EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMEUG00000013406 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Notamacropus_eugenii
Status: putative
Strand: Minus strand
Length: 9278 bases
Position: chrScaffold218:3902-13179
Accession: 604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMEUP00000012226	APOBEC_N	PF08210.11	5.6e-28	1	1
ENSMEUP00000012226	APOBEC_C	PF05240.14	2.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMEUT00000013446	APOBEC1-201	711	-	ENSMEUP00000012226	236 (aa)	-	UPI0001B21D4F

Gene Model

Click here to download ENSMEUG00000013406's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMEUG00000013406's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMEUG00000013406	APOBEC1	53	38.060	ENSMEUG00000006570	AICDA	65	38.060

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMEUG00000013406	APOBEC1	100	64.407	ENSG00000111701	APOBEC1	100	64.407	Homo_sapiens
ENSMEUG00000013406	APOBEC1	98	66.234	ENSAMEG00000007098	APOBEC1	98	66.234	Ailuropoda_melanoleuca
ENSMEUG00000013406	APOBEC1	72	41.520	ENSACAG00000028578	-	93	41.520	Anolis_carolinensis
ENSMEUG00000013406	APOBEC1	100	65.678	ENSANAG00000027743	APOBEC1	95	65.678	Aotus_nancymaae
ENSMEUG00000013406	APOBEC1	100	59.746	ENSBTAG00000014683	APOBEC1	100	59.746	Bos_taurus
ENSMEUG00000013406	APOBEC1	94	66.063	ENSCJAG00000005398	APOBEC1	100	66.063	Callithrix_jacchus
ENSMEUG00000013406	APOBEC1	100	65.678	ENSCAFG00000013901	APOBEC1	100	65.678	Canis_familiaris
ENSMEUG00000013406	APOBEC1	96	63.717	ENSCAFG00020003511	APOBEC1	95	63.717	Canis_lupus_dingo
ENSMEUG00000013406	APOBEC1	98	59.307	ENSCHIG00000011898	APOBEC1	96	59.307	Capra_hircus
ENSMEUG00000013406	APOBEC1	58	71.014	ENSTSYG00000029141	APOBEC1	98	71.014	Carlito_syrichta
ENSMEUG00000013406	APOBEC1	91	57.477	ENSCAPG00000015882	-	99	57.477	Cavia_aperea
ENSMEUG00000013406	APOBEC1	99	57.021	ENSCPOG00000033068	APOBEC1	99	57.021	Cavia_porcellus
ENSMEUG00000013406	APOBEC1	100	64.831	ENSCCAG00000022258	APOBEC1	100	64.831	Cebus_capucinus
ENSMEUG00000013406	APOBEC1	100	66.102	ENSCATG00000021613	APOBEC1	95	66.102	Cercocebus_atys
ENSMEUG00000013406	APOBEC1	97	58.952	ENSCLAG00000014645	APOBEC1	99	58.952	Chinchilla_lanigera
ENSMEUG00000013406	APOBEC1	81	64.737	ENSCSAG00000009817	APOBEC1	99	64.737	Chlorocebus_sabaeus
ENSMEUG00000013406	APOBEC1	82	41.709	ENSCPBG00000017398	-	88	41.709	Chrysemys_picta_bellii
ENSMEUG00000013406	APOBEC1	89	44.240	ENSCPBG00000014328	-	95	44.240	Chrysemys_picta_bellii
ENSMEUG00000013406	APOBEC1	83	46.939	ENSCPBG00000014329	-	54	46.939	Chrysemys_picta_bellii
ENSMEUG00000013406	APOBEC1	91	38.426	ENSCPBG00000014327	-	84	37.963	Chrysemys_picta_bellii
ENSMEUG00000013406	APOBEC1	78	45.455	ENSCPBG00000014331	-	77	45.455	Chrysemys_picta_bellii
