EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAUG00000010262 (Gene tree)
Gene ID: 101838021
Gene Symbol: Smn1
Alias: SMN
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Mesocricetus_auratus
Status: putative
Strand: Minus strand
Length: 11656 bases
Position: chrKB708130.1:13254819-13266474
Accession: 101838021
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAUP00000008972	SMN	PF06003.12	4.9e-106	1	1
ENSMAUP00000008984	SMN	PF06003.12	3.3e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAUT00000012824	-	879	-	ENSMAUP00000008984	292 (aa)	-	-
ENSMAUT00000012819	-	120	-	ENSMAUP00000008979	39 (aa)	-	-
ENSMAUT00000012812	-	1187	XM_005065608	ENSMAUP00000008972	287 (aa)	XP_005065665	A0A1U7Q817

Gene Model

Click here to download ENSMAUG00000010262's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAUG00000010262's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAUG00000010262	Smn1	96	83.154	ENSG00000172062	SMN1	99	81.295	Homo_sapiens
ENSMAUG00000010262	Smn1	96	83.154	ENSG00000205571	SMN2	99	81.362	Homo_sapiens
ENSMAUG00000010262	Smn1	93	50.741	ENSAPOG00000011324	smn1	94	52.015	Acanthochromis_polyacanthus
ENSMAUG00000010262	Smn1	97	83.214	ENSAMEG00000003316	-	96	82.414	Ailuropoda_melanoleuca
ENSMAUG00000010262	Smn1	89	51.550	ENSACIG00000019772	-	97	50.189	Amphilophus_citrinellus
ENSMAUG00000010262	Smn1	93	51.111	ENSAOCG00000024444	smn1	94	52.536	Amphiprion_ocellaris
ENSMAUG00000010262	Smn1	93	51.481	ENSAPEG00000016504	smn1	94	52.899	Amphiprion_percula
ENSMAUG00000010262	Smn1	90	53.358	ENSATEG00000002182	smn1	79	53.008	Anabas_testudineus
ENSMAUG00000010262	Smn1	68	53.807	ENSAPLG00000010912	-	97	52.792	Anas_platyrhynchos
ENSMAUG00000010262	Smn1	94	54.480	ENSACAG00000010017	-	95	54.480	Anolis_carolinensis
ENSMAUG00000010262	Smn1	99	80.272	ENSANAG00000032133	-	99	76.190	Aotus_nancymaae
ENSMAUG00000010262	Smn1	90	51.866	ENSACLG00000007308	smn1	88	52.434	Astatotilapia_calliptera
ENSMAUG00000010262	Smn1	92	49.254	ENSAMXG00000013884	smn1	94	48.352	Astyanax_mexicanus
ENSMAUG00000010262	Smn1	97	79.643	ENSBTAG00000005743	SMN2	99	78.397	Bos_taurus
ENSMAUG00000010262	Smn1	96	81.071	ENSCJAG00000016290	-	99	79.181	Callithrix_jacchus
ENSMAUG00000010262	Smn1	100	83.448	ENSCAFG00000007812	SMN	100	83.448	Canis_familiaris
ENSMAUG00000010262	Smn1	99	83.681	ENSCAFG00020019229	-	93	83.681	Canis_lupus_dingo
ENSMAUG00000010262	Smn1	97	80.496	ENSCHIG00000015559	-	100	77.441	Capra_hircus
ENSMAUG00000010262	Smn1	99	83.391	ENSTSYG00000012058	-	99	83.391	Carlito_syrichta
ENSMAUG00000010262	Smn1	76	66.079	ENSCAPG00000011021	-	100	66.667	Cavia_aperea
ENSMAUG00000010262	Smn1	100	76.871	ENSCPOG00000036973	-	100	76.190	Cavia_porcellus
ENSMAUG00000010262	Smn1	99	76.792	ENSCPOG00000012328	-	99	76.109	Cavia_porcellus
ENSMAUG00000010262	Smn1	96	82.374	ENSCCAG00000018127	-	99	81.100	Cebus_capucinus
ENSMAUG00000010262	Smn1	96	83.154	ENSCATG00000037002	-	99	81.295	Cercocebus_atys
