EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAUG00000003601 (Gene tree)
Gene ID: 101840977
Gene Symbol: Cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Mesocricetus_auratus
Status: putative
Strand: Minus strand
Length: 12449 bases
Position: chrKB708338.1:1207668-1220116
Accession: 101840977
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAUP00000003360	CPSF_A	PF03178.15	2.3e-92	1	1
ENSMAUP00000003374	CPSF_A	PF03178.15	2.3e-92	1	1
ENSMAUP00000003366	CPSF_A	PF03178.15	3.6e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAUT00000004614	-	4326	-	ENSMAUP00000003366	1441 (aa)	-	-
ENSMAUT00000004605	-	4467	XM_005085997	ENSMAUP00000003360	1441 (aa)	XP_005086054	A0A1U7QU45
ENSMAUT00000004626	-	4326	-	ENSMAUP00000003374	1441 (aa)	-	-

Gene Model

Click here to download ENSMAUG00000003601's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAUG00000003601's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAUG00000003601	Cpsf1	100	96.258	ENSG00000071894	CPSF1	100	96.258	Homo_sapiens
ENSMAUG00000003601	Cpsf1	100	77.755	ENSAPOG00000019621	cpsf1	100	77.958	Acanthochromis_polyacanthus
ENSMAUG00000003601	Cpsf1	97	94.210	ENSAMEG00000005557	CPSF1	100	94.210	Ailuropoda_melanoleuca
ENSMAUG00000003601	Cpsf1	100	78.324	ENSACIG00000006112	cpsf1	100	78.670	Amphilophus_citrinellus
ENSMAUG00000003601	Cpsf1	100	79.187	ENSAOCG00000007120	cpsf1	100	79.394	Amphiprion_ocellaris
ENSMAUG00000003601	Cpsf1	100	79.531	ENSAPEG00000005755	cpsf1	100	79.835	Amphiprion_percula
ENSMAUG00000003601	Cpsf1	100	77.598	ENSATEG00000011097	cpsf1	100	78.070	Anabas_testudineus
ENSMAUG00000003601	Cpsf1	93	81.236	ENSACAG00000009655	CPSF1	100	81.236	Anolis_carolinensis
ENSMAUG00000003601	Cpsf1	100	96.255	ENSANAG00000036514	CPSF1	100	96.255	Aotus_nancymaae
ENSMAUG00000003601	Cpsf1	100	77.355	ENSACLG00000012231	cpsf1	99	79.055	Astatotilapia_calliptera
ENSMAUG00000003601	Cpsf1	100	74.066	ENSAMXG00000008485	cpsf1	100	74.066	Astyanax_mexicanus
ENSMAUG00000003601	Cpsf1	100	94.078	ENSBTAG00000008355	CPSF1	100	94.452	Bos_taurus
ENSMAUG00000003601	Cpsf1	100	32.021	WBGene00022301	cpsf-1	100	40.169	Caenorhabditis_elegans
ENSMAUG00000003601	Cpsf1	100	96.255	ENSCJAG00000021421	CPSF1	100	96.255	Callithrix_jacchus
ENSMAUG00000003601	Cpsf1	97	95.851	ENSCAFG00000001600	CPSF1	100	96.025	Canis_familiaris
ENSMAUG00000003601	Cpsf1	100	95.983	ENSCAFG00020020821	CPSF1	100	95.983	Canis_lupus_dingo
ENSMAUG00000003601	Cpsf1	100	90.499	ENSCHIG00000015833	CPSF1	100	90.499	Capra_hircus
ENSMAUG00000003601	Cpsf1	100	97.018	ENSTSYG00000028560	CPSF1	100	97.018	Carlito_syrichta
ENSMAUG00000003601	Cpsf1	97	95.839	ENSCAPG00000014921	CPSF1	99	95.839	Cavia_aperea
ENSMAUG00000003601	Cpsf1	100	95.423	ENSCPOG00000011448	CPSF1	100	95.423	Cavia_porcellus
ENSMAUG00000003601	Cpsf1	100	96.394	ENSCCAG00000037658	CPSF1	100	96.394	Cebus_capucinus
ENSMAUG00000003601	Cpsf1	100	96.186	ENSCATG00000037234	CPSF1	99	97.313	Cercocebus_atys
ENSMAUG00000003601	Cpsf1	100	97.363	ENSCLAG00000012166	CPSF1	100	97.363	Chinchilla_lanigera
