EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMEUG00000004395 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Notamacropus_eugenii
Status: putative
Strand: Plus strand
Length: 75219 bases
Position: chrGeneScaffold_4860:32825-108043
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMEUP00000004014	ResIII	PF04851.15	1.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMEUT00000004421	SMARCAL1-201	2598	-	ENSMEUP00000004014	866 (aa)	-	UPI0001B2272F

Gene Model

Click here to download ENSMEUG00000004395's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMEUG00000004395's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMEUG00000004395	SMARCAL1	100	64.926	ENSG00000138375	SMARCAL1	99	75.000	Homo_sapiens
ENSMEUG00000004395	SMARCAL1	73	63.297	ENSAPOG00000020156	SMARCAL1	92	51.624	Acanthochromis_polyacanthus
ENSMEUG00000004395	SMARCAL1	74	64.462	ENSACIG00000001500	smarcal1	90	65.204	Amphilophus_citrinellus
ENSMEUG00000004395	SMARCAL1	100	51.448	ENSAOCG00000014266	SMARCAL1	94	52.072	Amphiprion_ocellaris
ENSMEUG00000004395	SMARCAL1	91	68.715	ENSAPEG00000015861	SMARCAL1	91	68.715	Amphiprion_percula
ENSMEUG00000004395	SMARCAL1	75	62.332	ENSATEG00000020624	SMARCAL1	69	64.025	Anabas_testudineus
ENSMEUG00000004395	SMARCAL1	99	56.893	ENSAPLG00000009864	SMARCAL1	93	56.893	Anas_platyrhynchos
ENSMEUG00000004395	SMARCAL1	74	69.325	ENSACAG00000004612	SMARCAL1	65	70.283	Anolis_carolinensis
ENSMEUG00000004395	SMARCAL1	74	63.206	ENSACLG00000015990	SMARCAL1	93	51.585	Astatotilapia_calliptera
ENSMEUG00000004395	SMARCAL1	100	53.681	ENSAMXG00000003350	smarcal1	93	53.228	Astyanax_mexicanus
ENSMEUG00000004395	SMARCAL1	97	73.262	ENSCPBG00000013599	SMARCAL1	70	73.155	Chrysemys_picta_bellii
ENSMEUG00000004395	SMARCAL1	72	48.038	ENSCING00000009308	-	99	48.013	Ciona_intestinalis
ENSMEUG00000004395	SMARCAL1	73	63.281	ENSCSEG00000010785	SMARCAL1	75	63.651	Cynoglossus_semilaevis
ENSMEUG00000004395	SMARCAL1	99	53.986	ENSCVAG00000018780	SMARCAL1	91	53.986	Cyprinodon_variegatus
ENSMEUG00000004395	SMARCAL1	59	52.299	ENSEBUG00000011906	SMARCAL1	99	42.424	Eptatretus_burgeri
ENSMEUG00000004395	SMARCAL1	73	63.482	ENSELUG00000010440	-	61	64.006	Esox_lucius
ENSMEUG00000004395	SMARCAL1	99	55.700	ENSFALG00000003981	SMARCAL1	93	55.908	Ficedula_albicollis
ENSMEUG00000004395	SMARCAL1	73	62.928	ENSFHEG00000008380	SMARCAL1	91	51.653	Fundulus_heteroclitus
ENSMEUG00000004395	SMARCAL1	60	61.253	ENSGMOG00000010034	smarcal1	95	61.253	Gadus_morhua
ENSMEUG00000004395	SMARCAL1	100	58.224	ENSGALG00000011475	RPL37A	93	58.269	Gallus_gallus
ENSMEUG00000004395	SMARCAL1	72	66.108	ENSGACG00000006073	SMARCAL1	100	65.736	Gasterosteus_aculeatus
ENSMEUG00000004395	SMARCAL1	100	57.895	ENSGAGG00000015660	SMARCAL1	99	57.680	Gopherus_agassizii
ENSMEUG00000004395	SMARCAL1	100	53.244	ENSHBUG00000002973	smarcal1	93	52.974	Haplochromis_burtoni
ENSMEUG00000004395	SMARCAL1	74	63.247	ENSHCOG00000017921	smarcal1	77	63.247	Hippocampus_comes
ENSMEUG00000004395	SMARCAL1	72	62.500	ENSKMAG00000012023	SMARCAL1	72	63.016	Kryptolebias_marmoratus
