EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMEUG00000013229 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Notamacropus_eugenii
Status: putative
Strand: Minus strand
Length: 375 bases
Position: chrScaffold87274:8878-9252
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMEUP00000012062	LSM	PF01423.22	8.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMEUT00000013262	LSM4-201	375	-	ENSMEUP00000012062	124 (aa)	-	UPI0001B1F551

Gene Model

Click here to download ENSMEUG00000013229's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMEUG00000013229's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMEUG00000013229	LSM4	100	92.742	ENSG00000130520	LSM4	99	92.742	Homo_sapiens
ENSMEUG00000013229	LSM4	100	92.742	ENSAMEG00000011162	LSM4	85	92.742	Ailuropoda_melanoleuca
ENSMEUG00000013229	LSM4	100	92.742	ENSANAG00000034659	LSM4	99	92.742	Aotus_nancymaae
ENSMEUG00000013229	LSM4	77	77.982	ENSACLG00000022738	lsm4	50	95.890	Astatotilapia_calliptera
ENSMEUG00000013229	LSM4	98	78.049	ENSAMXG00000016932	lsm4	86	80.328	Astyanax_mexicanus
ENSMEUG00000013229	LSM4	100	92.742	ENSBTAG00000008578	LSM4	89	92.742	Bos_taurus
ENSMEUG00000013229	LSM4	55	72.059	WBGene00003078	lsm-4	55	72.059	Caenorhabditis_elegans
ENSMEUG00000013229	LSM4	100	92.742	ENSCJAG00000014171	LSM4	99	92.742	Callithrix_jacchus
ENSMEUG00000013229	LSM4	99	92.683	ENSCAFG00000014900	LSM4	80	92.683	Canis_familiaris
ENSMEUG00000013229	LSM4	100	92.742	ENSCAFG00020012137	LSM4	89	92.742	Canis_lupus_dingo
ENSMEUG00000013229	LSM4	100	92.742	ENSCHIG00000010928	LSM4	82	92.742	Capra_hircus
ENSMEUG00000013229	LSM4	100	91.935	ENSTSYG00000030906	LSM4	99	91.935	Carlito_syrichta
ENSMEUG00000013229	LSM4	100	90.323	ENSCAPG00000014140	LSM4	89	90.323	Cavia_aperea
ENSMEUG00000013229	LSM4	100	90.323	ENSCPOG00000024117	LSM4	89	90.323	Cavia_porcellus
ENSMEUG00000013229	LSM4	100	92.742	ENSCCAG00000036308	LSM4	99	92.742	Cebus_capucinus
ENSMEUG00000013229	LSM4	100	92.742	ENSCATG00000029311	LSM4	99	92.742	Cercocebus_atys
ENSMEUG00000013229	LSM4	100	89.516	ENSCLAG00000010828	LSM4	89	89.516	Chinchilla_lanigera
ENSMEUG00000013229	LSM4	100	92.742	ENSCSAG00000005370	LSM4	89	92.742	Chlorocebus_sabaeus
ENSMEUG00000013229	LSM4	100	78.226	ENSCPBG00000012925	LSM4	89	76.613	Chrysemys_picta_bellii
ENSMEUG00000013229	LSM4	57	88.732	ENSCING00000007519	-	57	89.041	Ciona_intestinalis
ENSMEUG00000013229	LSM4	57	90.141	ENSCSAVG00000008596	-	58	90.411	Ciona_savignyi
ENSMEUG00000013229	LSM4	100	92.742	ENSCANG00000043686	LSM4	99	92.742	Colobus_angolensis_palliatus