ENSMAUG00000003601	Cpsf1	100	96.325	ENSCSAG00000008502	CPSF1	100	96.325	Chlorocebus_sabaeus
ENSMAUG00000003601	Cpsf1	99	87.605	ENSCPBG00000018910	CPSF1	96	87.605	Chrysemys_picta_bellii
ENSMAUG00000003601	Cpsf1	96	48.637	ENSCING00000000514	-	100	48.565	Ciona_intestinalis
ENSMAUG00000003601	Cpsf1	99	48.352	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSMAUG00000003601	Cpsf1	99	90.623	ENSCANG00000032760	CPSF1	99	90.623	Colobus_angolensis_palliatus
ENSMAUG00000003601	Cpsf1	100	99.237	ENSCGRG00001016344	Cpsf1	100	99.237	Cricetulus_griseus_chok1gshd
ENSMAUG00000003601	Cpsf1	100	96.808	ENSCGRG00000003118	Cpsf1	100	96.808	Cricetulus_griseus_crigri
ENSMAUG00000003601	Cpsf1	100	77.685	ENSCSEG00000013464	cpsf1	100	77.685	Cynoglossus_semilaevis
ENSMAUG00000003601	Cpsf1	85	76.781	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSMAUG00000003601	Cpsf1	100	79.600	ENSDARG00000034178	cpsf1	100	79.669	Danio_rerio
ENSMAUG00000003601	Cpsf1	68	96.812	ENSDNOG00000043654	CPSF1	94	96.812	Dasypus_novemcinctus
ENSMAUG00000003601	Cpsf1	97	96.628	ENSDORG00000006278	Cpsf1	99	96.821	Dipodomys_ordii
ENSMAUG00000003601	Cpsf1	100	45.118	FBgn0024698	Cpsf160	100	45.013	Drosophila_melanogaster
ENSMAUG00000003601	Cpsf1	80	98.658	ENSETEG00000006022	CPSF1	83	98.658	Echinops_telfairi
ENSMAUG00000003601	Cpsf1	100	96.537	ENSEASG00005010774	CPSF1	100	96.537	Equus_asinus_asinus
ENSMAUG00000003601	Cpsf1	100	96.537	ENSECAG00000022209	CPSF1	100	96.537	Equus_caballus
ENSMAUG00000003601	Cpsf1	100	94.602	ENSEEUG00000000471	CPSF1	100	94.602	Erinaceus_europaeus
ENSMAUG00000003601	Cpsf1	100	77.450	ENSELUG00000012271	cpsf1	100	77.930	Esox_lucius
ENSMAUG00000003601	Cpsf1	100	97.155	ENSFDAG00000016060	CPSF1	100	97.155	Fukomys_damarensis
ENSMAUG00000003601	Cpsf1	100	77.066	ENSFHEG00000016801	cpsf1	100	77.135	Fundulus_heteroclitus
ENSMAUG00000003601	Cpsf1	100	77.877	ENSGMOG00000000796	cpsf1	100	78.084	Gadus_morhua
ENSMAUG00000003601	Cpsf1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSMAUG00000003601	Cpsf1	100	78.404	ENSGACG00000008703	cpsf1	100	78.449	Gasterosteus_aculeatus
ENSMAUG00000003601	Cpsf1	100	84.152	ENSGAGG00000004276	CPSF1	98	87.825	Gopherus_agassizii
ENSMAUG00000003601	Cpsf1	100	96.253	ENSGGOG00000016185	CPSF1	100	96.253	Gorilla_gorilla
ENSMAUG00000003601	Cpsf1	100	79.571	ENSHBUG00000018900	cpsf1	100	79.778	Haplochromis_burtoni
ENSMAUG00000003601	Cpsf1	100	97.294	ENSHGLG00000016139	CPSF1	100	97.294	Heterocephalus_glaber_female
ENSMAUG00000003601	Cpsf1	100	97.224	ENSHGLG00100009750	CPSF1	100	97.224	Heterocephalus_glaber_male
ENSMAUG00000003601	Cpsf1	100	77.220	ENSHCOG00000018509	cpsf1	100	77.137	Hippocampus_comes
ENSMAUG00000003601	Cpsf1	100	76.135	ENSIPUG00000011259	cpsf1	100	76.135	Ictalurus_punctatus
ENSMAUG00000003601	Cpsf1	97	96.640	ENSSTOG00000009957	CPSF1	99	96.640	Ictidomys_tridecemlineatus
ENSMAUG00000003601	Cpsf1	100	97.502	ENSJJAG00000023002	Cpsf1	100	97.502	Jaculus_jaculus
