg6	100	69.134	Fundulus_heteroclitus
ENSMAMG00000020119	smg6	50	78.947	ENSGMOG00000019077	smg6	58	78.947	Gadus_morhua
ENSMAMG00000020119	smg6	80	54.831	ENSGALG00000003108	SMG6	86	52.950	Gallus_gallus
ENSMAMG00000020119	smg6	100	70.637	ENSGAFG00000000379	smg6	100	69.516	Gambusia_affinis
ENSMAMG00000020119	smg6	87	80.000	ENSGACG00000020521	smg6	100	78.323	Gasterosteus_aculeatus
ENSMAMG00000020119	smg6	85	52.632	ENSGAGG00000025617	SMG6	90	52.485	Gopherus_agassizii
ENSMAMG00000020119	smg6	98	49.775	ENSGGOG00000017156	SMG6	83	56.084	Gorilla_gorilla
ENSMAMG00000020119	smg6	100	77.721	ENSHBUG00000021311	smg6	100	76.131	Haplochromis_burtoni
ENSMAMG00000020119	smg6	80	54.824	ENSHGLG00000012882	SMG6	84	61.429	Heterocephalus_glaber_female
ENSMAMG00000020119	smg6	80	54.615	ENSHGLG00100017815	SMG6	84	61.429	Heterocephalus_glaber_male
ENSMAMG00000020119	smg6	69	71.004	ENSHCOG00000008761	smg6	83	70.729	Hippocampus_comes
ENSMAMG00000020119	smg6	100	53.154	ENSIPUG00000012493	smg6	100	52.760	Ictalurus_punctatus
ENSMAMG00000020119	smg6	98	49.034	ENSSTOG00000028127	SMG6	84	60.952	Ictidomys_tridecemlineatus
ENSMAMG00000020119	smg6	61	52.275	ENSJJAG00000015367	Smg6	62	57.731	Jaculus_jaculus
ENSMAMG00000020119	smg6	100	75.048	ENSKMAG00000000279	smg6	100	72.754	Kryptolebias_marmoratus
ENSMAMG00000020119	smg6	100	78.443	ENSLBEG00000002184	smg6	100	76.780	Labrus_bergylta
ENSMAMG00000020119	smg6	71	65.862	ENSLOCG00000006448	smg6	99	55.134	Lepisosteus_oculatus
ENSMAMG00000020119	smg6	80	54.817	ENSLAFG00000001261	SMG6	85	54.755	Loxodonta_africana
ENSMAMG00000020119	smg6	98	49.710	ENSMFAG00000003394	SMG6	83	56.216	Macaca_fascicularis
ENSMAMG00000020119	smg6	98	49.646	ENSMMUG00000023161	SMG6	83	56.138	Macaca_mulatta
ENSMAMG00000020119	smg6	79	53.925	ENSMNEG00000044592	SMG6	83	53.840	Macaca_nemestrina
ENSMAMG00000020119	smg6	93	60.733	ENSMLEG00000029353	SMG6	84	60.664	Mandrillus_leucophaeus
ENSMAMG00000020119	smg6	100	77.606	ENSMZEG00005024736	smg6	100	76.145	Maylandia_zebra
ENSMAMG00000020119	smg6	55	53.400	ENSMGAG00000005401	-	78	53.177	Meleagris_gallopavo
ENSMAMG00000020119	smg6	80	55.419	ENSMICG00000012913	SMG6	85	55.411	Microcebus_murinus
ENSMAMG00000020119	smg6	100	72.046	ENSMMOG00000010883	smg6	100	71.266	Mola_mola
ENSMAMG00000020119	smg6	79	55.885	ENSMODG00000010622	SMG6	82	55.387	Monodelphis_domestica
ENSMAMG00000020119	smg6	100	81.842	ENSMALG00000001106	smg6	100	81.209	Monopterus_albus
ENSMAMG00000020119	smg6	79	55.556	MGP_CAROLIEiJ_G0016729	Smg6	96	66.479	Mus_caroli
ENSMAMG00000020119	smg6	79	55.504	ENSMUSG00000038290	Smg6	96	66.197	Mus_musculus
ENSMAMG00000020119	smg6	79	54.988	MGP_PahariEiJ_G0017866	Smg6	96	65.915	Mus_pahari
