EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAUG00000021067 (Gene tree)
Gene ID: 101842700
Gene Symbol: Pspc1
Alias: 5730470C09Rik|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Mesocricetus_auratus
Status: putative
Strand: Plus strand
Length: 57940 bases
Position: chrKB708180.1:11772362-11830301
Accession: 101842700
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAUP00000024112	RRM_1	PF00076.22	1.7e-32	1	2
ENSMAUP00000024112	RRM_1	PF00076.22	1.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAUT00000028126	-	1365	XM_005075343	ENSMAUP00000024112	454 (aa)	-	-

Gene Model

Click here to download ENSMAUG00000021067's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAUG00000021067's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAUG00000021067	Pspc1	75	64.080	ENSMAUG00000006402	Sfpq	54	63.158
ENSMAUG00000021067	Pspc1	78	58.031	ENSMAUG00000016243	Nono	82	62.245

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAUG00000021067	Pspc1	99	90.909	ENSG00000121390	PSPC1	100	95.968	Homo_sapiens
ENSMAUG00000021067	Pspc1	86	68.382	ENSAPOG00000015946	pspc1	88	67.733	Acanthochromis_polyacanthus
ENSMAUG00000021067	Pspc1	99	91.558	ENSAMEG00000017420	PSPC1	88	91.558	Ailuropoda_melanoleuca
ENSMAUG00000021067	Pspc1	89	63.855	ENSACIG00000018695	pspc1	79	64.096	Amphilophus_citrinellus
ENSMAUG00000021067	Pspc1	86	67.892	ENSAOCG00000005279	pspc1	89	65.707	Amphiprion_ocellaris
ENSMAUG00000021067	Pspc1	86	67.892	ENSAPEG00000015927	pspc1	89	65.707	Amphiprion_percula
ENSMAUG00000021067	Pspc1	86	64.899	ENSATEG00000004878	pspc1	84	60.090	Anabas_testudineus
ENSMAUG00000021067	Pspc1	77	63.315	ENSAPLG00000003643	SFPQ	69	64.754	Anas_platyrhynchos
ENSMAUG00000021067	Pspc1	73	87.172	ENSAPLG00000006246	PSPC1	85	87.172	Anas_platyrhynchos
ENSMAUG00000021067	Pspc1	75	59.834	ENSACAG00000013307	-	56	62.842	Anolis_carolinensis
ENSMAUG00000021067	Pspc1	98	80.819	ENSACAG00000002093	PSPC1	88	80.297	Anolis_carolinensis
ENSMAUG00000021067	Pspc1	99	92.208	ENSANAG00000000059	PSPC1	98	89.286	Aotus_nancymaae
ENSMAUG00000021067	Pspc1	99	58.761	ENSACLG00000027220	pspc1	88	58.547	Astatotilapia_calliptera
ENSMAUG00000021067	Pspc1	85	66.341	ENSAMXG00000036881	pspc1	87	63.057	Astyanax_mexicanus
ENSMAUG00000021067	Pspc1	99	90.466	ENSBTAG00000003934	PSPC1	88	90.466	Bos_taurus
ENSMAUG00000021067	Pspc1	99	93.792	ENSCJAG00000004554	PSPC1	88	93.792	Callithrix_jacchus
ENSMAUG00000021067	Pspc1	99	89.805	ENSCAFG00020002009	PSPC1	98	90.674	Canis_lupus_dingo
ENSMAUG00000021067	Pspc1	99	89.394	ENSCHIG00000016708	PSPC1	88	89.394	Capra_hircus
ENSMAUG00000021067	Pspc1	72	93.272	ENSTSYG00000032882	PSPC1	79	88.793	Carlito_syrichta
ENSMAUG00000021067	Pspc1	99	90.693	ENSCPOG00000000395	PSPC1	98	90.155	Cavia_porcellus
