EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAUG00000008133 (Gene tree)
Gene ID: 101828117
Gene Symbol: Smarca1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mesocricetus_auratus
Status: putative
Strand: Minus strand
Length: 67913 bases
Position: chrKB708193.1:9326483-9394395
Accession: 101828117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAUP00000006175	ResIII	PF04851.15	9.3e-12	1	1
ENSMAUP00000006170	ResIII	PF04851.15	9.9e-12	1	1
ENSMAUP00000006170	DEAD	PF00270.29	6.1e-07	1	1
ENSMAUP00000006175	DEAD	PF00270.29	6.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAUT00000009975	-	3165	XM_005076838	ENSMAUP00000006175	1054 (aa)	XP_005076895	A0A1U8C5N1
ENSMAUT00000009970	-	3344	XM_005076839	ENSMAUP00000006170	1047 (aa)	XP_005076896	A0A1U7QXM4

Gene Model

Click here to download ENSMAUG00000008133's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAUG00000008133's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAUG00000008133	Smarca1	52	48.606	ENSMAUG00000021941	Hells	68	48.606
ENSMAUG00000008133	Smarca1	91	85.338	ENSMAUG00000015902	Smarca5	94	85.224

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAUG00000008133	Smarca1	100	96.300	ENSG00000102038	SMARCA1	100	96.300	Homo_sapiens
ENSMAUG00000008133	Smarca1	90	83.121	ENSAPOG00000016035	smarca5	96	84.382	Acanthochromis_polyacanthus
ENSMAUG00000008133	Smarca1	99	94.842	ENSAMEG00000015218	SMARCA1	98	94.842	Ailuropoda_melanoleuca
ENSMAUG00000008133	Smarca1	82	84.491	ENSACIG00000016982	smarca5	97	84.404	Amphilophus_citrinellus
ENSMAUG00000008133	Smarca1	90	83.121	ENSAOCG00000015578	smarca5	93	82.080	Amphiprion_ocellaris
ENSMAUG00000008133	Smarca1	90	83.121	ENSAPEG00000011117	smarca5	97	84.466	Amphiprion_percula
ENSMAUG00000008133	Smarca1	97	79.310	ENSATEG00000012894	smarca5	93	83.124	Anabas_testudineus
ENSMAUG00000008133	Smarca1	91	90.881	ENSAPLG00000013149	SMARCA1	97	91.268	Anas_platyrhynchos
ENSMAUG00000008133	Smarca1	97	88.427	ENSACAG00000011376	SMARCA1	93	90.583	Anolis_carolinensis
ENSMAUG00000008133	Smarca1	97	91.431	ENSANAG00000023098	SMARCA1	98	91.117	Aotus_nancymaae
ENSMAUG00000008133	Smarca1	94	80.711	ENSACLG00000025356	smarca5	93	82.734	Astatotilapia_calliptera
ENSMAUG00000008133	Smarca1	95	80.422	ENSAMXG00000005709	smarca5	92	83.473	Astyanax_mexicanus
ENSMAUG00000008133	Smarca1	87	88.126	ENSAMXG00000011227	smarca1	99	89.062	Astyanax_mexicanus
ENSMAUG00000008133	Smarca1	99	95.147	ENSBTAG00000002292	SMARCA1	100	95.433	Bos_taurus
ENSMAUG00000008133	Smarca1	92	63.303	WBGene00002169	isw-1	94	64.405	Caenorhabditis_elegans
ENSMAUG00000008133	Smarca1	97	96.397	ENSCJAG00000002868	SMARCA1	98	95.989	Callithrix_jacchus
ENSMAUG00000008133	Smarca1	99	86.705	ENSCAFG00000018673	SMARCA1	98	86.705	Canis_familiaris
ENSMAUG00000008133	Smarca1	99	95.962	ENSCAFG00020001751	SMARCA1	98	95.962	Canis_lupus_dingo