ENSMEUG00000013406	APOBEC1	78	47.059	ENSCPBG00000014335	-	76	47.059	Chrysemys_picta_bellii
ENSMEUG00000013406	APOBEC1	97	66.087	ENSCANG00000038359	APOBEC1	100	66.087	Colobus_angolensis_palliatus
ENSMEUG00000013406	APOBEC1	97	61.135	ENSCGRG00001011130	Apobec1	100	61.135	Cricetulus_griseus_chok1gshd
ENSMEUG00000013406	APOBEC1	97	61.135	ENSCGRG00000008644	Apobec1	100	61.135	Cricetulus_griseus_crigri
ENSMEUG00000013406	APOBEC1	100	65.678	ENSDNOG00000010926	APOBEC1	100	65.678	Dasypus_novemcinctus
ENSMEUG00000013406	APOBEC1	90	56.542	ENSDORG00000023717	Apobec1	100	56.542	Dipodomys_ordii
ENSMEUG00000013406	APOBEC1	99	63.830	ENSETEG00000004867	APOBEC1	99	63.830	Echinops_telfairi
ENSMEUG00000013406	APOBEC1	98	67.532	ENSEASG00005015951	APOBEC1	97	67.532	Equus_asinus_asinus
ENSMEUG00000013406	APOBEC1	81	65.263	ENSECAG00000017163	APOBEC1	99	65.263	Equus_caballus
ENSMEUG00000013406	APOBEC1	93	55.656	ENSEEUG00000009112	-	98	55.656	Erinaceus_europaeus
ENSMEUG00000013406	APOBEC1	86	46.078	ENSEEUG00000007530	-	97	46.078	Erinaceus_europaeus
ENSMEUG00000013406	APOBEC1	100	67.797	ENSFCAG00000009350	APOBEC1	100	67.797	Felis_catus
ENSMEUG00000013406	APOBEC1	60	47.183	ENSFALG00000007257	-	70	47.183	Ficedula_albicollis
ENSMEUG00000013406	APOBEC1	88	49.758	ENSFDAG00000018470	APOBEC1	99	49.758	Fukomys_damarensis
ENSMEUG00000013406	APOBEC1	89	48.113	ENSGAGG00000011837	-	87	49.112	Gopherus_agassizii
ENSMEUG00000013406	APOBEC1	72	44.444	ENSGAGG00000006624	-	62	44.444	Gopherus_agassizii
ENSMEUG00000013406	APOBEC1	68	48.148	ENSGAGG00000004947	-	80	48.148	Gopherus_agassizii
ENSMEUG00000013406	APOBEC1	85	43.350	ENSGAGG00000021744	-	79	43.350	Gopherus_agassizii
ENSMEUG00000013406	APOBEC1	85	37.799	ENSGAGG00000021745	-	77	37.799	Gopherus_agassizii
ENSMEUG00000013406	APOBEC1	99	57.021	ENSHGLG00000001495	APOBEC1	99	57.021	Heterocephalus_glaber_female
ENSMEUG00000013406	APOBEC1	99	56.596	ENSHGLG00100002187	APOBEC1	99	56.596	Heterocephalus_glaber_male
ENSMEUG00000013406	APOBEC1	91	51.163	ENSSTOG00000021971	APOBEC1	100	74.490	Ictidomys_tridecemlineatus
ENSMEUG00000013406	APOBEC1	97	60.699	ENSJJAG00000022108	Apobec1	100	60.699	Jaculus_jaculus
ENSMEUG00000013406	APOBEC1	94	66.368	ENSLAFG00000030837	APOBEC1	100	66.368	Loxodonta_africana
ENSMEUG00000013406	APOBEC1	100	66.102	ENSMFAG00000000277	APOBEC1	100	66.102	Macaca_fascicularis
ENSMEUG00000013406	APOBEC1	100	66.525	ENSMNEG00000029670	APOBEC1	100	66.525	Macaca_nemestrina
ENSMEUG00000013406	APOBEC1	100	66.102	ENSMLEG00000036301	APOBEC1	100	66.102	Mandrillus_leucophaeus
ENSMEUG00000013406	APOBEC1	92	62.500	ENSMAUG00000022167	Apobec1	97	62.500	Mesocricetus_auratus
ENSMEUG00000013406	APOBEC1	100	65.254	ENSMICG00000043645	APOBEC1	100	65.254	Microcebus_murinus