ENSMAUG00000021067	Pspc1	99	91.991	ENSCCAG00000033498	PSPC1	88	91.991	Cebus_capucinus
ENSMAUG00000021067	Pspc1	99	91.126	ENSCATG00000036434	PSPC1	99	90.948	Cercocebus_atys
ENSMAUG00000021067	Pspc1	86	80.597	ENSCLAG00000005241	PSPC1	86	80.597	Chinchilla_lanigera
ENSMAUG00000021067	Pspc1	99	83.766	ENSCHOG00000008913	PSPC1	88	83.550	Choloepus_hoffmanni
ENSMAUG00000021067	Pspc1	87	88.670	ENSCPBG00000020859	PSPC1	87	81.585	Chrysemys_picta_bellii
ENSMAUG00000021067	Pspc1	69	55.128	ENSCSAVG00000003533	-	64	52.663	Ciona_savignyi
ENSMAUG00000021067	Pspc1	73	85.285	ENSCANG00000018948	PSPC1	87	90.076	Colobus_angolensis_palliatus
ENSMAUG00000021067	Pspc1	99	94.360	ENSCGRG00001018368	Pspc1	88	94.360	Cricetulus_griseus_chok1gshd
ENSMAUG00000021067	Pspc1	99	94.360	ENSCGRG00000011724	Pspc1	88	94.360	Cricetulus_griseus_crigri
ENSMAUG00000021067	Pspc1	84	61.809	ENSCVAG00000007679	-	79	62.233	Cyprinodon_variegatus
ENSMAUG00000021067	Pspc1	99	63.226	ENSDARG00000006621	pspc1	86	62.151	Danio_rerio
ENSMAUG00000021067	Pspc1	99	90.260	ENSDNOG00000011078	PSPC1	88	90.476	Dasypus_novemcinctus
ENSMAUG00000021067	Pspc1	99	89.394	ENSDORG00000016050	Pspc1	88	89.394	Dipodomys_ordii
ENSMAUG00000021067	Pspc1	67	46.061	ENSEBUG00000010133	pspc1	84	46.341	Eptatretus_burgeri
ENSMAUG00000021067	Pspc1	86	59.360	ENSEBUG00000003964	-	62	67.246	Eptatretus_burgeri
ENSMAUG00000021067	Pspc1	99	91.323	ENSEASG00005000119	PSPC1	99	89.948	Equus_asinus_asinus
ENSMAUG00000021067	Pspc1	99	91.323	ENSECAG00000017286	PSPC1	99	89.948	Equus_caballus
ENSMAUG00000021067	Pspc1	71	83.489	ENSEEUG00000011288	-	61	84.112	Erinaceus_europaeus
ENSMAUG00000021067	Pspc1	99	63.559	ENSELUG00000003746	pspc1	94	67.347	Esox_lucius
ENSMAUG00000021067	Pspc1	99	91.126	ENSFCAG00000027841	PSPC1	98	90.415	Felis_catus
ENSMAUG00000021067	Pspc1	98	82.468	ENSFALG00000008750	PSPC1	88	81.607	Ficedula_albicollis
ENSMAUG00000021067	Pspc1	99	89.154	ENSFDAG00000002617	PSPC1	88	89.154	Fukomys_damarensis
ENSMAUG00000021067	Pspc1	85	65.835	ENSGMOG00000015074	pspc1	76	65.509	Gadus_morhua
ENSMAUG00000021067	Pspc1	98	81.838	ENSGALG00000017142	PSPC1	87	82.128	Gallus_gallus
ENSMAUG00000021067	Pspc1	73	65.909	ENSGAFG00000006327	pspc1	81	63.544	Gambusia_affinis
ENSMAUG00000021067	Pspc1	86	61.823	ENSGACG00000014901	pspc1	93	66.269	Gasterosteus_aculeatus
ENSMAUG00000021067	Pspc1	87	88.670	ENSGAGG00000019164	PSPC1	87	81.370	Gopherus_agassizii
ENSMAUG00000021067	Pspc1	81	61.082	ENSGAGG00000017325	-	58	62.402	Gopherus_agassizii
ENSMAUG00000021067	Pspc1	99	90.909	ENSGGOG00000003414	PSPC1	98	90.674	Gorilla_gorilla
ENSMAUG00000021067	Pspc1	99	59.708	ENSHBUG00000001139	pspc1	88	61.134	Haplochromis_burtoni
ENSMAUG00000021067	Pspc1	99	90.909	ENSHGLG00000018811	PSPC1	88	90.909	Heterocephalus_glaber_female