ENSMAUG00000008133	Smarca1	100	95.175	ENSCHIG00000009837	SMARCA1	100	95.459	Capra_hircus
ENSMAUG00000008133	Smarca1	95	96.364	ENSTSYG00000004240	SMARCA1	99	96.364	Carlito_syrichta
ENSMAUG00000008133	Smarca1	96	96.067	ENSCPOG00000013601	SMARCA1	100	94.402	Cavia_porcellus
ENSMAUG00000008133	Smarca1	97	93.281	ENSCCAG00000030817	SMARCA1	98	92.932	Cebus_capucinus
ENSMAUG00000008133	Smarca1	100	95.893	ENSCATG00000015921	SMARCA1	100	95.893	Cercocebus_atys
ENSMAUG00000008133	Smarca1	98	95.551	ENSCLAG00000002171	SMARCA1	100	95.256	Chinchilla_lanigera
ENSMAUG00000008133	Smarca1	99	95.865	ENSCSAG00000008460	SMARCA1	98	95.865	Chlorocebus_sabaeus
ENSMAUG00000008133	Smarca1	94	90.733	ENSCPBG00000001146	SMARCA1	92	91.095	Chrysemys_picta_bellii
ENSMAUG00000008133	Smarca1	95	71.386	ENSCING00000004110	swi/snf	95	73.244	Ciona_intestinalis
ENSMAUG00000008133	Smarca1	91	73.410	ENSCSAVG00000004620	-	100	73.719	Ciona_savignyi
ENSMAUG00000008133	Smarca1	99	95.769	ENSCANG00000007183	SMARCA1	98	96.180	Colobus_angolensis_palliatus
ENSMAUG00000008133	Smarca1	100	97.820	ENSCGRG00001010776	Smarca1	100	97.820	Cricetulus_griseus_chok1gshd
ENSMAUG00000008133	Smarca1	95	97.387	ENSCGRG00000015301	Smarca1	99	97.387	Cricetulus_griseus_crigri
ENSMAUG00000008133	Smarca1	92	82.708	ENSCSEG00000000328	smarca5	93	82.080	Cynoglossus_semilaevis
ENSMAUG00000008133	Smarca1	91	82.094	ENSCVAG00000008668	smarca5	97	83.879	Cyprinodon_variegatus
ENSMAUG00000008133	Smarca1	95	79.960	ENSDARG00000052348	smarca5	93	82.609	Danio_rerio
ENSMAUG00000008133	Smarca1	93	84.985	ENSDARG00000012776	smarca1	96	84.985	Danio_rerio
ENSMAUG00000008133	Smarca1	99	93.852	ENSDNOG00000004315	SMARCA1	100	93.852	Dasypus_novemcinctus
ENSMAUG00000008133	Smarca1	100	94.842	ENSDORG00000009270	Smarca1	100	94.651	Dipodomys_ordii
ENSMAUG00000008133	Smarca1	93	72.403	FBgn0011604	Iswi	94	73.566	Drosophila_melanogaster
ENSMAUG00000008133	Smarca1	79	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSMAUG00000008133	Smarca1	90	80.614	ENSEBUG00000001239	smarca5	95	80.538	Eptatretus_burgeri
ENSMAUG00000008133	Smarca1	93	92.323	ENSEASG00005008218	SMARCA1	97	92.938	Equus_asinus_asinus
ENSMAUG00000008133	Smarca1	99	95.014	ENSECAG00000012106	SMARCA1	98	95.302	Equus_caballus
ENSMAUG00000008133	Smarca1	77	96.689	ENSEEUG00000014927	SMARCA1	84	96.689	Erinaceus_europaeus
ENSMAUG00000008133	Smarca1	91	86.911	ENSELUG00000010515	smarca1	95	86.536	Esox_lucius
ENSMAUG00000008133	Smarca1	99	96.466	ENSFCAG00000018496	SMARCA1	98	96.466	Felis_catus
ENSMAUG00000008133	Smarca1	87	91.457	ENSFALG00000000209	SMARCA1	98	91.457	Ficedula_albicollis
ENSMAUG00000008133	Smarca1	95	96.493	ENSFDAG00000009818	SMARCA1	98	96.493	Fukomys_damarensis
ENSMAUG00000008133	Smarca1	91	82.513	ENSFHEG00000007687	smarca5	91	84.795	Fundulus_heteroclitus