ENSMAUG00000010262	Smn1	100	74.497	ENSCLAG00000000284	-	100	74.497	Chinchilla_lanigera
ENSMAUG00000010262	Smn1	96	83.154	ENSCSAG00000015688	-	99	81.164	Chlorocebus_sabaeus
ENSMAUG00000010262	Smn1	86	71.429	ENSCHOG00000007346	-	100	70.635	Choloepus_hoffmanni
ENSMAUG00000010262	Smn1	98	56.207	ENSCPBG00000010968	-	99	55.390	Chrysemys_picta_bellii
ENSMAUG00000010262	Smn1	97	82.143	ENSCANG00000038242	-	99	83.516	Colobus_angolensis_palliatus
ENSMAUG00000010262	Smn1	95	76.786	ENSCANG00000033324	-	95	76.071	Colobus_angolensis_palliatus
ENSMAUG00000010262	Smn1	100	75.610	ENSCGRG00001016998	-	100	75.958	Cricetulus_griseus_chok1gshd
ENSMAUG00000010262	Smn1	100	96.516	ENSCGRG00001017959	-	100	96.516	Cricetulus_griseus_chok1gshd
ENSMAUG00000010262	Smn1	100	96.516	ENSCGRG00000007698	Smn1	100	96.516	Cricetulus_griseus_crigri
ENSMAUG00000010262	Smn1	92	47.163	ENSCSEG00000015227	smn1	58	53.892	Cynoglossus_semilaevis
ENSMAUG00000010262	Smn1	92	53.285	ENSCVAG00000007498	smn1	94	54.015	Cyprinodon_variegatus
ENSMAUG00000010262	Smn1	94	51.079	ENSDARG00000018494	smn1	95	51.812	Danio_rerio
ENSMAUG00000010262	Smn1	73	67.773	ENSDNOG00000045949	-	90	67.773	Dasypus_novemcinctus
ENSMAUG00000010262	Smn1	83	79.339	ENSDNOG00000007283	-	100	79.339	Dasypus_novemcinctus
ENSMAUG00000010262	Smn1	100	74.744	ENSDORG00000007082	Smn1	99	74.744	Dipodomys_ordii
ENSMAUG00000010262	Smn1	71	68.932	ENSETEG00000001406	-	93	67.539	Echinops_telfairi
ENSMAUG00000010262	Smn1	94	38.596	ENSEBUG00000011902	smn1	65	41.799	Eptatretus_burgeri
ENSMAUG00000010262	Smn1	95	73.571	ENSEASG00005018000	-	98	72.500	Equus_asinus_asinus
ENSMAUG00000010262	Smn1	100	82.131	ENSECAG00000015215	-	100	81.100	Equus_caballus
ENSMAUG00000010262	Smn1	86	77.291	ENSEEUG00000015777	-	100	76.892	Erinaceus_europaeus
ENSMAUG00000010262	Smn1	92	54.380	ENSELUG00000018067	smn1	94	52.747	Esox_lucius
ENSMAUG00000010262	Smn1	100	80.690	ENSFCAG00000028292	SMN	100	80.690	Felis_catus
ENSMAUG00000010262	Smn1	90	60.305	ENSFALG00000012320	-	91	59.387	Ficedula_albicollis
ENSMAUG00000010262	Smn1	100	76.510	ENSFDAG00000017683	-	100	76.510	Fukomys_damarensis
ENSMAUG00000010262	Smn1	61	54.444	ENSFHEG00000018508	smn1	96	52.000	Fundulus_heteroclitus
ENSMAUG00000010262	Smn1	96	46.403	ENSGMOG00000017279	smn1	96	42.754	Gadus_morhua
ENSMAUG00000010262	Smn1	93	58.364	ENSGALG00000002430	SMN	57	65.823	Gallus_gallus
ENSMAUG00000010262	Smn1	93	51.799	ENSGAFG00000009501	smn1	94	51.111	Gambusia_affinis
ENSMAUG00000010262	Smn1	93	50.185	ENSGACG00000010584	smn1	60	56.977	Gasterosteus_aculeatus
ENSMAUG00000010262	Smn1	98	57.388	ENSGAGG00000011374	-	99	56.357	Gopherus_agassizii
ENSMAUG00000010262	Smn1	51	45.333	ENSGAGG00000013639	-	57	47.826	Gopherus_agassizii
ENSMAUG00000010262	Smn1	69	82.412	ENSGGOG00000026704	-	99	80.660	Gorilla_gorilla
ENSMAUG00000010262	Smn1	94	71.898	ENSGGOG00000003872	-	100	72.924	Gorilla_gorilla
ENSMAUG00000010262	Smn1	92	49.813	ENSHBUG00000013987	smn1	91	53.101	Haplochromis_burtoni