ENSMAUG00000021067	Pspc1	71	91.277	ENSHGLG00100007962	PSPC1	98	87.427	Heterocephalus_glaber_male
ENSMAUG00000021067	Pspc1	84	58.924	ENSHCOG00000013251	pspc1	93	61.374	Hippocampus_comes
ENSMAUG00000021067	Pspc1	98	64.119	ENSIPUG00000013192	pspc1	86	66.098	Ictalurus_punctatus
ENSMAUG00000021067	Pspc1	99	91.991	ENSSTOG00000026833	PSPC1	98	90.933	Ictidomys_tridecemlineatus
ENSMAUG00000021067	Pspc1	99	91.757	ENSJJAG00000018334	Pspc1	88	91.757	Jaculus_jaculus
ENSMAUG00000021067	Pspc1	86	52.956	ENSKMAG00000013525	-	91	52.048	Kryptolebias_marmoratus
ENSMAUG00000021067	Pspc1	94	61.798	ENSLBEG00000004474	pspc1	80	64.921	Labrus_bergylta
ENSMAUG00000021067	Pspc1	99	68.201	ENSLACG00000010762	PSPC1	88	72.611	Latimeria_chalumnae
ENSMAUG00000021067	Pspc1	86	80.500	ENSLOCG00000010832	pspc1	88	73.043	Lepisosteus_oculatus
ENSMAUG00000021067	Pspc1	99	90.239	ENSLAFG00000010968	PSPC1	88	90.239	Loxodonta_africana
ENSMAUG00000021067	Pspc1	99	90.909	ENSMFAG00000032728	PSPC1	99	90.733	Macaca_fascicularis
ENSMAUG00000021067	Pspc1	100	90.558	ENSMMUG00000020262	PSPC1	99	90.733	Macaca_mulatta
ENSMAUG00000021067	Pspc1	99	90.909	ENSMNEG00000027401	PSPC1	99	90.733	Macaca_nemestrina
ENSMAUG00000021067	Pspc1	99	91.124	ENSMLEG00000039043	PSPC1	86	91.124	Mandrillus_leucophaeus
ENSMAUG00000021067	Pspc1	85	69.133	ENSMAMG00000004333	pspc1	76	68.702	Mastacembelus_armatus
ENSMAUG00000021067	Pspc1	99	58.761	ENSMZEG00005005726	pspc1	88	58.547	Maylandia_zebra
ENSMAUG00000021067	Pspc1	73	86.957	ENSMGAG00000015134	PSPC1	85	86.957	Meleagris_gallopavo
ENSMAUG00000021067	Pspc1	100	91.183	ENSMICG00000013970	PSPC1	99	91.183	Microcebus_murinus
ENSMAUG00000021067	Pspc1	99	93.059	ENSMOCG00000006060	Pspc1	88	93.059	Microtus_ochrogaster
ENSMAUG00000021067	Pspc1	69	57.692	ENSMMOG00000004352	pspc1	58	57.692	Mola_mola
ENSMAUG00000021067	Pspc1	99	90.693	ENSMODG00000008029	PSPC1	75	90.693	Monodelphis_domestica
ENSMAUG00000021067	Pspc1	89	62.037	ENSMALG00000008914	pspc1	81	64.319	Monopterus_albus
ENSMAUG00000021067	Pspc1	100	93.133	MGP_CAROLIEiJ_G0019341	Pspc1	100	93.133	Mus_caroli
ENSMAUG00000021067	Pspc1	100	92.918	ENSMUSG00000021938	Pspc1	100	92.918	Mus_musculus
ENSMAUG00000021067	Pspc1	100	93.133	MGP_PahariEiJ_G0030359	Pspc1	100	93.133	Mus_pahari
ENSMAUG00000021067	Pspc1	100	92.918	MGP_SPRETEiJ_G0020232	Pspc1	100	92.918	Mus_spretus
ENSMAUG00000021067	Pspc1	99	91.126	ENSMPUG00000013347	PSPC1	88	91.342	Mustela_putorius_furo
ENSMAUG00000021067	Pspc1	99	89.677	ENSMLUG00000017663	PSPC1	88	90.323	Myotis_lucifugus
ENSMAUG00000021067	Pspc1	99	93.059	ENSNGAG00000011271	Pspc1	88	93.059	Nannospalax_galili
ENSMAUG00000021067	Pspc1	82	66.234	ENSNBRG00000014059	pspc1	92	66.234	Neolamprologus_brichardi
