EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAUG00000011398 (Gene tree)
Gene ID: 101823609
Gene Symbol: Upf1
Alias: B430202H16Rik|PNORF-1|Rent1
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Mesocricetus_auratus
Status: putative
Strand: Plus strand
Length: 11661 bases
Position: chrKB708341.1:760214-771874
Accession: 101823609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAUP00000010607	UPF1_Zn_bind	PF09416.10	5.5e-75	1	1
ENSMAUP00000010607	ResIII	PF04851.15	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAUT00000014480	-	3327	XM_013125274	ENSMAUP00000010607	1108 (aa)	-	-

Gene Model

Click here to download ENSMAUG00000011398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAUG00000011398's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAUG00000011398	Upf1	97	97.403	ENSG00000005007	UPF1	95	97.403	Homo_sapiens
ENSMAUG00000011398	Upf1	95	93.352	ENSAPOG00000010916	-	96	92.164	Acanthochromis_polyacanthus
ENSMAUG00000011398	Upf1	95	92.140	ENSAPOG00000023773	upf1	95	92.221	Acanthochromis_polyacanthus
ENSMAUG00000011398	Upf1	97	97.217	ENSAMEG00000011474	UPF1	96	97.217	Ailuropoda_melanoleuca
ENSMAUG00000011398	Upf1	94	93.340	ENSACIG00000010985	-	100	93.436	Amphilophus_citrinellus
ENSMAUG00000011398	Upf1	95	91.769	ENSACIG00000019949	upf1	95	92.330	Amphilophus_citrinellus
ENSMAUG00000011398	Upf1	95	91.627	ENSAOCG00000018519	upf1	95	92.221	Amphiprion_ocellaris
ENSMAUG00000011398	Upf1	95	93.257	ENSAOCG00000006352	-	100	90.848	Amphiprion_ocellaris
ENSMAUG00000011398	Upf1	95	93.257	ENSAPEG00000006292	-	100	90.848	Amphiprion_percula
ENSMAUG00000011398	Upf1	95	91.627	ENSAPEG00000016344	upf1	95	92.221	Amphiprion_percula
ENSMAUG00000011398	Upf1	95	89.658	ENSATEG00000017867	upf1	95	91.581	Anabas_testudineus
ENSMAUG00000011398	Upf1	95	93.352	ENSATEG00000016606	-	95	93.447	Anabas_testudineus
ENSMAUG00000011398	Upf1	95	97.621	ENSAPLG00000009175	UPF1	99	97.621	Anas_platyrhynchos
ENSMAUG00000011398	Upf1	96	96.536	ENSANAG00000024107	UPF1	97	96.536	Aotus_nancymaae
ENSMAUG00000011398	Upf1	95	91.580	ENSACLG00000007181	upf1	95	92.140	Astatotilapia_calliptera
ENSMAUG00000011398	Upf1	95	93.156	ENSACLG00000022630	-	95	93.156	Astatotilapia_calliptera
ENSMAUG00000011398	Upf1	95	93.637	ENSAMXG00000042187	upf1	95	94.207	Astyanax_mexicanus
ENSMAUG00000011398	Upf1	97	97.495	ENSBTAG00000020922	UPF1	95	97.495	Bos_taurus
ENSMAUG00000011398	Upf1	83	53.055	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSMAUG00000011398	Upf1	97	97.403	ENSCJAG00000019627	UPF1	95	97.403	Callithrix_jacchus