ENSMAUG00000008133	Smarca1	94	88.867	ENSGALG00000008431	SMARCA1	96	90.501	Gallus_gallus
ENSMAUG00000008133	Smarca1	91	82.304	ENSGAFG00000017731	smarca5	93	82.183	Gambusia_affinis
ENSMAUG00000008133	Smarca1	91	91.983	ENSGAGG00000023575	SMARCA1	98	91.983	Gopherus_agassizii
ENSMAUG00000008133	Smarca1	71	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSMAUG00000008133	Smarca1	100	95.256	ENSHGLG00000003080	SMARCA1	100	95.256	Heterocephalus_glaber_female
ENSMAUG00000008133	Smarca1	94	95.075	ENSHGLG00100001102	SMARCA1	99	95.075	Heterocephalus_glaber_male
ENSMAUG00000008133	Smarca1	90	83.157	ENSHCOG00000005458	smarca5	93	82.389	Hippocampus_comes
ENSMAUG00000008133	Smarca1	94	80.750	ENSIPUG00000005229	SMARCA5	95	82.420	Ictalurus_punctatus
ENSMAUG00000008133	Smarca1	95	84.669	ENSIPUG00000016905	Smarca1	98	86.632	Ictalurus_punctatus
ENSMAUG00000008133	Smarca1	100	95.541	ENSSTOG00000014524	SMARCA1	100	95.541	Ictidomys_tridecemlineatus
ENSMAUG00000008133	Smarca1	100	95.129	ENSJJAG00000002593	Smarca1	100	95.033	Jaculus_jaculus
ENSMAUG00000008133	Smarca1	90	83.369	ENSKMAG00000003777	smarca5	93	82.595	Kryptolebias_marmoratus
ENSMAUG00000008133	Smarca1	91	82.218	ENSLBEG00000018112	smarca5	93	82.183	Labrus_bergylta
ENSMAUG00000008133	Smarca1	89	82.265	ENSLBEG00000013295	SMARCA1	100	84.071	Labrus_bergylta
ENSMAUG00000008133	Smarca1	95	87.726	ENSLACG00000016697	SMARCA1	96	88.673	Latimeria_chalumnae
ENSMAUG00000008133	Smarca1	92	88.095	ENSLOCG00000014591	smarca1	95	88.229	Lepisosteus_oculatus
ENSMAUG00000008133	Smarca1	94	95.626	ENSLAFG00000000896	SMARCA1	99	95.354	Loxodonta_africana
ENSMAUG00000008133	Smarca1	100	95.893	ENSMFAG00000002117	SMARCA1	100	95.893	Macaca_fascicularis
ENSMAUG00000008133	Smarca1	100	95.893	ENSMMUG00000008818	SMARCA1	100	95.893	Macaca_mulatta
ENSMAUG00000008133	Smarca1	100	95.893	ENSMNEG00000041768	SMARCA1	100	95.893	Macaca_nemestrina
ENSMAUG00000008133	Smarca1	99	95.769	ENSMLEG00000043198	SMARCA1	98	96.180	Mandrillus_leucophaeus
ENSMAUG00000008133	Smarca1	91	82.513	ENSMAMG00000014294	smarca5	93	82.492	Mastacembelus_armatus
ENSMAUG00000008133	Smarca1	94	80.711	ENSMZEG00005009369	smarca5	93	82.734	Maylandia_zebra
ENSMAUG00000008133	Smarca1	93	89.949	ENSMGAG00000007042	SMARCA1	97	90.132	Meleagris_gallopavo
ENSMAUG00000008133	Smarca1	97	96.105	ENSMICG00000015768	SMARCA1	98	95.511	Microcebus_murinus
ENSMAUG00000008133	Smarca1	100	97.913	ENSMOCG00000009464	Smarca1	100	97.913	Microtus_ochrogaster
ENSMAUG00000008133	Smarca1	91	80.439	ENSMMOG00000005547	smarca5	97	80.433	Mola_mola
ENSMAUG00000008133	Smarca1	97	88.016	ENSMODG00000013187	-	97	88.004	Monodelphis_domestica
ENSMAUG00000008133	Smarca1	92	81.649	ENSMALG00000002081	smarca5	97	80.855	Monopterus_albus
ENSMAUG00000008133	Smarca1	100	97.803	MGP_CAROLIEiJ_G0033034	Smarca1	100	97.803	Mus_caroli
ENSMAUG00000008133	Smarca1	100	97.708	ENSMUSG00000031099	Smarca1	100	97.708	Mus_musculus