ENSMAMG00000020119	smg6	79	55.425	MGP_SPRETEiJ_G0017572	Smg6	96	65.915	Mus_spretus
ENSMAMG00000020119	smg6	79	56.025	ENSMPUG00000013046	SMG6	83	55.912	Mustela_putorius_furo
ENSMAMG00000020119	smg6	98	49.838	ENSMLUG00000005739	SMG6	83	55.887	Myotis_lucifugus
ENSMAMG00000020119	smg6	79	55.224	ENSNGAG00000007287	Smg6	84	61.429	Nannospalax_galili
ENSMAMG00000020119	smg6	100	73.745	ENSNBRG00000009511	smg6	99	75.131	Neolamprologus_brichardi
ENSMAMG00000020119	smg6	97	49.903	ENSNLEG00000017171	SMG6	100	59.347	Nomascus_leucogenys
ENSMAMG00000020119	smg6	79	55.374	ENSMEUG00000015804	SMG6	88	54.208	Notamacropus_eugenii
ENSMAMG00000020119	smg6	55	62.371	ENSOPRG00000000579	SMG6	83	62.245	Ochotona_princeps
ENSMAMG00000020119	smg6	79	49.646	ENSODEG00000008038	SMG6	81	57.310	Octodon_degus
ENSMAMG00000020119	smg6	100	77.542	ENSONIG00000005594	smg6	100	81.000	Oreochromis_niloticus
ENSMAMG00000020119	smg6	79	55.919	ENSOCUG00000013018	SMG6	83	56.041	Oryctolagus_cuniculus
ENSMAMG00000020119	smg6	100	69.221	ENSORLG00000003317	smg6	100	68.459	Oryzias_latipes
ENSMAMG00000020119	smg6	100	69.290	ENSORLG00020015343	smg6	100	68.301	Oryzias_latipes_hni
ENSMAMG00000020119	smg6	100	69.375	ENSORLG00015020454	smg6	100	68.660	Oryzias_latipes_hsok
ENSMAMG00000020119	smg6	100	68.452	ENSOMEG00000010838	smg6	100	68.481	Oryzias_melastigma
ENSMAMG00000020119	smg6	98	49.011	ENSOGAG00000004483	SMG6	85	55.368	Otolemur_garnettii
ENSMAMG00000020119	smg6	80	55.427	ENSOARG00000015076	SMG6	87	55.350	Ovis_aries
ENSMAMG00000020119	smg6	98	49.614	ENSPPAG00000043296	SMG6	83	55.850	Pan_paniscus
ENSMAMG00000020119	smg6	80	55.709	ENSPPRG00000014581	SMG6	85	55.812	Panthera_pardus
ENSMAMG00000020119	smg6	80	55.709	ENSPTIG00000008925	SMG6	100	59.347	Panthera_tigris_altaica
ENSMAMG00000020119	smg6	98	49.742	ENSPTRG00000008544	SMG6	100	59.347	Pan_troglodytes
ENSMAMG00000020119	smg6	98	49.742	ENSPANG00000024588	SMG6	83	56.260	Papio_anubis
ENSMAMG00000020119	smg6	72	53.002	ENSPSIG00000006660	SMG6	81	52.991	Pelodiscus_sinensis
ENSMAMG00000020119	smg6	95	80.381	ENSPMGG00000000844	smg6	99	79.837	Periophthalmus_magnuspinnatus
ENSMAMG00000020119	smg6	79	55.730	ENSPEMG00000020707	Smg6	85	61.429	Peromyscus_maniculatus_bairdii
ENSMAMG00000020119	smg6	100	71.512	ENSPFOG00000012035	smg6	95	77.065	Poecilia_formosa
ENSMAMG00000020119	smg6	100	71.512	ENSPLAG00000017660	smg6	100	69.892	Poecilia_latipinna
ENSMAMG00000020119	smg6	100	71.576	ENSPMEG00000000258	smg6	100	69.892	Poecilia_mexicana
ENSMAMG00000020119	smg6	100	71.014	ENSPREG00000010066	smg6	100	69.701	Poecilia_reticulata
