EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMEUG00000000476 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Notamacropus_eugenii
Status: putative
Strand: Minus strand
Length: 30509 bases
Position: chrGeneScaffold_3434:5177-35685
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMEUP00000000444	RRM_1	PF00076.22	1.5e-32	1	2
ENSMEUP00000000444	RRM_1	PF00076.22	1.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMEUT00000000483	PSPC1-201	1569	-	ENSMEUP00000000444	522 (aa)	-	UPI0001B20F21

Gene Model

Click here to download ENSMEUG00000000476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMEUG00000000476's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMEUG00000000476	PSPC1	84	95.703	ENSG00000121390	PSPC1	100	95.565	Homo_sapiens
ENSMEUG00000000476	PSPC1	75	73.077	ENSAPOG00000015946	pspc1	61	70.909	Acanthochromis_polyacanthus
ENSMEUG00000000476	PSPC1	84	94.922	ENSAMEG00000017420	PSPC1	84	94.141	Ailuropoda_melanoleuca
ENSMEUG00000000476	PSPC1	72	75.773	ENSAOCG00000005279	pspc1	60	70.000	Amphiprion_ocellaris
ENSMEUG00000000476	PSPC1	72	75.773	ENSAPEG00000015927	pspc1	61	70.000	Amphiprion_percula
ENSMEUG00000000476	PSPC1	61	94.853	ENSAPLG00000006246	PSPC1	80	94.853	Anas_platyrhynchos
ENSMEUG00000000476	PSPC1	83	82.283	ENSACAG00000002093	PSPC1	84	82.283	Anolis_carolinensis
ENSMEUG00000000476	PSPC1	84	95.312	ENSANAG00000000059	PSPC1	84	94.531	Aotus_nancymaae
ENSMEUG00000000476	PSPC1	84	64.528	ENSAMXG00000036881	pspc1	67	74.882	Astyanax_mexicanus
ENSMEUG00000000476	PSPC1	84	91.829	ENSBTAG00000003934	PSPC1	84	89.883	Bos_taurus
ENSMEUG00000000476	PSPC1	84	95.312	ENSCJAG00000004554	PSPC1	84	94.531	Callithrix_jacchus
ENSMEUG00000000476	PSPC1	84	92.578	ENSCAFG00020002009	PSPC1	84	93.750	Canis_lupus_dingo
ENSMEUG00000000476	PSPC1	84	91.829	ENSCHIG00000016708	PSPC1	84	89.883	Capra_hircus
ENSMEUG00000000476	PSPC1	55	100.000	ENSTSYG00000032882	PSPC1	64	100.000	Carlito_syrichta
ENSMEUG00000000476	PSPC1	84	94.141	ENSCPOG00000000395	PSPC1	84	91.797	Cavia_porcellus
ENSMEUG00000000476	PSPC1	84	95.312	ENSCCAG00000033498	PSPC1	84	94.531	Cebus_capucinus
ENSMEUG00000000476	PSPC1	84	96.094	ENSCATG00000036434	PSPC1	84	96.094	Cercocebus_atys
ENSMEUG00000000476	PSPC1	73	74.242	ENSCLAG00000005241	PSPC1	81	75.000	Chinchilla_lanigera
ENSMEUG00000000476	PSPC1	84	95.312	ENSCHOG00000008913	PSPC1	84	95.312	Choloepus_hoffmanni
ENSMEUG00000000476	PSPC1	83	80.077	ENSCPBG00000020859	PSPC1	74	96.000	Chrysemys_picta_bellii
ENSMEUG00000000476	PSPC1	64	96.377	ENSCANG00000018948	PSPC1	65	100.000	Colobus_angolensis_palliatus