ENSMAUG00000008133	Smarca1	100	97.803	MGP_PahariEiJ_G0031579	Smarca1	100	97.803	Mus_pahari
ENSMAUG00000008133	Smarca1	100	97.899	MGP_SPRETEiJ_G0034192	Smarca1	100	97.899	Mus_spretus
ENSMAUG00000008133	Smarca1	99	96.275	ENSMPUG00000017423	SMARCA1	92	96.275	Mustela_putorius_furo
ENSMAUG00000008133	Smarca1	98	93.592	ENSMLUG00000029614	SMARCA1	98	92.946	Myotis_lucifugus
ENSMAUG00000008133	Smarca1	100	97.059	ENSNGAG00000006492	Smarca1	100	97.059	Nannospalax_galili
ENSMAUG00000008133	Smarca1	91	82.723	ENSNBRG00000004463	smarca5	97	82.698	Neolamprologus_brichardi
ENSMAUG00000008133	Smarca1	97	95.910	ENSNLEG00000015179	SMARCA1	99	95.753	Nomascus_leucogenys
ENSMAUG00000008133	Smarca1	90	80.882	ENSMEUG00000008819	SMARCA1	99	81.118	Notamacropus_eugenii
ENSMAUG00000008133	Smarca1	98	95.455	ENSODEG00000012163	SMARCA1	100	94.972	Octodon_degus
ENSMAUG00000008133	Smarca1	94	80.812	ENSONIG00000009993	smarca5	93	82.837	Oreochromis_niloticus
ENSMAUG00000008133	Smarca1	91	92.413	ENSOANG00000002862	SMARCA1	98	92.413	Ornithorhynchus_anatinus
ENSMAUG00000008133	Smarca1	99	94.135	ENSOCUG00000001047	SMARCA1	98	92.788	Oryctolagus_cuniculus
ENSMAUG00000008133	Smarca1	90	82.945	ENSORLG00000021998	smarca5	93	82.183	Oryzias_latipes
ENSMAUG00000008133	Smarca1	90	83.051	ENSORLG00020017679	smarca5	93	82.286	Oryzias_latipes_hni
ENSMAUG00000008133	Smarca1	90	82.945	ENSORLG00015017210	smarca5	93	82.080	Oryzias_latipes_hsok
ENSMAUG00000008133	Smarca1	90	82.945	ENSOMEG00000000086	smarca5	93	82.080	Oryzias_melastigma
ENSMAUG00000008133	Smarca1	100	95.920	ENSOGAG00000004399	SMARCA1	100	95.920	Otolemur_garnettii
ENSMAUG00000008133	Smarca1	94	95.556	ENSOARG00000014638	SMARCA1	98	96.778	Ovis_aries
ENSMAUG00000008133	Smarca1	99	96.275	ENSPPAG00000034647	SMARCA1	98	96.275	Pan_paniscus
ENSMAUG00000008133	Smarca1	99	96.466	ENSPPRG00000008929	SMARCA1	98	96.466	Panthera_pardus
ENSMAUG00000008133	Smarca1	94	94.975	ENSPTIG00000000915	SMARCA1	96	94.970	Panthera_tigris_altaica
ENSMAUG00000008133	Smarca1	100	95.893	ENSPTRG00000049876	SMARCA1	100	95.893	Pan_troglodytes
ENSMAUG00000008133	Smarca1	99	96.275	ENSPANG00000003871	SMARCA1	98	96.275	Papio_anubis
ENSMAUG00000008133	Smarca1	91	87.093	ENSPKIG00000013411	smarca1	96	87.093	Paramormyrops_kingsleyae
ENSMAUG00000008133	Smarca1	94	90.394	ENSPSIG00000010101	SMARCA1	98	91.772	Pelodiscus_sinensis
ENSMAUG00000008133	Smarca1	100	98.861	ENSPEMG00000017503	Smarca1	100	98.861	Peromyscus_maniculatus_bairdii
ENSMAUG00000008133	Smarca1	97	88.813	ENSPCIG00000015460	SMARCA1	97	90.928	Phascolarctos_cinereus
ENSMAUG00000008133	Smarca1	90	83.157	ENSPFOG00000007649	smarca5	93	82.183	Poecilia_formosa
ENSMAUG00000008133	Smarca1	90	83.157	ENSPLAG00000003363	smarca5	93	82.183	Poecilia_latipinna
ENSMAUG00000008133	Smarca1	90	83.051	ENSPMEG00000019849	smarca5	94	81.781	Poecilia_mexicana