ENSMAUG00000021067	Pspc1	99	90.909	ENSNLEG00000001294	PSPC1	88	91.558	Nomascus_leucogenys
ENSMAUG00000021067	Pspc1	73	94.922	ENSMEUG00000000476	PSPC1	70	94.922	Notamacropus_eugenii
ENSMAUG00000021067	Pspc1	99	83.878	ENSODEG00000007817	-	88	84.314	Octodon_degus
ENSMAUG00000021067	Pspc1	99	87.391	ENSODEG00000019012	-	88	87.826	Octodon_degus
ENSMAUG00000021067	Pspc1	99	59.916	ENSONIG00000012010	pspc1	88	61.345	Oreochromis_niloticus
ENSMAUG00000021067	Pspc1	72	90.533	ENSOANG00000009017	-	85	90.533	Ornithorhynchus_anatinus
ENSMAUG00000021067	Pspc1	99	64.551	ENSOANG00000011381	-	87	64.333	Ornithorhynchus_anatinus
ENSMAUG00000021067	Pspc1	99	91.126	ENSOCUG00000006153	PSPC1	88	91.775	Oryctolagus_cuniculus
ENSMAUG00000021067	Pspc1	85	67.003	ENSORLG00000004232	-	80	66.121	Oryzias_latipes
ENSMAUG00000021067	Pspc1	86	66.917	ENSORLG00020000578	PSPC1	81	66.279	Oryzias_latipes_hni
ENSMAUG00000021067	Pspc1	86	67.168	ENSORLG00015017480	pspc1	81	66.279	Oryzias_latipes_hsok
ENSMAUG00000021067	Pspc1	99	91.991	ENSOGAG00000012643	PSPC1	88	91.991	Otolemur_garnettii
ENSMAUG00000021067	Pspc1	99	84.017	ENSOARG00000014163	PSPC1	87	84.881	Ovis_aries
ENSMAUG00000021067	Pspc1	87	93.130	ENSPPAG00000009836	PSPC1	98	88.184	Pan_paniscus
ENSMAUG00000021067	Pspc1	99	91.126	ENSPPRG00000008833	PSPC1	88	91.558	Panthera_pardus
ENSMAUG00000021067	Pspc1	99	74.837	ENSPTIG00000016917	PSPC1	87	74.837	Panthera_tigris_altaica
ENSMAUG00000021067	Pspc1	99	92.239	ENSPTRG00000005677	PSPC1	98	90.674	Pan_troglodytes
ENSMAUG00000021067	Pspc1	99	91.126	ENSPANG00000001992	PSPC1	99	90.948	Papio_anubis
ENSMAUG00000021067	Pspc1	88	72.616	ENSPKIG00000003578	pspc1	76	72.372	Paramormyrops_kingsleyae
ENSMAUG00000021067	Pspc1	98	81.023	ENSPSIG00000005168	PSPC1	87	81.450	Pelodiscus_sinensis
ENSMAUG00000021067	Pspc1	62	69.611	ENSPMGG00000015135	pspc1	84	63.804	Periophthalmus_magnuspinnatus
ENSMAUG00000021067	Pspc1	99	93.926	ENSPEMG00000015214	Pspc1	88	93.926	Peromyscus_maniculatus_bairdii
ENSMAUG00000021067	Pspc1	55	47.860	ENSPMAG00000004618	pspc1	84	45.205	Petromyzon_marinus
ENSMAUG00000021067	Pspc1	99	90.889	ENSPCIG00000017680	PSPC1	88	90.889	Phascolarctos_cinereus
ENSMAUG00000021067	Pspc1	90	63.134	ENSPFOG00000003362	pspc1	84	63.575	Poecilia_formosa
ENSMAUG00000021067	Pspc1	78	55.914	ENSPLAG00000004407	-	53	59.621	Poecilia_latipinna
ENSMAUG00000021067	Pspc1	99	59.414	ENSPLAG00000011540	pspc1	88	61.489	Poecilia_latipinna
ENSMAUG00000021067	Pspc1	99	58.996	ENSPMEG00000008322	pspc1	88	61.064	Poecilia_mexicana
ENSMAUG00000021067	Pspc1	78	55.914	ENSPMEG00000001025	-	53	59.621	Poecilia_mexicana
ENSMAUG00000021067	Pspc1	98	59.072	ENSPREG00000007786	pspc1	88	60.470	Poecilia_reticulata
ENSMAUG00000021067	Pspc1	100	90.753	ENSPPYG00000005186	PSPC1	98	91.183	Pongo_abelii