ENSMAUG00000011398	Upf1	97	97.495	ENSCAFG00000014578	UPF1	95	97.495	Canis_familiaris
ENSMAUG00000011398	Upf1	97	96.475	ENSCAFG00020012347	UPF1	95	96.475	Canis_lupus_dingo
ENSMAUG00000011398	Upf1	97	97.403	ENSCHIG00000011018	UPF1	95	97.403	Capra_hircus
ENSMAUG00000011398	Upf1	95	98.859	ENSTSYG00000008877	UPF1	98	98.859	Carlito_syrichta
ENSMAUG00000011398	Upf1	95	98.194	ENSCAPG00000005758	UPF1	95	98.194	Cavia_aperea
ENSMAUG00000011398	Upf1	95	98.187	ENSCPOG00000025463	UPF1	94	98.187	Cavia_porcellus
ENSMAUG00000011398	Upf1	97	97.403	ENSCCAG00000032175	UPF1	96	97.403	Cebus_capucinus
ENSMAUG00000011398	Upf1	95	99.046	ENSCATG00000040306	UPF1	98	99.046	Cercocebus_atys
ENSMAUG00000011398	Upf1	98	97.056	ENSCLAG00000004037	UPF1	100	99.240	Chinchilla_lanigera
ENSMAUG00000011398	Upf1	97	96.382	ENSCSAG00000005276	UPF1	95	96.382	Chlorocebus_sabaeus
ENSMAUG00000011398	Upf1	98	94.505	ENSCPBG00000012513	UPF1	96	94.505	Chrysemys_picta_bellii
ENSMAUG00000011398	Upf1	70	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSMAUG00000011398	Upf1	94	73.415	ENSCSAVG00000006533	-	94	73.415	Ciona_savignyi
ENSMAUG00000011398	Upf1	97	97.575	ENSCANG00000029819	UPF1	99	97.575	Colobus_angolensis_palliatus
ENSMAUG00000011398	Upf1	97	97.310	ENSCGRG00001021067	Upf1	95	97.310	Cricetulus_griseus_chok1gshd
ENSMAUG00000011398	Upf1	96	99.154	ENSCGRG00000013480	Upf1	99	99.154	Cricetulus_griseus_crigri
ENSMAUG00000011398	Upf1	97	85.728	ENSCSEG00000017239	upf1	96	85.914	Cynoglossus_semilaevis
ENSMAUG00000011398	Upf1	95	93.346	ENSCSEG00000016159	-	95	93.346	Cynoglossus_semilaevis
ENSMAUG00000011398	Upf1	95	92.972	ENSCVAG00000010561	upf1	95	92.972	Cyprinodon_variegatus
ENSMAUG00000011398	Upf1	95	93.447	ENSDARG00000016302	upf1	95	94.017	Danio_rerio
ENSMAUG00000011398	Upf1	95	96.771	ENSDORG00000009984	Upf1	98	94.139	Dipodomys_ordii
ENSMAUG00000011398	Upf1	80	73.296	FBgn0030354	Upf1	80	69.239	Drosophila_melanogaster
ENSMAUG00000011398	Upf1	50	89.091	ENSEBUG00000010069	upf1	89	89.091	Eptatretus_burgeri
ENSMAUG00000011398	Upf1	97	96.475	ENSEASG00005006549	UPF1	95	96.475	Equus_asinus_asinus
ENSMAUG00000011398	Upf1	97	96.475	ENSECAG00000010639	UPF1	95	96.475	Equus_caballus
ENSMAUG00000011398	Upf1	95	91.974	ENSELUG00000012916	-	95	92.547	Esox_lucius
ENSMAUG00000011398	Upf1	95	91.210	ENSELUG00000020917	upf1	95	91.493	Esox_lucius
ENSMAUG00000011398	Upf1	97	97.403	ENSFCAG00000009757	UPF1	95	97.403	Felis_catus