ENSMAUG00000008133	Smarca1	90	83.051	ENSPREG00000023250	smarca5	94	81.781	Poecilia_reticulata
ENSMAUG00000008133	Smarca1	97	93.431	ENSPPYG00000020703	SMARCA1	98	93.077	Pongo_abelii
ENSMAUG00000008133	Smarca1	78	90.909	ENSPCOG00000020722	SMARCA1	94	91.458	Propithecus_coquereli
ENSMAUG00000008133	Smarca1	92	95.918	ENSPVAG00000003805	SMARCA1	94	95.918	Pteropus_vampyrus
ENSMAUG00000008133	Smarca1	56	83.288	ENSPNYG00000012299	smarca5	92	82.133	Pundamilia_nyererei
ENSMAUG00000008133	Smarca1	99	97.308	ENSRNOG00000003762	Smarca1	98	97.308	Rattus_norvegicus
ENSMAUG00000008133	Smarca1	99	95.769	ENSRROG00000034167	SMARCA1	98	96.180	Rhinopithecus_roxellana
ENSMAUG00000008133	Smarca1	95	95.248	ENSSBOG00000020641	SMARCA1	98	96.881	Saimiri_boliviensis_boliviensis
ENSMAUG00000008133	Smarca1	91	85.609	ENSSHAG00000013518	SMARCA1	97	85.609	Sarcophilus_harrisii
ENSMAUG00000008133	Smarca1	93	80.943	ENSSFOG00015016794	smarca5	98	83.210	Scleropages_formosus
ENSMAUG00000008133	Smarca1	94	85.947	ENSSFOG00015009043	smarca1	96	87.067	Scleropages_formosus
ENSMAUG00000008133	Smarca1	91	82.267	ENSSMAG00000004801	smarca5	93	82.231	Scophthalmus_maximus
ENSMAUG00000008133	Smarca1	93	81.128	ENSSDUG00000020690	smarca5	94	81.633	Seriola_dumerili
ENSMAUG00000008133	Smarca1	93	81.128	ENSSLDG00000025190	smarca5	94	81.633	Seriola_lalandi_dorsalis
ENSMAUG00000008133	Smarca1	87	90.217	ENSSARG00000000842	SMARCA1	92	90.217	Sorex_araneus
ENSMAUG00000008133	Smarca1	95	89.394	ENSSPUG00000000590	SMARCA1	95	89.645	Sphenodon_punctatus
ENSMAUG00000008133	Smarca1	91	82.199	ENSSPAG00000002894	smarca5	94	84.382	Stegastes_partitus
ENSMAUG00000008133	Smarca1	99	94.732	ENSSSCG00000012649	SMARCA1	100	95.019	Sus_scrofa
ENSMAUG00000008133	Smarca1	91	90.671	ENSTGUG00000003899	-	97	91.060	Taeniopygia_guttata
ENSMAUG00000008133	Smarca1	91	82.408	ENSTRUG00000014094	smarca5	93	82.286	Takifugu_rubripes
ENSMAUG00000008133	Smarca1	90	82.696	ENSTNIG00000017717	smarca5	92	81.771	Tetraodon_nigroviridis
ENSMAUG00000008133	Smarca1	94	90.261	ENSTBEG00000014973	SMARCA1	100	90.261	Tupaia_belangeri
ENSMAUG00000008133	Smarca1	94	94.040	ENSTTRG00000006168	SMARCA1	100	94.040	Tursiops_truncatus
ENSMAUG00000008133	Smarca1	99	95.385	ENSUAMG00000020201	SMARCA1	98	95.385	Ursus_americanus
ENSMAUG00000008133	Smarca1	98	89.137	ENSUMAG00000004073	SMARCA1	99	96.659	Ursus_maritimus
ENSMAUG00000008133	Smarca1	74	98.413	ENSVPAG00000010492	-	80	98.413	Vicugna_pacos
ENSMAUG00000008133	Smarca1	94	96.436	ENSVVUG00000008878	SMARCA1	100	96.781	Vulpes_vulpes
ENSMAUG00000008133	Smarca1	92	88.266	ENSXETG00000001526	smarca1	98	88.127	Xenopus_tropicalis
ENSMAUG00000008133	Smarca1	91	82.199	ENSXCOG00000011170	smarca5	96	82.080	Xiphophorus_couchianus
ENSMAUG00000008133	Smarca1	91	82.199	ENSXMAG00000009678	smarca5	98	83.224	Xiphophorus_maculatus