ENSMAUG00000021067	Pspc1	61	86.992	ENSPCAG00000008314	-	55	86.992	Procavia_capensis
ENSMAUG00000021067	Pspc1	99	87.446	ENSPCOG00000014364	PSPC1	88	87.446	Propithecus_coquereli
ENSMAUG00000021067	Pspc1	99	87.636	ENSPVAG00000005036	PSPC1	88	89.588	Pteropus_vampyrus
ENSMAUG00000021067	Pspc1	99	58.761	ENSPNYG00000008893	pspc1	88	58.547	Pundamilia_nyererei
ENSMAUG00000021067	Pspc1	87	69.268	ENSPNAG00000016511	pspc1	98	62.395	Pygocentrus_nattereri
ENSMAUG00000021067	Pspc1	99	93.492	ENSRNOG00000020782	Pspc1	99	93.305	Rattus_norvegicus
ENSMAUG00000021067	Pspc1	91	91.315	ENSRBIG00000036057	PSPC1	100	87.912	Rhinopithecus_bieti
ENSMAUG00000021067	Pspc1	99	91.342	ENSRROG00000036334	PSPC1	100	88.250	Rhinopithecus_roxellana
ENSMAUG00000021067	Pspc1	73	91.291	ENSSBOG00000028172	PSPC1	88	88.433	Saimiri_boliviensis_boliviensis
ENSMAUG00000021067	Pspc1	99	87.312	ENSSHAG00000004696	PSPC1	88	89.871	Sarcophilus_harrisii
ENSMAUG00000021067	Pspc1	87	76.010	ENSSFOG00015001395	pspc1	83	75.758	Scleropages_formosus
ENSMAUG00000021067	Pspc1	94	60.976	ENSSMAG00000001761	pspc1	86	68.497	Scophthalmus_maximus
ENSMAUG00000021067	Pspc1	86	67.980	ENSSDUG00000010651	pspc1	81	65.188	Seriola_dumerili
ENSMAUG00000021067	Pspc1	85	66.752	ENSSLDG00000004284	pspc1	85	61.959	Seriola_lalandi_dorsalis
ENSMAUG00000021067	Pspc1	99	84.816	ENSSARG00000000888	PSPC1	88	89.371	Sorex_araneus
ENSMAUG00000021067	Pspc1	76	55.342	ENSSPUG00000001136	-	53	56.787	Sphenodon_punctatus
ENSMAUG00000021067	Pspc1	98	77.419	ENSSPUG00000008550	PSPC1	87	77.897	Sphenodon_punctatus
ENSMAUG00000021067	Pspc1	86	67.734	ENSSPAG00000001921	pspc1	82	65.324	Stegastes_partitus
ENSMAUG00000021067	Pspc1	99	89.588	ENSSSCG00000009569	PSPC1	99	89.147	Sus_scrofa
ENSMAUG00000021067	Pspc1	87	89.163	ENSTGUG00000011295	PSPC1	87	89.163	Taeniopygia_guttata
ENSMAUG00000021067	Pspc1	86	60.494	ENSTRUG00000011335	pspc1	75	62.531	Takifugu_rubripes
ENSMAUG00000021067	Pspc1	86	62.283	ENSTNIG00000010358	pspc1	86	60.706	Tetraodon_nigroviridis
ENSMAUG00000021067	Pspc1	99	72.294	ENSTBEG00000002361	PSPC1	89	74.620	Tupaia_belangeri
ENSMAUG00000021067	Pspc1	99	90.239	ENSTTRG00000003343	PSPC1	88	90.239	Tursiops_truncatus
ENSMAUG00000021067	Pspc1	71	96.584	ENSUAMG00000012309	PSPC1	98	92.420	Ursus_americanus
ENSMAUG00000021067	Pspc1	91	91.315	ENSUMAG00000013993	PSPC1	98	90.000	Ursus_maritimus
ENSMAUG00000021067	Pspc1	72	91.420	ENSVPAG00000010029	PSPC1	85	91.420	Vicugna_pacos
ENSMAUG00000021067	Pspc1	99	89.805	ENSVVUG00000006414	PSPC1	100	90.674	Vulpes_vulpes
ENSMAUG00000021067	Pspc1	77	65.668	ENSXCOG00000017438	pspc1	93	63.291	Xiphophorus_couchianus
ENSMAUG00000021067	Pspc1	77	65.940	ENSXMAG00000007929	pspc1	93	63.544	Xiphophorus_maculatus