ENSMAUG00000011398	Upf1	95	96.777	ENSFALG00000009312	UPF1	96	96.777	Ficedula_albicollis
ENSMAUG00000011398	Upf1	97	97.222	ENSFDAG00000014816	UPF1	100	99.144	Fukomys_damarensis
ENSMAUG00000011398	Upf1	95	89.454	ENSFHEG00000006428	upf1	94	89.454	Fundulus_heteroclitus
ENSMAUG00000011398	Upf1	86	92.740	ENSFHEG00000016276	-	96	92.922	Fundulus_heteroclitus
ENSMAUG00000011398	Upf1	95	92.877	ENSGMOG00000007541	upf1	95	93.827	Gadus_morhua
ENSMAUG00000011398	Upf1	98	94.766	ENSGALG00000003220	UPF1	97	94.766	Gallus_gallus
ENSMAUG00000011398	Upf1	95	92.395	ENSGAFG00000004831	upf1	95	92.871	Gambusia_affinis
ENSMAUG00000011398	Upf1	63	93.475	ENSGAFG00000015443	-	88	91.209	Gambusia_affinis
ENSMAUG00000011398	Upf1	95	97.241	ENSGAGG00000022217	UPF1	96	94.674	Gopherus_agassizii
ENSMAUG00000011398	Upf1	95	98.004	ENSGGOG00000002608	UPF1	99	98.004	Gorilla_gorilla
ENSMAUG00000011398	Upf1	84	100.000	ENSHBUG00000008939	upf1	91	100.000	Haplochromis_burtoni
ENSMAUG00000011398	Upf1	82	85.057	ENSHBUG00000014694	upf1	90	85.057	Haplochromis_burtoni
ENSMAUG00000011398	Upf1	97	97.217	ENSHGLG00000010900	UPF1	95	97.217	Heterocephalus_glaber_female
ENSMAUG00000011398	Upf1	95	97.243	ENSHGLG00100005904	UPF1	97	97.243	Heterocephalus_glaber_male
ENSMAUG00000011398	Upf1	95	92.300	ENSHCOG00000008918	upf1	100	92.440	Hippocampus_comes
ENSMAUG00000011398	Upf1	95	94.112	ENSIPUG00000005108	UPF1	95	94.587	Ictalurus_punctatus
ENSMAUG00000011398	Upf1	97	97.403	ENSSTOG00000009196	UPF1	95	97.403	Ictidomys_tridecemlineatus
ENSMAUG00000011398	Upf1	98	97.153	ENSJJAG00000023151	Upf1	97	97.153	Jaculus_jaculus
ENSMAUG00000011398	Upf1	95	93.257	ENSKMAG00000004962	upf1	95	93.257	Kryptolebias_marmoratus
ENSMAUG00000011398	Upf1	95	93.162	ENSLBEG00000027848	-	95	93.257	Labrus_bergylta
ENSMAUG00000011398	Upf1	95	90.253	ENSLBEG00000014862	upf1	95	91.471	Labrus_bergylta
ENSMAUG00000011398	Upf1	63	96.413	ENSLACG00000008482	UPF1	100	96.413	Latimeria_chalumnae
ENSMAUG00000011398	Upf1	95	95.627	ENSLOCG00000002072	upf1	95	95.627	Lepisosteus_oculatus
ENSMAUG00000011398	Upf1	97	97.026	ENSLAFG00000014963	UPF1	97	95.978	Loxodonta_africana
ENSMAUG00000011398	Upf1	97	97.403	ENSMFAG00000037748	UPF1	96	97.403	Macaca_fascicularis
ENSMAUG00000011398	Upf1	97	97.403	ENSMMUG00000023286	UPF1	95	97.403	Macaca_mulatta
ENSMAUG00000011398	Upf1	97	97.403	ENSMNEG00000000046	UPF1	96	97.403	Macaca_nemestrina
ENSMAUG00000011398	Upf1	95	99.049	ENSMLEG00000028404	UPF1	100	99.049	Mandrillus_leucophaeus
ENSMAUG00000011398	Upf1	95	92.593	ENSMAMG00000006231	-	95	93.162	Mastacembelus_armatus