ENSMEUG00000013229	LSM4	100	89.516	ENSCGRG00001014436	Lsm4	89	89.516	Cricetulus_griseus_chok1gshd
ENSMEUG00000013229	LSM4	100	89.516	ENSCGRG00000009398	Lsm4	90	89.516	Cricetulus_griseus_crigri
ENSMEUG00000013229	LSM4	66	91.463	ENSCSEG00000016127	lsm4	51	94.521	Cynoglossus_semilaevis
ENSMEUG00000013229	LSM4	98	72.000	ENSCVAG00000010601	lsm4	51	94.521	Cyprinodon_variegatus
ENSMEUG00000013229	LSM4	98	72.000	ENSCVAG00000021828	lsm4	56	94.521	Cyprinodon_variegatus
ENSMEUG00000013229	LSM4	97	74.603	ENSDARG00000023852	lsm4	57	95.890	Danio_rerio
ENSMEUG00000013229	LSM4	100	91.129	ENSDORG00000024225	Lsm4	89	91.129	Dipodomys_ordii
ENSMEUG00000013229	LSM4	100	92.742	ENSETEG00000007762	-	100	92.742	Echinops_telfairi
ENSMEUG00000013229	LSM4	100	92.742	ENSECAG00000010141	LSM4	51	92.742	Equus_caballus
ENSMEUG00000013229	LSM4	95	80.000	ENSELUG00000012821	lsm4	55	95.890	Esox_lucius
ENSMEUG00000013229	LSM4	100	92.742	ENSFCAG00000040580	LSM4	99	92.742	Felis_catus
ENSMEUG00000013229	LSM4	100	77.419	ENSFALG00000009478	LSM4	89	75.806	Ficedula_albicollis
ENSMEUG00000013229	LSM4	100	90.323	ENSFDAG00000010124	LSM4	90	90.323	Fukomys_damarensis
ENSMEUG00000013229	LSM4	66	92.683	ENSGMOG00000007729	lsm4	50	95.890	Gadus_morhua
ENSMEUG00000013229	LSM4	100	77.419	ENSGALG00000003385	LSM4	89	75.806	Gallus_gallus
ENSMEUG00000013229	LSM4	77	77.064	ENSGAFG00000004903	lsm4	55	91.781	Gambusia_affinis
ENSMEUG00000013229	LSM4	100	78.226	ENSGAGG00000017812	LSM4	89	76.613	Gopherus_agassizii
ENSMEUG00000013229	LSM4	100	92.742	ENSGGOG00000012914	-	99	92.742	Gorilla_gorilla
ENSMEUG00000013229	LSM4	100	89.516	ENSHGLG00000006568	LSM4	89	89.516	Heterocephalus_glaber_female
ENSMEUG00000013229	LSM4	63	94.872	ENSHGLG00100007894	LSM4	78	95.890	Heterocephalus_glaber_male
ENSMEUG00000013229	LSM4	98	71.311	ENSHCOG00000008819	lsm4	51	95.890	Hippocampus_comes
ENSMEUG00000013229	LSM4	98	78.049	ENSIPUG00000005368	Lsm4	51	95.890	Ictalurus_punctatus
ENSMEUG00000013229	LSM4	100	92.742	ENSSTOG00000016494	LSM4	89	92.742	Ictidomys_tridecemlineatus
ENSMEUG00000013229	LSM4	100	89.516	ENSJJAG00000017420	Lsm4	89	89.516	Jaculus_jaculus
ENSMEUG00000013229	LSM4	57	94.366	ENSKMAG00000005073	lsm4	51	94.521	Kryptolebias_marmoratus
ENSMEUG00000013229	LSM4	98	79.508	ENSLACG00000015861	LSM4	87	79.508	Latimeria_chalumnae
ENSMEUG00000013229	LSM4	92	78.947	ENSLOCG00000002025	lsm4	86	81.967	Lepisosteus_oculatus
ENSMEUG00000013229	LSM4	100	92.742	ENSLAFG00000017459	LSM4	89	92.742	Loxodonta_africana
ENSMEUG00000013229	LSM4	100	92.742	ENSMFAG00000031194	LSM4	99	92.742	Macaca_fascicularis