ENSMAUG00000003601	Cpsf1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSMAUG00000003601	Cpsf1	100	77.168	ENSLBEG00000003601	cpsf1	100	77.575	Labrus_bergylta
ENSMAUG00000003601	Cpsf1	88	81.971	ENSLACG00000000233	CPSF1	100	69.273	Latimeria_chalumnae
ENSMAUG00000003601	Cpsf1	100	78.591	ENSLOCG00000008484	cpsf1	100	78.867	Lepisosteus_oculatus
ENSMAUG00000003601	Cpsf1	97	95.204	ENSLAFG00000022601	CPSF1	100	95.204	Loxodonta_africana
ENSMAUG00000003601	Cpsf1	100	96.186	ENSMFAG00000037013	CPSF1	100	96.186	Macaca_fascicularis
ENSMAUG00000003601	Cpsf1	100	96.255	ENSMMUG00000007380	CPSF1	100	96.255	Macaca_mulatta
ENSMAUG00000003601	Cpsf1	97	96.270	ENSMNEG00000043564	CPSF1	100	96.270	Macaca_nemestrina
ENSMAUG00000003601	Cpsf1	100	96.255	ENSMLEG00000043010	CPSF1	99	97.313	Mandrillus_leucophaeus
ENSMAUG00000003601	Cpsf1	100	78.567	ENSMAMG00000003803	cpsf1	100	78.567	Mastacembelus_armatus
ENSMAUG00000003601	Cpsf1	100	77.424	ENSMZEG00005001168	cpsf1	100	77.632	Maylandia_zebra
ENSMAUG00000003601	Cpsf1	100	96.738	ENSMICG00000015767	CPSF1	100	96.738	Microcebus_murinus
ENSMAUG00000003601	Cpsf1	100	98.543	ENSMOCG00000022758	Cpsf1	100	98.543	Microtus_ochrogaster
ENSMAUG00000003601	Cpsf1	100	78.962	ENSMMOG00000021245	cpsf1	100	79.170	Mola_mola
ENSMAUG00000003601	Cpsf1	100	92.823	ENSMODG00000010755	CPSF1	100	92.823	Monodelphis_domestica
ENSMAUG00000003601	Cpsf1	100	77.522	ENSMALG00000020545	cpsf1	100	77.793	Monopterus_albus
ENSMAUG00000003601	Cpsf1	100	98.959	MGP_CAROLIEiJ_G0019936	Cpsf1	100	98.959	Mus_caroli
ENSMAUG00000003601	Cpsf1	100	98.820	ENSMUSG00000034022	Cpsf1	100	98.820	Mus_musculus
ENSMAUG00000003601	Cpsf1	100	98.890	MGP_PahariEiJ_G0019946	Cpsf1	100	98.890	Mus_pahari
ENSMAUG00000003601	Cpsf1	100	98.890	MGP_SPRETEiJ_G0020839	Cpsf1	100	98.890	Mus_spretus
ENSMAUG00000003601	Cpsf1	94	95.552	ENSMPUG00000006419	CPSF1	93	95.552	Mustela_putorius_furo
ENSMAUG00000003601	Cpsf1	100	97.779	ENSNGAG00000022460	Cpsf1	100	97.779	Nannospalax_galili
ENSMAUG00000003601	Cpsf1	100	74.827	ENSNBRG00000000813	cpsf1	100	74.827	Neolamprologus_brichardi
ENSMAUG00000003601	Cpsf1	86	84.631	ENSNLEG00000010633	-	100	88.889	Nomascus_leucogenys
ENSMAUG00000003601	Cpsf1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
ENSMAUG00000003601	Cpsf1	61	97.449	ENSOPRG00000004693	-	71	97.449	Ochotona_princeps
ENSMAUG00000003601	Cpsf1	100	97.502	ENSODEG00000013995	CPSF1	100	97.502	Octodon_degus
ENSMAUG00000003601	Cpsf1	100	79.709	ENSONIG00000007676	cpsf1	100	80.055	Oreochromis_niloticus
ENSMAUG00000003601	Cpsf1	58	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
ENSMAUG00000003601	Cpsf1	100	77.430	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSMAUG00000003601	Cpsf1	100	77.498	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSMAUG00000003601	Cpsf1	100	77.415	ENSORLG00015009979	cpsf1	100	77.347	Oryzias_latipes_hsok
ENSMAUG00000003601	Cpsf1	100	77.589	ENSOMEG00000011849	cpsf1	100	77.725	Oryzias_melastigma
ENSMAUG00000003601	Cpsf1	100	96.810	ENSOGAG00000000315	CPSF1	100	96.810	Otolemur_garnettii
ENSMAUG00000003601	Cpsf1	100	96.255	ENSPPAG00000019280	CPSF1	100	96.255	Pan_paniscus