ENSMEUG00000000476	PSPC1	84	94.922	ENSCGRG00001018368	Pspc1	84	94.922	Cricetulus_griseus_chok1gshd
ENSMEUG00000000476	PSPC1	84	94.922	ENSCGRG00000011724	Pspc1	84	94.922	Cricetulus_griseus_crigri
ENSMEUG00000000476	PSPC1	84	66.284	ENSDARG00000006621	pspc1	79	80.882	Danio_rerio
ENSMEUG00000000476	PSPC1	100	75.717	ENSDNOG00000011078	PSPC1	100	75.717	Dasypus_novemcinctus
ENSMEUG00000000476	PSPC1	84	89.844	ENSDORG00000016050	Pspc1	84	89.844	Dipodomys_ordii
ENSMEUG00000000476	PSPC1	55	100.000	ENSETEG00000000502	-	55	100.000	Echinops_telfairi
ENSMEUG00000000476	PSPC1	84	94.141	ENSEASG00005000119	PSPC1	84	92.969	Equus_asinus_asinus
ENSMEUG00000000476	PSPC1	84	94.141	ENSECAG00000017286	PSPC1	84	92.969	Equus_caballus
ENSMEUG00000000476	PSPC1	55	90.164	ENSEEUG00000011288	-	54	90.164	Erinaceus_europaeus
ENSMEUG00000000476	PSPC1	76	76.777	ENSELUG00000003746	pspc1	67	76.777	Esox_lucius
ENSMEUG00000000476	PSPC1	84	94.531	ENSFCAG00000027841	PSPC1	84	93.359	Felis_catus
ENSMEUG00000000476	PSPC1	83	81.961	ENSFALG00000008750	PSPC1	84	81.961	Ficedula_albicollis
ENSMEUG00000000476	PSPC1	84	91.016	ENSFDAG00000002617	PSPC1	84	91.016	Fukomys_damarensis
ENSMEUG00000000476	PSPC1	72	97.938	ENSGALG00000017142	PSPC1	74	96.500	Gallus_gallus
ENSMEUG00000000476	PSPC1	72	70.103	ENSGACG00000014901	pspc1	58	70.103	Gasterosteus_aculeatus
ENSMEUG00000000476	PSPC1	83	79.693	ENSGAGG00000019164	PSPC1	74	96.000	Gopherus_agassizii
ENSMEUG00000000476	PSPC1	84	95.703	ENSGGOG00000003414	PSPC1	84	95.703	Gorilla_gorilla
ENSMEUG00000000476	PSPC1	84	60.674	ENSHBUG00000001139	pspc1	72	74.227	Haplochromis_burtoni
ENSMEUG00000000476	PSPC1	100	74.952	ENSHGLG00000018811	PSPC1	100	74.952	Heterocephalus_glaber_female
ENSMEUG00000000476	PSPC1	72	84.021	ENSIPUG00000013192	pspc1	75	80.488	Ictalurus_punctatus
ENSMEUG00000000476	PSPC1	84	95.703	ENSSTOG00000026833	PSPC1	84	95.703	Ictidomys_tridecemlineatus
ENSMEUG00000000476	PSPC1	100	75.717	ENSJJAG00000018334	Pspc1	100	75.717	Jaculus_jaculus
ENSMEUG00000000476	PSPC1	75	71.014	ENSLBEG00000004474	pspc1	55	71.014	Labrus_bergylta
ENSMEUG00000000476	PSPC1	84	68.382	ENSLACG00000010762	PSPC1	73	86.224	Latimeria_chalumnae
ENSMEUG00000000476	PSPC1	72	83.505	ENSLOCG00000010832	pspc1	74	83.505	Lepisosteus_oculatus
ENSMEUG00000000476	PSPC1	84	94.141	ENSLAFG00000010968	PSPC1	84	94.141	Loxodonta_africana
ENSMEUG00000000476	PSPC1	100	76.291	ENSMFAG00000032728	PSPC1	100	76.291	Macaca_fascicularis
ENSMEUG00000000476	PSPC1	100	76.291	ENSMMUG00000020262	PSPC1	100	76.291	Macaca_mulatta
ENSMEUG00000000476	PSPC1	100	76.291	ENSMNEG00000027401	PSPC1	100	76.291	Macaca_nemestrina