ENSMAUG00000011398	Upf1	95	90.552	ENSMAMG00000006229	upf1	95	91.674	Mastacembelus_armatus
ENSMAUG00000011398	Upf1	95	93.156	ENSMZEG00005016386	-	95	93.156	Maylandia_zebra
ENSMAUG00000011398	Upf1	95	90.561	ENSMZEG00005003489	upf1	95	91.823	Maylandia_zebra
ENSMAUG00000011398	Upf1	95	97.148	ENSMGAG00000004745	UPF1	100	97.148	Meleagris_gallopavo
ENSMAUG00000011398	Upf1	97	96.475	ENSMICG00000001659	UPF1	95	96.475	Microcebus_murinus
ENSMAUG00000011398	Upf1	97	98.237	ENSMOCG00000005699	Upf1	95	98.237	Microtus_ochrogaster
ENSMAUG00000011398	Upf1	95	91.698	ENSMMOG00000007881	upf1	94	92.183	Mola_mola
ENSMAUG00000011398	Upf1	95	91.263	ENSMMOG00000007537	-	99	91.358	Mola_mola
ENSMAUG00000011398	Upf1	98	95.956	ENSMODG00000003689	UPF1	95	97.431	Monodelphis_domestica
ENSMAUG00000011398	Upf1	95	92.060	ENSMALG00000018100	-	95	92.155	Monopterus_albus
ENSMAUG00000011398	Upf1	95	91.627	ENSMALG00000000144	upf1	95	91.912	Monopterus_albus
ENSMAUG00000011398	Upf1	97	98.145	MGP_CAROLIEiJ_G0031142	Upf1	95	98.145	Mus_caroli
ENSMAUG00000011398	Upf1	97	98.145	ENSMUSG00000058301	Upf1	95	98.145	Mus_musculus
ENSMAUG00000011398	Upf1	97	98.145	MGP_PahariEiJ_G0021607	Upf1	95	98.145	Mus_pahari
ENSMAUG00000011398	Upf1	97	98.145	MGP_SPRETEiJ_G0032260	Upf1	95	98.145	Mus_spretus
ENSMAUG00000011398	Upf1	97	96.475	ENSMPUG00000015516	UPF1	95	96.475	Mustela_putorius_furo
ENSMAUG00000011398	Upf1	97	96.289	ENSMLUG00000012122	UPF1	95	96.289	Myotis_lucifugus
ENSMAUG00000011398	Upf1	97	97.959	ENSNGAG00000024107	Upf1	95	97.959	Nannospalax_galili
ENSMAUG00000011398	Upf1	94	92.308	ENSNBRG00000022069	-	100	92.308	Neolamprologus_brichardi
ENSMAUG00000011398	Upf1	95	89.782	ENSNBRG00000000670	upf1	95	90.341	Neolamprologus_brichardi
ENSMAUG00000011398	Upf1	95	93.251	ENSNLEG00000006062	UPF1	100	93.251	Nomascus_leucogenys
ENSMAUG00000011398	Upf1	78	93.333	ENSMEUG00000014146	-	78	93.333	Notamacropus_eugenii
ENSMAUG00000011398	Upf1	95	90.304	ENSOPRG00000014018	UPF1	100	90.304	Ochotona_princeps
ENSMAUG00000011398	Upf1	95	99.144	ENSODEG00000012426	UPF1	95	99.144	Octodon_degus
ENSMAUG00000011398	Upf1	95	93.251	ENSONIG00000012729	-	95	93.251	Oreochromis_niloticus
ENSMAUG00000011398	Upf1	95	91.028	ENSONIG00000010452	upf1	95	92.293	Oreochromis_niloticus
ENSMAUG00000011398	Upf1	97	96.289	ENSOANG00000004568	UPF1	95	96.289	Ornithorhynchus_anatinus
ENSMAUG00000011398	Upf1	95	93.067	ENSORLG00000008453	upf1	95	93.067	Oryzias_latipes
ENSMAUG00000011398	Upf1	95	93.067	ENSORLG00020014758	upf1	95	93.067	Oryzias_latipes_hni