ENSMAUG00000003601	Cpsf1	100	94.615	ENSPTRG00000051253	-	100	94.615	Pan_troglodytes
ENSMAUG00000003601	Cpsf1	100	96.255	ENSPTRG00000049288	-	100	96.255	Pan_troglodytes
ENSMAUG00000003601	Cpsf1	97	96.126	ENSPANG00000015005	CPSF1	100	96.126	Papio_anubis
ENSMAUG00000003601	Cpsf1	100	80.484	ENSPKIG00000002582	cpsf1	100	80.956	Paramormyrops_kingsleyae
ENSMAUG00000003601	Cpsf1	100	92.754	ENSPCIG00000009035	CPSF1	100	92.754	Phascolarctos_cinereus
ENSMAUG00000003601	Cpsf1	100	76.371	ENSPFOG00000012870	cpsf1	100	76.371	Poecilia_formosa
ENSMAUG00000003601	Cpsf1	100	75.981	ENSPREG00000016307	cpsf1	100	76.049	Poecilia_reticulata
ENSMAUG00000003601	Cpsf1	100	88.280	ENSPPYG00000018973	CPSF1	100	88.280	Pongo_abelii
ENSMAUG00000003601	Cpsf1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSMAUG00000003601	Cpsf1	100	92.996	ENSPCOG00000020001	CPSF1	100	92.996	Propithecus_coquereli
ENSMAUG00000003601	Cpsf1	91	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
ENSMAUG00000003601	Cpsf1	100	78.537	ENSPNYG00000004906	cpsf1	100	78.742	Pundamilia_nyererei
ENSMAUG00000003601	Cpsf1	100	74.862	ENSPNAG00000024395	cpsf1	100	74.862	Pygocentrus_nattereri
ENSMAUG00000003601	Cpsf1	100	99.028	ENSRNOG00000030705	Cpsf1	100	99.028	Rattus_norvegicus
ENSMAUG00000003601	Cpsf1	100	96.255	ENSRBIG00000044907	CPSF1	100	96.255	Rhinopithecus_bieti
ENSMAUG00000003601	Cpsf1	100	96.186	ENSRROG00000044861	CPSF1	100	96.186	Rhinopithecus_roxellana
ENSMAUG00000003601	Cpsf1	97	96.270	ENSSBOG00000027177	CPSF1	100	96.270	Saimiri_boliviensis_boliviensis
ENSMAUG00000003601	Cpsf1	100	92.616	ENSSHAG00000006500	CPSF1	100	92.616	Sarcophilus_harrisii
ENSMAUG00000003601	Cpsf1	100	78.084	ENSSFOG00015004606	cpsf1	100	81.223	Scleropages_formosus
ENSMAUG00000003601	Cpsf1	100	77.522	ENSSMAG00000020547	cpsf1	100	77.793	Scophthalmus_maximus
ENSMAUG00000003601	Cpsf1	100	79.461	ENSSDUG00000001100	cpsf1	100	79.530	Seriola_dumerili
ENSMAUG00000003601	Cpsf1	100	79.516	ENSSLDG00000003619	cpsf1	100	79.585	Seriola_lalandi_dorsalis
ENSMAUG00000003601	Cpsf1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSMAUG00000003601	Cpsf1	96	87.671	ENSSPUG00000014396	CPSF1	100	87.671	Sphenodon_punctatus
ENSMAUG00000003601	Cpsf1	100	77.943	ENSSPAG00000005349	cpsf1	100	78.078	Stegastes_partitus
ENSMAUG00000003601	Cpsf1	100	95.014	ENSSSCG00000005906	CPSF1	100	95.014	Sus_scrofa
ENSMAUG00000003601	Cpsf1	96	78.121	ENSTRUG00000013134	cpsf1	99	78.261	Takifugu_rubripes
ENSMAUG00000003601	Cpsf1	100	78.763	ENSTNIG00000014027	cpsf1	100	78.832	Tetraodon_nigroviridis
ENSMAUG00000003601	Cpsf1	77	88.468	ENSTBEG00000001756	CPSF1	91	88.468	Tupaia_belangeri
ENSMAUG00000003601	Cpsf1	90	97.064	ENSTTRG00000001937	CPSF1	90	97.064	Tursiops_truncatus
ENSMAUG00000003601	Cpsf1	97	96.066	ENSUAMG00000006476	CPSF1	98	96.066	Ursus_americanus
ENSMAUG00000003601	Cpsf1	100	77.439	ENSXCOG00000003608	cpsf1	100	77.578	Xiphophorus_couchianus
ENSMAUG00000003601	Cpsf1	100	76.918	ENSXMAG00000005798	cpsf1	100	77.125	Xiphophorus_maculatus