ENSMEUG00000000476	PSPC1	84	100.000	ENSMLEG00000039043	PSPC1	80	100.000	Mandrillus_leucophaeus
ENSMEUG00000000476	PSPC1	76	73.232	ENSMAMG00000004333	pspc1	78	50.913	Mastacembelus_armatus
ENSMEUG00000000476	PSPC1	62	94.203	ENSMGAG00000015134	PSPC1	80	94.203	Meleagris_gallopavo
ENSMEUG00000000476	PSPC1	70	94.922	ENSMAUG00000021067	Pspc1	73	94.922	Mesocricetus_auratus
ENSMEUG00000000476	PSPC1	84	95.312	ENSMICG00000013970	PSPC1	84	95.312	Microcebus_murinus
ENSMEUG00000000476	PSPC1	84	95.312	ENSMOCG00000006060	Pspc1	84	95.312	Microtus_ochrogaster
ENSMEUG00000000476	PSPC1	77	99.219	ENSMODG00000008029	PSPC1	65	99.219	Monodelphis_domestica
ENSMEUG00000000476	PSPC1	72	72.680	ENSMALG00000008914	pspc1	66	70.936	Monopterus_albus
ENSMEUG00000000476	PSPC1	84	95.703	MGP_CAROLIEiJ_G0019341	Pspc1	84	95.703	Mus_caroli
ENSMEUG00000000476	PSPC1	84	95.703	ENSMUSG00000021938	Pspc1	84	95.703	Mus_musculus
ENSMEUG00000000476	PSPC1	84	95.703	MGP_PahariEiJ_G0030359	Pspc1	84	95.703	Mus_pahari
ENSMEUG00000000476	PSPC1	84	95.312	MGP_SPRETEiJ_G0020232	Pspc1	84	95.312	Mus_spretus
ENSMEUG00000000476	PSPC1	84	94.141	ENSMPUG00000013347	PSPC1	84	92.969	Mustela_putorius_furo
ENSMEUG00000000476	PSPC1	84	93.359	ENSMLUG00000017663	PSPC1	84	92.188	Myotis_lucifugus
ENSMEUG00000000476	PSPC1	84	94.922	ENSNGAG00000011271	Pspc1	84	94.922	Nannospalax_galili
ENSMEUG00000000476	PSPC1	100	76.099	ENSNLEG00000001294	PSPC1	100	76.099	Nomascus_leucogenys
ENSMEUG00000000476	PSPC1	79	81.250	ENSODEG00000007817	-	79	78.906	Octodon_degus
ENSMEUG00000000476	PSPC1	79	89.453	ENSODEG00000019012	-	68	88.281	Octodon_degus
ENSMEUG00000000476	PSPC1	84	61.049	ENSONIG00000012010	pspc1	63	74.742	Oreochromis_niloticus
ENSMEUG00000000476	PSPC1	61	100.000	ENSOANG00000009017	-	79	100.000	Ornithorhynchus_anatinus
ENSMEUG00000000476	PSPC1	99	50.478	ENSOANG00000011381	-	79	63.922	Ornithorhynchus_anatinus
ENSMEUG00000000476	PSPC1	84	96.094	ENSOCUG00000006153	PSPC1	84	96.094	Oryctolagus_cuniculus
ENSMEUG00000000476	PSPC1	84	96.094	ENSOGAG00000012643	PSPC1	84	96.094	Otolemur_garnettii
ENSMEUG00000000476	PSPC1	100	69.714	ENSOARG00000014163	PSPC1	100	69.714	Ovis_aries
ENSMEUG00000000476	PSPC1	75	98.492	ENSPPAG00000009836	PSPC1	80	98.492	Pan_paniscus
ENSMEUG00000000476	PSPC1	84	94.531	ENSPPRG00000008833	PSPC1	84	93.359	Panthera_pardus
ENSMEUG00000000476	PSPC1	84	73.514	ENSPTIG00000016917	PSPC1	83	75.135	Panthera_tigris_altaica
ENSMEUG00000000476	PSPC1	78	95.703	ENSPTRG00000005677	PSPC1	82	95.703	Pan_troglodytes
ENSMEUG00000000476	PSPC1	84	96.094	ENSPANG00000001992	PSPC1	84	96.094	Papio_anubis