ENSMEUG00000013229	LSM4	100	92.742	ENSMMUG00000004405	LSM4	99	92.742	Macaca_mulatta
ENSMEUG00000013229	LSM4	100	92.742	ENSMNEG00000042899	LSM4	99	92.742	Macaca_nemestrina
ENSMEUG00000013229	LSM4	100	92.742	ENSMLEG00000027948	LSM4	99	92.742	Mandrillus_leucophaeus
ENSMEUG00000013229	LSM4	98	74.797	ENSMAMG00000006190	lsm4	51	95.890	Mastacembelus_armatus
ENSMEUG00000013229	LSM4	77	77.982	ENSMZEG00005016420	lsm4	50	95.890	Maylandia_zebra
ENSMEUG00000013229	LSM4	100	79.200	ENSMGAG00000004976	LSM4	89	87.097	Meleagris_gallopavo
ENSMEUG00000013229	LSM4	100	91.935	ENSMICG00000000222	LSM4	99	91.935	Microcebus_murinus
ENSMEUG00000013229	LSM4	100	89.516	ENSMOCG00000020861	Lsm4	89	89.516	Microtus_ochrogaster
ENSMEUG00000013229	LSM4	100	94.355	ENSMODG00000015044	-	100	94.355	Monodelphis_domestica
ENSMEUG00000013229	LSM4	98	70.732	ENSMALG00000018159	lsm4	51	94.521	Monopterus_albus
ENSMEUG00000013229	LSM4	100	89.516	MGP_CAROLIEiJ_G0031158	Lsm4	89	89.516	Mus_caroli
ENSMEUG00000013229	LSM4	100	89.516	ENSMUSG00000031848	Lsm4	89	89.516	Mus_musculus
ENSMEUG00000013229	LSM4	100	89.516	MGP_PahariEiJ_G0021623	Lsm4	89	89.516	Mus_pahari
ENSMEUG00000013229	LSM4	100	89.516	MGP_SPRETEiJ_G0032276	Lsm4	89	89.516	Mus_spretus
ENSMEUG00000013229	LSM4	100	92.742	ENSMPUG00000015589	LSM4	89	92.742	Mustela_putorius_furo
ENSMEUG00000013229	LSM4	100	92.742	ENSMLUG00000004010	LSM4	89	92.742	Myotis_lucifugus
ENSMEUG00000013229	LSM4	100	89.516	ENSNGAG00000008644	Lsm4	93	89.516	Nannospalax_galili
ENSMEUG00000013229	LSM4	100	86.290	ENSOPRG00000005575	LSM4	100	77.419	Ochotona_princeps
ENSMEUG00000013229	LSM4	100	90.323	ENSODEG00000020549	-	89	90.323	Octodon_degus
ENSMEUG00000013229	LSM4	100	64.516	ENSODEG00000011712	-	86	64.516	Octodon_degus
ENSMEUG00000013229	LSM4	100	79.839	ENSODEG00000004519	-	89	81.452	Octodon_degus
ENSMEUG00000013229	LSM4	77	77.982	ENSONIG00000012724	lsm4	50	95.890	Oreochromis_niloticus
ENSMEUG00000013229	LSM4	59	95.890	ENSOANG00000007434	LSM4	63	95.890	Ornithorhynchus_anatinus
ENSMEUG00000013229	LSM4	100	72.800	ENSORLG00000008391	lsm4	51	94.521	Oryzias_latipes
ENSMEUG00000013229	LSM4	77	77.064	ENSORLG00020014829	lsm4	51	94.521	Oryzias_latipes_hni
ENSMEUG00000013229	LSM4	77	77.064	ENSORLG00015010205	lsm4	51	94.521	Oryzias_latipes_hsok
ENSMEUG00000013229	LSM4	100	72.800	ENSOMEG00000003606	lsm4	51	94.521	Oryzias_melastigma
ENSMEUG00000013229	LSM4	69	94.118	ENSOGAG00000027992	LSM4	50	95.890	Otolemur_garnettii
ENSMEUG00000013229	LSM4	59	95.890	ENSOARG00000012553	LSM4	93	92.373	Ovis_aries
