EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAUG00000011683 (Gene tree)
Gene ID: 101832694
Gene Symbol: Apobec3
Alias: CEM15|Gm20117|Rfv-3|Rfv3
Full Name: DNA dC->dU-editing enzyme APOBEC3-like
Gene Type: protein_coding
Species: Mesocricetus_auratus
Status: putative
Strand: Plus strand
Length: 13566 bases
Position: chrKB708136.1:2161475-2175040
Accession: 101832694
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAUP00000010974	APOBEC_N	PF08210.11	1.9e-90	1	2
ENSMAUP00000010974	APOBEC_N	PF08210.11	1.9e-90	2	2
ENSMAUP00000010970	APOBEC_N	PF08210.11	2.2e-90	1	2
ENSMAUP00000010970	APOBEC_N	PF08210.11	2.2e-90	2	2
ENSMAUP00000010974	APOBEC_C	PF05240.14	2.4e-58	1	2
ENSMAUP00000010974	APOBEC_C	PF05240.14	2.4e-58	2	2
ENSMAUP00000010970	APOBEC_C	PF05240.14	2.6e-58	1	2
ENSMAUP00000010970	APOBEC_C	PF05240.14	2.6e-58	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAUT00000014848	-	1242	XM_013111124	ENSMAUP00000010970	413 (aa)	XP_012966578	-
ENSMAUT00000014852	-	1209	-	ENSMAUP00000010974	402 (aa)	-	-

Gene Model

Click here to download ENSMAUG00000011683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAUG00000011683's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAUG00000011683	Apobec3	53	34.000	ENSMAUG00000022167	Apobec1	51	34.000
ENSMAUG00000011683	Apobec3	82	38.251	ENSMAUG00000012229	Aicda	90	38.251
ENSMAUG00000011683	Apobec3	79	35.795	ENSMAUG00000011016	Apobec2	77	35.795