ENSMEUG00000004395	SMARCAL1	74	60.638	ENSLBEG00000022915	smarcal1	82	61.514	Labrus_bergylta
ENSMEUG00000004395	SMARCAL1	73	61.860	ENSLBEG00000003493	smarcal1	72	62.802	Labrus_bergylta
ENSMEUG00000004395	SMARCAL1	100	51.153	ENSLACG00000010974	SMARCAL1	93	51.054	Latimeria_chalumnae
ENSMEUG00000004395	SMARCAL1	100	55.028	ENSLOCG00000009637	smarcal1	99	54.668	Lepisosteus_oculatus
ENSMEUG00000004395	SMARCAL1	100	51.624	ENSMAMG00000000828	SMARCAL1	73	62.871	Mastacembelus_armatus
ENSMEUG00000004395	SMARCAL1	74	63.053	ENSMZEG00005007660	SMARCAL1	93	51.475	Maylandia_zebra
ENSMEUG00000004395	SMARCAL1	100	58.296	ENSMGAG00000011658	SMARCAL1	92	58.343	Meleagris_gallopavo
ENSMEUG00000004395	SMARCAL1	74	60.890	ENSMMOG00000003842	smarcal1	80	61.624	Mola_mola
ENSMEUG00000004395	SMARCAL1	100	74.029	ENSMODG00000015544	SMARCAL1	92	74.029	Monodelphis_domestica
ENSMEUG00000004395	SMARCAL1	74	63.053	ENSNBRG00000016273	smarcal1	82	63.764	Neolamprologus_brichardi
ENSMEUG00000004395	SMARCAL1	100	51.758	ENSONIG00000009036	smarcal1	93	65.605	Oreochromis_niloticus
ENSMEUG00000004395	SMARCAL1	100	52.159	ENSORLG00000016455	SMARCAL1	92	52.159	Oryzias_latipes
ENSMEUG00000004395	SMARCAL1	100	52.045	ENSORLG00020001610	SMARCAL1	92	52.045	Oryzias_latipes_hni
ENSMEUG00000004395	SMARCAL1	100	52.159	ENSORLG00015001865	SMARCAL1	92	52.159	Oryzias_latipes_hsok
ENSMEUG00000004395	SMARCAL1	100	50.612	ENSOMEG00000001845	smarcal1	92	50.612	Oryzias_melastigma
ENSMEUG00000004395	SMARCAL1	78	59.798	ENSPMGG00000019092	SMARCAL1	71	63.133	Periophthalmus_magnuspinnatus
ENSMEUG00000004395	SMARCAL1	100	79.356	ENSPCIG00000022514	SMARCAL1	99	79.356	Phascolarctos_cinereus
ENSMEUG00000004395	SMARCAL1	74	62.844	ENSPFOG00000000560	SMARCAL1	93	52.144	Poecilia_formosa
ENSMEUG00000004395	SMARCAL1	74	62.691	ENSPMEG00000018146	SMARCAL1	93	51.977	Poecilia_mexicana
ENSMEUG00000004395	SMARCAL1	50	68.046	ENSPREG00000009591	SMARCAL1	79	68.046	Poecilia_reticulata
ENSMEUG00000004395	SMARCAL1	74	64.977	ENSPNAG00000014900	smarcal1	69	65.571	Pygocentrus_nattereri
ENSMEUG00000004395	SMARCAL1	100	69.820	ENSSHAG00000013538	SMARCAL1	93	69.820	Sarcophilus_harrisii
ENSMEUG00000004395	SMARCAL1	99	52.756	ENSSMAG00000010427	SMARCAL1	92	52.413	Scophthalmus_maximus
ENSMEUG00000004395	SMARCAL1	99	51.474	ENSSDUG00000017470	SMARCAL1	90	51.646	Seriola_dumerili
ENSMEUG00000004395	SMARCAL1	99	51.416	ENSSLDG00000007224	SMARCAL1	92	51.587	Seriola_lalandi_dorsalis
ENSMEUG00000004395	SMARCAL1	80	69.397	ENSSPUG00000015369	SMARCAL1	65	69.859	Sphenodon_punctatus
ENSMEUG00000004395	SMARCAL1	73	62.928	ENSSPAG00000003742	smarcal1	80	63.708	Stegastes_partitus
ENSMEUG00000004395	SMARCAL1	98	59.698	ENSSSCG00000035501	SMARCAL1	95	59.001	Sus_scrofa
ENSMEUG00000004395	SMARCAL1	73	69.352	ENSTGUG00000005079	SMARCAL1	93	69.502	Taeniopygia_guttata
ENSMEUG00000004395	SMARCAL1	73	59.459	ENSTRUG00000010701	SMARCAL1	70	59.806	Takifugu_rubripes
ENSMEUG00000004395	SMARCAL1	100	56.335	ENSTTRG00000009001	SMARCAL1	92	56.448	Tursiops_truncatus
ENSMEUG00000004395	SMARCAL1	100	57.384	ENSXETG00000000465	smarcal1	93	57.384	Xenopus_tropicalis