ENSMAMG00000020119	smg6	98	46.316	ENSPPYG00000007790	SMG6	83	52.292	Pongo_abelii
ENSMAMG00000020119	smg6	80	52.414	ENSPCAG00000000552	SMG6	84	52.334	Procavia_capensis
ENSMAMG00000020119	smg6	79	55.756	ENSPCOG00000020925	SMG6	83	55.790	Propithecus_coquereli
ENSMAMG00000020119	smg6	79	52.516	ENSPVAG00000002159	SMG6	78	53.586	Pteropus_vampyrus
ENSMAMG00000020119	smg6	100	74.053	ENSPNYG00000024151	smg6	99	75.049	Pundamilia_nyererei
ENSMAMG00000020119	smg6	89	59.035	ENSPNAG00000015480	smg6	90	58.592	Pygocentrus_nattereri
ENSMAMG00000020119	smg6	79	55.329	ENSRNOG00000003041	Smg6	96	66.761	Rattus_norvegicus
ENSMAMG00000020119	smg6	79	56.191	ENSRBIG00000024746	SMG6	83	56.084	Rhinopithecus_bieti
ENSMAMG00000020119	smg6	79	56.191	ENSRROG00000030423	SMG6	100	59.347	Rhinopithecus_roxellana
ENSMAMG00000020119	smg6	79	56.034	ENSSBOG00000022518	SMG6	83	54.382	Saimiri_boliviensis_boliviensis
ENSMAMG00000020119	smg6	98	49.136	ENSSHAG00000010045	SMG6	86	54.277	Sarcophilus_harrisii
ENSMAMG00000020119	smg6	97	55.485	ENSSFOG00015005436	smg6	92	56.051	Scleropages_formosus
ENSMAMG00000020119	smg6	100	79.910	ENSSMAG00000019777	smg6	100	79.294	Scophthalmus_maximus
ENSMAMG00000020119	smg6	100	85.171	ENSSDUG00000016412	smg6	100	84.482	Seriola_dumerili
ENSMAMG00000020119	smg6	97	84.824	ENSSLDG00000020747	smg6	98	84.824	Seriola_lalandi_dorsalis
ENSMAMG00000020119	smg6	80	54.440	ENSSPUG00000007152	SMG6	84	54.616	Sphenodon_punctatus
ENSMAMG00000020119	smg6	100	81.842	ENSSPAG00000015633	smg6	100	80.502	Stegastes_partitus
ENSMAMG00000020119	smg6	79	56.416	ENSSSCG00000017826	SMG6	83	56.182	Sus_scrofa
ENSMAMG00000020119	smg6	80	55.196	ENSTGUG00000005836	SMG6	85	54.854	Taeniopygia_guttata
ENSMAMG00000020119	smg6	97	71.000	ENSTRUG00000000358	smg6	97	74.792	Takifugu_rubripes
ENSMAMG00000020119	smg6	98	75.255	ENSTNIG00000016164	smg6	100	80.527	Tetraodon_nigroviridis
ENSMAMG00000020119	smg6	79	52.025	ENSTBEG00000011424	SMG6	72	57.286	Tupaia_belangeri
ENSMAMG00000020119	smg6	71	57.386	ENSTTRG00000001175	SMG6	74	57.183	Tursiops_truncatus
ENSMAMG00000020119	smg6	79	56.162	ENSUAMG00000025152	SMG6	85	55.763	Ursus_americanus
ENSMAMG00000020119	smg6	79	55.869	ENSUMAG00000009306	SMG6	85	55.703	Ursus_maritimus
ENSMAMG00000020119	smg6	64	88.889	ENSVPAG00000000225	SMG6	70	88.889	Vicugna_pacos
ENSMAMG00000020119	smg6	79	56.355	ENSVVUG00000021727	SMG6	84	56.185	Vulpes_vulpes
ENSMAMG00000020119	smg6	70	54.977	ENSXETG00000023799	SMG6	85	50.866	Xenopus_tropicalis
ENSMAMG00000020119	smg6	100	69.201	ENSXCOG00000009867	smg6	99	67.744	Xiphophorus_couchianus
ENSMAMG00000020119	smg6	100	71.410	ENSXMAG00000010321	smg6	100	70.131	Xiphophorus_maculatus