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAUG00000011683	Apobec3	72	47.568	ENSG00000100298	APOBEC3H	100	48.128	Homo_sapiens
ENSMAUG00000011683	Apobec3	92	42.793	ENSAMEG00000010818	-	98	42.793	Ailuropoda_melanoleuca
ENSMAUG00000011683	Apobec3	90	50.000	ENSANAG00000025410	APOBEC3H	94	50.481	Aotus_nancymaae
ENSMAUG00000011683	Apobec3	94	45.103	ENSBTAG00000007755	APOBEC3H	99	45.103	Bos_taurus
ENSMAUG00000011683	Apobec3	86	48.108	ENSCJAG00000012524	APOBEC3H	91	49.645	Callithrix_jacchus
ENSMAUG00000011683	Apobec3	91	49.231	ENSCAFG00000001361	APOBEC3Z3	98	49.231	Canis_familiaris
ENSMAUG00000011683	Apobec3	89	50.282	ENSCAFG00020002584	-	93	50.282	Canis_lupus_dingo
ENSMAUG00000011683	Apobec3	87	50.543	ENSCHIG00000026580	-	98	45.867	Capra_hircus
ENSMAUG00000011683	Apobec3	84	49.153	ENSTSYG00000032894	-	100	49.153	Carlito_syrichta
ENSMAUG00000011683	Apobec3	98	49.272	ENSCPOG00000009257	-	96	49.272	Cavia_porcellus
ENSMAUG00000011683	Apobec3	87	50.000	ENSCCAG00000008525	APOBEC3H	95	50.490	Cebus_capucinus
ENSMAUG00000011683	Apobec3	86	51.351	ENSCATG00000030302	APOBEC3H	100	51.351	Cercocebus_atys
ENSMAUG00000011683	Apobec3	86	50.505	ENSCLAG00000016615	-	96	50.505	Chinchilla_lanigera
ENSMAUG00000011683	Apobec3	88	51.961	ENSCSAG00000006371	APOBEC3H	95	51.961	Chlorocebus_sabaeus
ENSMAUG00000011683	Apobec3	100	89.130	ENSCGRG00001022976	Apobec3	100	89.130	Cricetulus_griseus_chok1gshd
ENSMAUG00000011683	Apobec3	100	89.130	ENSCGRG00000005621	Apobec3	100	89.130	Cricetulus_griseus_crigri
ENSMAUG00000011683	Apobec3	97	52.525	ENSDORG00000027271	-	100	55.102	Dipodomys_ordii
ENSMAUG00000011683	Apobec3	93	50.000	ENSECAG00000007726	APOBEC3H	98	48.485	Equus_caballus
ENSMAUG00000011683	Apobec3	91	52.821	ENSFCAG00000005251	APOBEC3Z3	98	52.821	Felis_catus
ENSMAUG00000011683	Apobec3	87	49.500	ENSSTOG00000007125	-	91	49.500	Ictidomys_tridecemlineatus
ENSMAUG00000011683	Apobec3	97	54.958	ENSJJAG00000016840	-	99	50.485	Jaculus_jaculus
ENSMAUG00000011683	Apobec3	91	44.355	ENSLAFG00000027404	-	98	44.355	Loxodonta_africana
ENSMAUG00000011683	Apobec3	88	52.451	ENSMFAG00000031827	APOBEC3H	95	52.451	Macaca_fascicularis
ENSMAUG00000011683	Apobec3	88	51.961	ENSMMUG00000001016	APOBEC3H	95	51.961	Macaca_mulatta
ENSMAUG00000011683	Apobec3	88	52.451	ENSMNEG00000039259	APOBEC3H	95	52.451	Macaca_nemestrina
ENSMAUG00000011683	Apobec3	88	51.471	ENSMLEG00000033417	APOBEC3H	95	51.471	Mandrillus_leucophaeus
ENSMAUG00000011683	Apobec3	100	74.299	ENSMOCG00000021576	Apobec3	100	75.000	Microtus_ochrogaster
ENSMAUG00000011683	Apobec3	100	64.819	MGP_CAROLIEiJ_G0020029	Apobec3	100	67.774	Mus_caroli
ENSMAUG00000011683	Apobec3	100	65.783	ENSMUSG00000009585	Apobec3	100	67.110	Mus_musculus
ENSMAUG00000011683	Apobec3	100	67.633	MGP_PahariEiJ_G0020031	-	100	67.633	Mus_pahari
ENSMAUG00000011683	Apobec3	100	65.783	MGP_SPRETEiJ_G0020927	Apobec3	100	65.783	Mus_spretus
ENSMAUG00000011683	Apobec3	91	48.656	ENSMPUG00000013239	-	94	48.656	Mustela_putorius_furo
ENSMAUG00000011683	Apobec3	99	60.047	ENSNGAG00000018998	Apobec3	99	62.416	Nannospalax_galili
ENSMAUG00000011683	Apobec3	88	50.490	ENSNLEG00000015218	-	95	50.490	Nomascus_leucogenys
ENSMAUG00000011683	Apobec3	99	42.607	ENSOCUG00000023913	-	100	42.716	Oryctolagus_cuniculus
ENSMAUG00000011683	Apobec3	90	46.092	ENSOARG00000016290	APOBEC3F	98	46.092	Ovis_aries
ENSMAUG00000011683	Apobec3	72	49.189	ENSPPAG00000036522	APOBEC3H	100	49.198	Pan_paniscus
ENSMAUG00000011683	Apobec3	91	54.872	ENSPPRG00000003941	-	98	54.872	Panthera_pardus
ENSMAUG00000011683	Apobec3	88	45.556	ENSPPRG00000003675	-	98	45.556	Panthera_pardus
ENSMAUG00000011683	Apobec3	91	54.872	ENSPTIG00000010283	-	98	54.872	Panthera_tigris_altaica
ENSMAUG00000011683	Apobec3	72	49.189	ENSPTRG00000014390	APOBEC3H	100	49.198	Pan_troglodytes
ENSMAUG00000011683	Apobec3	88	51.961	ENSPANG00000010774	APOBEC3H	95	51.961	Papio_anubis
ENSMAUG00000011683	Apobec3	99	70.975	ENSPEMG00000000456	Apobec3	99	70.975	Peromyscus_maniculatus_bairdii
ENSMAUG00000011683	Apobec3	88	50.490	ENSPPYG00000011834	-	95	50.490	Pongo_abelii
ENSMAUG00000011683	Apobec3	75	40.625	ENSPCAG00000015655	-	99	40.625	Procavia_capensis
ENSMAUG00000011683	Apobec3	84	50.279	ENSPVAG00000009462	-	99	50.279	Pteropus_vampyrus
ENSMAUG00000011683	Apobec3	61	47.244	ENSPVAG00000024161	-	94	47.244	Pteropus_vampyrus
ENSMAUG00000011683	Apobec3	62	44.275	ENSPVAG00000024267	-	97	44.275	Pteropus_vampyrus
ENSMAUG00000011683	Apobec3	98	69.797	ENSRNOG00000016852	Apobec3	100	70.101	Rattus_norvegicus
ENSMAUG00000011683	Apobec3	88	50.490	ENSRBIG00000029088	APOBEC3H	95	50.490	Rhinopithecus_bieti
ENSMAUG00000011683	Apobec3	91	49.765	ENSRROG00000024699	APOBEC3H	95	50.490	Rhinopithecus_roxellana
ENSMAUG00000011683	Apobec3	86	53.514	ENSSBOG00000030005	APOBEC3H	100	54.545	Saimiri_boliviensis_boliviensis
ENSMAUG00000011683	Apobec3	98	46.667	ENSSSCG00000000091	APOBEC3B	98	45.498	Sus_scrofa
ENSMAUG00000011683	Apobec3	77	51.479	ENSTBEG00000001532	-	98	51.479	Tupaia_belangeri
ENSMAUG00000011683	Apobec3	80	49.171	ENSTTRG00000001266	-	99	49.171	Tursiops_truncatus
ENSMAUG00000011683	Apobec3	90	53.226	ENSUAMG00000004427	-	85	53.226	Ursus_americanus
ENSMAUG00000011683	Apobec3	91	54.359	ENSUMAG00000014435	-	98	55.307	Ursus_maritimus
ENSMAUG00000011683	Apobec3	58	49.600	ENSVPAG00000011108	-	98	49.600	Vicugna_pacos