ENSMAUG00000010262	Smn1	99	77.931	ENSHGLG00000001018	-	98	77.931	Heterocephalus_glaber_female
ENSMAUG00000010262	Smn1	100	74.403	ENSHGLG00000001905	-	100	74.403	Heterocephalus_glaber_female
ENSMAUG00000010262	Smn1	99	77.931	ENSHGLG00100011252	-	98	77.931	Heterocephalus_glaber_male
ENSMAUG00000010262	Smn1	96	74.733	ENSHGLG00100018676	-	100	74.733	Heterocephalus_glaber_male
ENSMAUG00000010262	Smn1	90	49.814	ENSHCOG00000017136	smn1	87	48.249	Hippocampus_comes
ENSMAUG00000010262	Smn1	92	51.292	ENSIPUG00000012580	smn1	55	51.149	Ictalurus_punctatus
ENSMAUG00000010262	Smn1	91	85.932	ENSSTOG00000012288	-	100	78.986	Ictidomys_tridecemlineatus
ENSMAUG00000010262	Smn1	60	63.006	ENSJJAG00000014853	-	89	63.218	Jaculus_jaculus
ENSMAUG00000010262	Smn1	93	52.381	ENSKMAG00000007239	smn1	96	51.908	Kryptolebias_marmoratus
ENSMAUG00000010262	Smn1	93	52.399	ENSLBEG00000022550	smn1	58	57.738	Labrus_bergylta
ENSMAUG00000010262	Smn1	93	36.232	ENSLACG00000009808	-	94	35.069	Latimeria_chalumnae
ENSMAUG00000010262	Smn1	92	53.184	ENSLOCG00000011339	smn1	94	52.941	Lepisosteus_oculatus
ENSMAUG00000010262	Smn1	100	79.592	ENSLAFG00000003425	-	96	79.592	Loxodonta_africana
ENSMAUG00000010262	Smn1	97	77.936	ENSMFAG00000008812	-	99	76.712	Macaca_fascicularis
ENSMAUG00000010262	Smn1	96	83.871	ENSMFAG00000031523	SMN1	99	83.516	Macaca_fascicularis
ENSMAUG00000010262	Smn1	97	77.224	ENSMMUG00000030594	-	99	76.027	Macaca_mulatta
ENSMAUG00000010262	Smn1	96	83.871	ENSMMUG00000020214	SMN1	99	83.516	Macaca_mulatta
ENSMAUG00000010262	Smn1	96	83.513	ENSMNEG00000035094	-	99	83.516	Macaca_nemestrina
ENSMAUG00000010262	Smn1	76	69.231	ENSMNEG00000036423	-	86	68.326	Macaca_nemestrina
ENSMAUG00000010262	Smn1	96	82.734	ENSMLEG00000041902	-	99	82.418	Mandrillus_leucophaeus
ENSMAUG00000010262	Smn1	92	50.916	ENSMAMG00000011034	smn1	94	51.852	Mastacembelus_armatus
ENSMAUG00000010262	Smn1	92	48.913	ENSMZEG00005013634	smn1	54	60.390	Maylandia_zebra
ENSMAUG00000010262	Smn1	68	53.571	ENSMGAG00000008889	-	95	42.051	Meleagris_gallopavo
ENSMAUG00000010262	Smn1	96	70.819	ENSMICG00000034708	-	99	81.818	Microcebus_murinus
ENSMAUG00000010262	Smn1	100	91.986	ENSMOCG00000017833	Smn1	100	91.986	Microtus_ochrogaster
ENSMAUG00000010262	Smn1	93	45.693	ENSMMOG00000005504	smn1	96	48.000	Mola_mola
ENSMAUG00000010262	Smn1	100	63.356	ENSMODG00000001436	-	99	63.356	Monodelphis_domestica
ENSMAUG00000010262	Smn1	92	51.481	ENSMALG00000008025	smn1	94	50.746	Monopterus_albus
ENSMAUG00000010262	Smn1	100	93.403	MGP_CAROLIEiJ_G0018836	Smn1	100	92.014	Mus_caroli
ENSMAUG00000010262	Smn1	100	93.403	ENSMUSG00000021645	Smn1	100	92.014	Mus_musculus
ENSMAUG00000010262	Smn1	100	90.244	MGP_PahariEiJ_G0015911	Smn1	100	91.638	Mus_pahari
ENSMAUG00000010262	Smn1	100	93.056	MGP_SPRETEiJ_G0019718	Smn1	100	91.667	Mus_spretus
ENSMAUG00000010262	Smn1	95	83.696	ENSMPUG00000014470	-	98	83.696	Mustela_putorius_furo
ENSMAUG00000010262	Smn1	97	82.353	ENSMLUG00000010603	-	96	80.936	Myotis_lucifugus