ENSMAUG00000011398	Upf1	95	93.067	ENSORLG00015010165	upf1	100	89.210	Oryzias_latipes_hsok
ENSMAUG00000011398	Upf1	95	93.162	ENSOMEG00000003665	upf1	95	93.162	Oryzias_melastigma
ENSMAUG00000011398	Upf1	97	96.475	ENSOGAG00000012866	UPF1	95	96.475	Otolemur_garnettii
ENSMAUG00000011398	Upf1	92	98.817	ENSOARG00000010739	UPF1	93	98.817	Ovis_aries
ENSMAUG00000011398	Upf1	97	96.774	ENSPPAG00000043884	UPF1	99	96.774	Pan_paniscus
ENSMAUG00000011398	Upf1	97	97.403	ENSPPRG00000023470	UPF1	95	97.403	Panthera_pardus
ENSMAUG00000011398	Upf1	95	96.194	ENSPTIG00000010159	UPF1	99	96.194	Panthera_tigris_altaica
ENSMAUG00000011398	Upf1	97	97.403	ENSPTRG00000010721	UPF1	96	97.403	Pan_troglodytes
ENSMAUG00000011398	Upf1	97	97.403	ENSPANG00000008847	UPF1	96	97.403	Papio_anubis
ENSMAUG00000011398	Upf1	86	95.816	ENSPKIG00000006069	upf1	91	95.816	Paramormyrops_kingsleyae
ENSMAUG00000011398	Upf1	69	97.255	ENSPSIG00000009491	UPF1	100	97.255	Pelodiscus_sinensis
ENSMAUG00000011398	Upf1	95	90.047	ENSPMGG00000017327	upf1	95	90.255	Periophthalmus_magnuspinnatus
ENSMAUG00000011398	Upf1	97	98.330	ENSPEMG00000001085	Upf1	95	98.330	Peromyscus_maniculatus_bairdii
ENSMAUG00000011398	Upf1	95	89.068	ENSPMAG00000001206	upf1	94	89.068	Petromyzon_marinus
ENSMAUG00000011398	Upf1	98	95.037	ENSPCIG00000006156	UPF1	96	95.037	Phascolarctos_cinereus
ENSMAUG00000011398	Upf1	95	92.490	ENSPLAG00000016232	-	95	92.966	Poecilia_latipinna
ENSMAUG00000011398	Upf1	95	90.301	ENSPLAG00000018155	-	95	90.301	Poecilia_latipinna
ENSMAUG00000011398	Upf1	95	92.586	ENSPMEG00000016319	-	95	93.061	Poecilia_mexicana
ENSMAUG00000011398	Upf1	95	90.806	ENSPMEG00000011443	-	95	90.806	Poecilia_mexicana
ENSMAUG00000011398	Upf1	95	90.704	ENSPREG00000009940	upf1	94	90.704	Poecilia_reticulata
ENSMAUG00000011398	Upf1	95	92.300	ENSPREG00000011247	-	95	92.776	Poecilia_reticulata
ENSMAUG00000011398	Upf1	97	92.208	ENSPPYG00000009752	UPF1	95	92.208	Pongo_abelii
ENSMAUG00000011398	Upf1	66	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSMAUG00000011398	Upf1	97	97.588	ENSPCOG00000023813	UPF1	95	97.588	Propithecus_coquereli
ENSMAUG00000011398	Upf1	66	100.000	ENSPVAG00000003183	UPF1	63	100.000	Pteropus_vampyrus
ENSMAUG00000011398	Upf1	95	93.156	ENSPNYG00000016731	-	96	91.877	Pundamilia_nyererei
ENSMAUG00000011398	Upf1	95	90.561	ENSPNYG00000003694	upf1	95	91.823	Pundamilia_nyererei
ENSMAUG00000011398	Upf1	95	93.637	ENSPNAG00000025614	upf1	95	94.207	Pygocentrus_nattereri