ENSMEUG00000013229	LSM4	100	92.742	ENSPPAG00000044045	-	99	92.742	Pan_paniscus
ENSMEUG00000013229	LSM4	100	92.742	ENSPPRG00000018264	LSM4	99	92.742	Panthera_pardus
ENSMEUG00000013229	LSM4	100	92.742	ENSPTIG00000006306	LSM4	90	92.742	Panthera_tigris_altaica
ENSMEUG00000013229	LSM4	100	92.742	ENSPTRG00000031470	LSM4	99	92.742	Pan_troglodytes
ENSMEUG00000013229	LSM4	100	92.742	ENSPANG00000014399	LSM4	99	92.742	Papio_anubis
ENSMEUG00000013229	LSM4	98	77.049	ENSPKIG00000006154	lsm4	94	81.967	Paramormyrops_kingsleyae
ENSMEUG00000013229	LSM4	100	77.419	ENSPSIG00000012358	LSM4	90	75.806	Pelodiscus_sinensis
ENSMEUG00000013229	LSM4	100	89.516	ENSPEMG00000001358	Lsm4	89	89.516	Peromyscus_maniculatus_bairdii
ENSMEUG00000013229	LSM4	73	90.110	ENSPLAG00000016267	lsm4	51	95.890	Poecilia_latipinna
ENSMEUG00000013229	LSM4	98	73.600	ENSPMEG00000016378	lsm4	53	95.890	Poecilia_mexicana
ENSMEUG00000013229	LSM4	100	92.742	ENSPPYG00000009736	LSM4	89	92.742	Pongo_abelii
ENSMEUG00000013229	LSM4	100	92.742	ENSPCAG00000008513	LSM4	100	92.742	Procavia_capensis
ENSMEUG00000013229	LSM4	100	91.935	ENSPCOG00000019837	LSM4	99	91.935	Propithecus_coquereli
ENSMEUG00000013229	LSM4	100	92.742	ENSPVAG00000015383	LSM4	89	92.742	Pteropus_vampyrus
ENSMEUG00000013229	LSM4	77	77.982	ENSPNYG00000016794	lsm4	50	95.890	Pundamilia_nyererei
ENSMEUG00000013229	LSM4	96	78.333	ENSPNAG00000016598	lsm4	54	95.890	Pygocentrus_nattereri
ENSMEUG00000013229	LSM4	100	89.516	ENSRNOG00000019572	Lsm4	89	89.516	Rattus_norvegicus
ENSMEUG00000013229	LSM4	100	92.742	ENSRBIG00000024717	LSM4	99	92.742	Rhinopithecus_bieti
ENSMEUG00000013229	LSM4	100	92.742	ENSRROG00000045706	LSM4	99	92.742	Rhinopithecus_roxellana
ENSMEUG00000013229	LSM4	100	92.742	ENSSBOG00000022455	LSM4	99	92.742	Saimiri_boliviensis_boliviensis
ENSMEUG00000013229	LSM4	100	94.355	ENSSHAG00000011559	LSM4	89	94.355	Sarcophilus_harrisii
ENSMEUG00000013229	LSM4	98	75.410	ENSSFOG00015021067	lsm4	87	80.645	Scleropages_formosus
ENSMEUG00000013229	LSM4	100	92.742	ENSSSCG00000034314	LSM4	89	92.742	Sus_scrofa
ENSMEUG00000013229	LSM4	77	76.147	ENSTRUG00000021737	lsm4	51	93.151	Takifugu_rubripes
ENSMEUG00000013229	LSM4	98	75.200	ENSTNIG00000010191	lsm4	51	94.521	Tetraodon_nigroviridis
ENSMEUG00000013229	LSM4	100	92.742	ENSUAMG00000000665	LSM4	89	92.742	Ursus_americanus
ENSMEUG00000013229	LSM4	100	92.742	ENSUMAG00000009013	LSM4	89	92.742	Ursus_maritimus
ENSMEUG00000013229	LSM4	100	92.742	ENSVVUG00000008136	LSM4	64	92.742	Vulpes_vulpes
ENSMEUG00000013229	LSM4	100	87.903	ENSXETG00000024933	lsm4	89	87.903	Xenopus_tropicalis