ENSMAUG00000010262	Smn1	100	86.159	ENSNGAG00000019833	Smn1	100	86.159	Nannospalax_galili
ENSMAUG00000010262	Smn1	92	48.913	ENSNBRG00000023000	smn1	56	59.375	Neolamprologus_brichardi
ENSMAUG00000010262	Smn1	99	81.164	ENSNLEG00000004454	-	99	80.645	Nomascus_leucogenys
ENSMAUG00000010262	Smn1	78	59.912	ENSMEUG00000011393	-	99	59.912	Notamacropus_eugenii
ENSMAUG00000010262	Smn1	86	78.261	ENSOPRG00000002015	-	100	77.866	Ochotona_princeps
ENSMAUG00000010262	Smn1	95	77.455	ENSODEG00000015976	-	97	77.455	Octodon_degus
ENSMAUG00000010262	Smn1	93	48.921	ENSONIG00000011799	smn1	95	52.000	Oreochromis_niloticus
ENSMAUG00000010262	Smn1	95	61.372	ENSOANG00000001626	-	96	62.455	Ornithorhynchus_anatinus
ENSMAUG00000010262	Smn1	100	79.038	ENSOCUG00000017097	-	99	79.038	Oryctolagus_cuniculus
ENSMAUG00000010262	Smn1	99	73.038	ENSOCUG00000025183	-	99	72.355	Oryctolagus_cuniculus
ENSMAUG00000010262	Smn1	99	74.830	ENSOCUG00000026649	-	99	77.551	Oryctolagus_cuniculus
ENSMAUG00000010262	Smn1	93	49.442	ENSORLG00000010552	smn1	94	49.814	Oryzias_latipes
ENSMAUG00000010262	Smn1	93	52.239	ENSORLG00020007936	smn1	65	56.471	Oryzias_latipes_hni
ENSMAUG00000010262	Smn1	93	49.071	ENSORLG00015022425	smn1	59	56.140	Oryzias_latipes_hsok
ENSMAUG00000010262	Smn1	93	48.689	ENSOMEG00000007824	smn1	94	50.186	Oryzias_melastigma
ENSMAUG00000010262	Smn1	91	72.862	ENSOGAG00000031414	-	100	69.792	Otolemur_garnettii
ENSMAUG00000010262	Smn1	95	78.182	ENSOARG00000005425	-	100	77.818	Ovis_aries
ENSMAUG00000010262	Smn1	96	82.796	ENSPPAG00000036640	-	99	81.004	Pan_paniscus
ENSMAUG00000010262	Smn1	100	81.034	ENSPPRG00000005575	-	100	81.034	Panthera_pardus
ENSMAUG00000010262	Smn1	100	81.100	ENSPTIG00000007745	-	100	80.069	Panthera_tigris_altaica
ENSMAUG00000010262	Smn1	96	81.915	ENSPTRG00000016955	-	95	85.333	Pan_troglodytes
ENSMAUG00000010262	Smn1	95	77.978	ENSPANG00000000253	-	98	77.083	Papio_anubis
ENSMAUG00000010262	Smn1	99	82.192	ENSPANG00000013601	-	99	82.418	Papio_anubis
ENSMAUG00000010262	Smn1	92	49.434	ENSPKIG00000011096	smn1	97	50.549	Paramormyrops_kingsleyae
ENSMAUG00000010262	Smn1	93	53.873	ENSPSIG00000014787	-	90	52.113	Pelodiscus_sinensis
ENSMAUG00000010262	Smn1	93	45.230	ENSPMGG00000012285	smn1	94	46.909	Periophthalmus_magnuspinnatus
ENSMAUG00000010262	Smn1	97	40.411	ENSPMAG00000005004	smn1	56	44.379	Petromyzon_marinus
ENSMAUG00000010262	Smn1	98	65.035	ENSPCIG00000025764	-	99	65.035	Phascolarctos_cinereus
ENSMAUG00000010262	Smn1	93	52.727	ENSPFOG00000007786	smn1	94	50.936	Poecilia_formosa
ENSMAUG00000010262	Smn1	93	53.091	ENSPLAG00000012071	smn1	94	51.311	Poecilia_latipinna
ENSMAUG00000010262	Smn1	93	52.727	ENSPMEG00000017085	smn1	94	50.936	Poecilia_mexicana
ENSMAUG00000010262	Smn1	93	53.455	ENSPREG00000005824	smn1	94	52.222	Poecilia_reticulata
ENSMAUG00000010262	Smn1	92	81.648	ENSPPYG00000015533	-	97	80.899	Pongo_abelii
ENSMAUG00000010262	Smn1	86	54.217	ENSPPYG00000019189	-	99	54.217	Pongo_abelii