ENSMEUG00000000476	PSPC1	66	79.293	ENSPKIG00000003578	pspc1	65	79.293	Paramormyrops_kingsleyae
ENSMEUG00000000476	PSPC1	83	80.989	ENSPSIG00000005168	PSPC1	74	96.020	Pelodiscus_sinensis
ENSMEUG00000000476	PSPC1	84	95.312	ENSPEMG00000015214	Pspc1	84	95.312	Peromyscus_maniculatus_bairdii
ENSMEUG00000000476	PSPC1	99	79.119	ENSPCIG00000017680	PSPC1	100	79.119	Phascolarctos_cinereus
ENSMEUG00000000476	PSPC1	100	75.908	ENSPPYG00000005186	PSPC1	100	75.908	Pongo_abelii
ENSMEUG00000000476	PSPC1	51	100.000	ENSPCAG00000008314	-	66	90.164	Procavia_capensis
ENSMEUG00000000476	PSPC1	84	95.703	ENSPCOG00000014364	PSPC1	84	95.703	Propithecus_coquereli
ENSMEUG00000000476	PSPC1	84	91.016	ENSPVAG00000005036	PSPC1	84	91.797	Pteropus_vampyrus
ENSMEUG00000000476	PSPC1	83	66.154	ENSPNAG00000016511	pspc1	76	75.355	Pygocentrus_nattereri
ENSMEUG00000000476	PSPC1	84	95.312	ENSRNOG00000020782	Pspc1	84	95.312	Rattus_norvegicus
ENSMEUG00000000476	PSPC1	93	74.949	ENSRBIG00000036057	PSPC1	98	78.286	Rhinopithecus_bieti
ENSMEUG00000000476	PSPC1	84	96.094	ENSRROG00000036334	PSPC1	84	96.094	Rhinopithecus_roxellana
ENSMEUG00000000476	PSPC1	65	91.096	ENSSBOG00000028172	PSPC1	69	98.413	Saimiri_boliviensis_boliviensis
ENSMEUG00000000476	PSPC1	79	99.219	ENSSHAG00000004696	PSPC1	78	99.219	Sarcophilus_harrisii
ENSMEUG00000000476	PSPC1	65	81.959	ENSSFOG00015001395	pspc1	72	81.959	Scleropages_formosus
ENSMEUG00000000476	PSPC1	72	76.804	ENSSDUG00000010651	pspc1	61	76.804	Seriola_dumerili
ENSMEUG00000000476	PSPC1	79	90.234	ENSSARG00000000888	PSPC1	78	91.406	Sorex_araneus
ENSMEUG00000000476	PSPC1	78	79.151	ENSSPUG00000008550	PSPC1	69	94.500	Sphenodon_punctatus
ENSMEUG00000000476	PSPC1	72	75.258	ENSSPAG00000001921	pspc1	65	71.090	Stegastes_partitus
ENSMEUG00000000476	PSPC1	84	91.016	ENSSSCG00000009569	PSPC1	78	97.917	Sus_scrofa
ENSMEUG00000000476	PSPC1	89	71.306	ENSTGUG00000011295	PSPC1	100	71.306	Taeniopygia_guttata
ENSMEUG00000000476	PSPC1	95	45.029	ENSTRUG00000011335	pspc1	74	50.390	Takifugu_rubripes
ENSMEUG00000000476	PSPC1	88	49.571	ENSTNIG00000010358	pspc1	87	49.161	Tetraodon_nigroviridis
ENSMEUG00000000476	PSPC1	67	95.833	ENSTBEG00000002361	PSPC1	59	95.833	Tupaia_belangeri
ENSMEUG00000000476	PSPC1	84	92.578	ENSTTRG00000003343	PSPC1	84	90.625	Tursiops_truncatus
ENSMEUG00000000476	PSPC1	77	96.364	ENSUMAG00000013993	PSPC1	81	97.156	Ursus_maritimus
ENSMEUG00000000476	PSPC1	61	100.000	ENSVPAG00000010029	PSPC1	79	100.000	Vicugna_pacos
ENSMEUG00000000476	PSPC1	84	92.578	ENSVVUG00000006414	PSPC1	84	93.750	Vulpes_vulpes