ENSMAUG00000011398	Upf1	97	98.237	ENSRNOG00000020134	Upf1	95	98.237	Rattus_norvegicus
ENSMAUG00000011398	Upf1	95	96.673	ENSRBIG00000013894	UPF1	98	97.619	Rhinopithecus_bieti
ENSMAUG00000011398	Upf1	95	99.049	ENSRROG00000040935	UPF1	97	99.049	Rhinopithecus_roxellana
ENSMAUG00000011398	Upf1	76	55.012	YMR080C	NAM7	87	55.012	Saccharomyces_cerevisiae
ENSMAUG00000011398	Upf1	99	95.640	ENSSBOG00000023632	UPF1	99	95.640	Saimiri_boliviensis_boliviensis
ENSMAUG00000011398	Upf1	95	98.291	ENSSHAG00000010499	UPF1	100	98.291	Sarcophilus_harrisii
ENSMAUG00000011398	Upf1	95	95.913	ENSSFOG00015021095	upf1	99	95.817	Scleropages_formosus
ENSMAUG00000011398	Upf1	95	89.878	ENSSMAG00000005055	upf1	95	90.730	Scophthalmus_maximus
ENSMAUG00000011398	Upf1	95	93.257	ENSSMAG00000021018	-	95	93.352	Scophthalmus_maximus
ENSMAUG00000011398	Upf1	95	93.542	ENSSDUG00000009629	-	95	93.637	Seriola_dumerili
ENSMAUG00000011398	Upf1	95	90.739	ENSSDUG00000013320	upf1	95	91.674	Seriola_dumerili
ENSMAUG00000011398	Upf1	95	91.596	ENSSLDG00000020868	upf1	95	91.989	Seriola_lalandi_dorsalis
ENSMAUG00000011398	Upf1	95	93.542	ENSSLDG00000006878	-	95	93.637	Seriola_lalandi_dorsalis
ENSMAUG00000011398	Upf1	95	97.146	ENSSPUG00000010538	UPF1	94	97.146	Sphenodon_punctatus
ENSMAUG00000011398	Upf1	95	93.346	ENSSPAG00000011521	-	96	92.063	Stegastes_partitus
ENSMAUG00000011398	Upf1	95	89.829	ENSSPAG00000000003	upf1	95	89.962	Stegastes_partitus
ENSMAUG00000011398	Upf1	97	97.403	ENSSSCG00000039301	UPF1	99	98.097	Sus_scrofa
ENSMAUG00000011398	Upf1	77	90.962	ENSTGUG00000001057	UPF1	94	92.779	Taeniopygia_guttata
ENSMAUG00000011398	Upf1	95	92.395	ENSTRUG00000005131	-	95	92.490	Takifugu_rubripes
ENSMAUG00000011398	Upf1	95	91.532	ENSTRUG00000000150	upf1	95	91.532	Takifugu_rubripes
ENSMAUG00000011398	Upf1	97	92.910	ENSTTRG00000011544	UPF1	95	92.579	Tursiops_truncatus
ENSMAUG00000011398	Upf1	97	96.382	ENSUAMG00000007093	UPF1	95	96.382	Ursus_americanus
ENSMAUG00000011398	Upf1	95	99.144	ENSUMAG00000006652	UPF1	98	99.144	Ursus_maritimus
ENSMAUG00000011398	Upf1	97	96.475	ENSVVUG00000007797	UPF1	95	96.475	Vulpes_vulpes
ENSMAUG00000011398	Upf1	96	82.463	ENSXETG00000013602	upf1	94	82.463	Xenopus_tropicalis
ENSMAUG00000011398	Upf1	94	92.706	ENSXCOG00000005764	-	100	93.186	Xiphophorus_couchianus
ENSMAUG00000011398	Upf1	93	89.168	ENSXCOG00000015275	-	92	89.168	Xiphophorus_couchianus
ENSMAUG00000011398	Upf1	97	89.449	ENSXMAG00000001703	-	96	89.449	Xiphophorus_maculatus
ENSMAUG00000011398	Upf1	95	92.395	ENSXMAG00000002540	-	95	92.871	Xiphophorus_maculatus