ENSMAUG00000010262	Smn1	92	77.491	ENSPCAG00000004187	-	100	76.384	Procavia_capensis
ENSMAUG00000010262	Smn1	90	64.906	ENSPCOG00000022307	-	100	63.602	Propithecus_coquereli
ENSMAUG00000010262	Smn1	97	83.214	ENSPVAG00000005977	-	100	81.570	Pteropus_vampyrus
ENSMAUG00000010262	Smn1	92	48.913	ENSPNYG00000014148	smn1	56	59.375	Pundamilia_nyererei
ENSMAUG00000010262	Smn1	97	47.751	ENSPNAG00000014007	smn1	86	48.239	Pygocentrus_nattereri
ENSMAUG00000010262	Smn1	100	92.708	ENSRNOG00000018067	Smn1	100	92.708	Rattus_norvegicus
ENSMAUG00000010262	Smn1	94	70.221	ENSRBIG00000036775	-	92	70.221	Rhinopithecus_bieti
ENSMAUG00000010262	Smn1	97	82.562	ENSRBIG00000037052	-	99	83.516	Rhinopithecus_bieti
ENSMAUG00000010262	Smn1	98	69.123	ENSRROG00000031088	-	97	69.123	Rhinopithecus_roxellana
ENSMAUG00000010262	Smn1	97	82.562	ENSRROG00000039399	-	99	83.516	Rhinopithecus_roxellana
ENSMAUG00000010262	Smn1	84	75.600	ENSSBOG00000020112	-	87	75.200	Saimiri_boliviensis_boliviensis
ENSMAUG00000010262	Smn1	96	79.856	ENSSBOG00000011665	-	99	79.381	Saimiri_boliviensis_boliviensis
ENSMAUG00000010262	Smn1	100	64.041	ENSSHAG00000001499	-	100	62.681	Sarcophilus_harrisii
ENSMAUG00000010262	Smn1	93	51.825	ENSSFOG00015015507	smn1	94	51.460	Scleropages_formosus
ENSMAUG00000010262	Smn1	93	48.736	ENSSMAG00000007922	smn1	94	50.909	Scophthalmus_maximus
ENSMAUG00000010262	Smn1	93	51.095	ENSSDUG00000018533	smn1	94	52.222	Seriola_dumerili
ENSMAUG00000010262	Smn1	93	51.460	ENSSLDG00000021135	smn1	94	52.593	Seriola_lalandi_dorsalis
ENSMAUG00000010262	Smn1	96	59.498	ENSSPUG00000000373	-	93	60.300	Sphenodon_punctatus
ENSMAUG00000010262	Smn1	93	50.909	ENSSPAG00000004345	smn1	94	52.174	Stegastes_partitus
ENSMAUG00000010262	Smn1	74	53.302	ENSSSCG00000033865	-	93	54.545	Sus_scrofa
ENSMAUG00000010262	Smn1	97	80.714	ENSSSCG00000016970	-	100	80.887	Sus_scrofa
ENSMAUG00000010262	Smn1	97	60.993	ENSSSCG00000029127	-	100	58.042	Sus_scrofa
ENSMAUG00000010262	Smn1	94	57.500	ENSTGUG00000001548	-	64	61.798	Taeniopygia_guttata
ENSMAUG00000010262	Smn1	93	47.253	ENSTRUG00000000736	smn	95	47.761	Takifugu_rubripes
ENSMAUG00000010262	Smn1	93	49.462	ENSTNIG00000009892	smn1	95	49.822	Tetraodon_nigroviridis
ENSMAUG00000010262	Smn1	66	83.333	ENSTBEG00000002399	-	93	83.333	Tupaia_belangeri
ENSMAUG00000010262	Smn1	97	80.000	ENSTTRG00000005080	-	100	78.305	Tursiops_truncatus
ENSMAUG00000010262	Smn1	63	82.609	ENSUAMG00000024947	-	70	82.292	Ursus_americanus
ENSMAUG00000010262	Smn1	97	83.333	ENSUMAG00000007842	-	74	83.103	Ursus_maritimus
ENSMAUG00000010262	Smn1	91	71.212	ENSVPAG00000009887	-	100	69.784	Vicugna_pacos
ENSMAUG00000010262	Smn1	100	83.448	ENSVVUG00000006934	-	100	83.448	Vulpes_vulpes
ENSMAUG00000010262	Smn1	95	53.737	ENSXETG00000018189	smn2	96	53.287	Xenopus_tropicalis
ENSMAUG00000010262	Smn1	100	36.513	ENSXETG00000004912	-	79	63.333	Xenopus_tropicalis
ENSMAUG00000010262	Smn1	93	52.143	ENSXMAG00000001521	smn1	95	52.899	Xiphophorus_maculatus