ENSMEUG00000013406	APOBEC1	100	80.085	ENSMODG00000018004	APOBEC1	100	80.085	Monodelphis_domestica
ENSMEUG00000013406	APOBEC1	97	60.526	ENSMUSG00000040613	Apobec1	100	62.832	Mus_musculus
ENSMEUG00000013406	APOBEC1	97	60.526	MGP_PahariEiJ_G0022580	-	100	62.832	Mus_pahari
ENSMEUG00000013406	APOBEC1	97	60.526	MGP_SPRETEiJ_G0029857	Apobec1	100	62.832	Mus_spretus
ENSMEUG00000013406	APOBEC1	100	63.559	ENSMPUG00000017532	APOBEC1	100	63.559	Mustela_putorius_furo
ENSMEUG00000013406	APOBEC1	97	61.572	ENSNGAG00000022607	Apobec1	100	61.572	Nannospalax_galili
ENSMEUG00000013406	APOBEC1	100	65.254	ENSNLEG00000005342	APOBEC1	100	65.254	Nomascus_leucogenys
ENSMEUG00000013406	APOBEC1	77	56.354	ENSOPRG00000009508	-	100	56.354	Ochotona_princeps
ENSMEUG00000013406	APOBEC1	100	61.441	ENSOCUG00000025736	APOBEC1	88	61.441	Oryctolagus_cuniculus
ENSMEUG00000013406	APOBEC1	98	67.532	ENSOGAG00000026415	APOBEC1	98	67.532	Otolemur_garnettii
ENSMEUG00000013406	APOBEC1	100	59.746	ENSOARG00000002072	APOBEC1	99	59.746	Ovis_aries
ENSMEUG00000013406	APOBEC1	99	60.086	ENSPPAG00000027657	APOBEC1	99	60.086	Pan_paniscus
ENSMEUG00000013406	APOBEC1	100	67.797	ENSPPRG00000012182	APOBEC1	100	67.797	Panthera_pardus
ENSMEUG00000013406	APOBEC1	100	67.797	ENSPTIG00000020280	APOBEC1	100	67.797	Panthera_tigris_altaica
ENSMEUG00000013406	APOBEC1	100	64.831	ENSPTRG00000004614	APOBEC1	100	64.831	Pan_troglodytes
ENSMEUG00000013406	APOBEC1	100	66.102	ENSPANG00000021027	APOBEC1	100	66.102	Papio_anubis
ENSMEUG00000013406	APOBEC1	53	45.045	ENSPSIG00000012791	-	71	45.045	Pelodiscus_sinensis
ENSMEUG00000013406	APOBEC1	78	41.935	ENSPSIG00000012568	-	81	41.935	Pelodiscus_sinensis
ENSMEUG00000013406	APOBEC1	97	60.262	ENSPEMG00000023841	Apobec1	100	60.262	Peromyscus_maniculatus_bairdii
ENSMEUG00000013406	APOBEC1	100	87.288	ENSPCIG00000023973	APOBEC1	100	87.288	Phascolarctos_cinereus
ENSMEUG00000013406	APOBEC1	100	65.678	ENSPPYG00000004228	APOBEC1	95	65.678	Pongo_abelii
ENSMEUG00000013406	APOBEC1	79	66.310	ENSPCAG00000008733	APOBEC1	100	66.310	Procavia_capensis
ENSMEUG00000013406	APOBEC1	94	64.865	ENSPCOG00000013957	APOBEC1	98	64.865	Propithecus_coquereli
ENSMEUG00000013406	APOBEC1	100	53.814	ENSPVAG00000010709	APOBEC1	100	53.814	Pteropus_vampyrus
ENSMEUG00000013406	APOBEC1	97	58.772	ENSRNOG00000015411	Apobec1	99	58.772	Rattus_norvegicus
ENSMEUG00000013406	APOBEC1	100	65.678	ENSRBIG00000031161	APOBEC1	100	65.678	Rhinopithecus_bieti
ENSMEUG00000013406	APOBEC1	100	65.678	ENSRROG00000033576	APOBEC1	100	65.678	Rhinopithecus_roxellana
ENSMEUG00000013406	APOBEC1	73	68.208	ENSSBOG00000030587	APOBEC1	98	68.208	Saimiri_boliviensis_boliviensis
ENSMEUG00000013406	APOBEC1	96	84.581	ENSSHAG00000008925	APOBEC1	99	84.581	Sarcophilus_harrisii
ENSMEUG00000013406	APOBEC1	73	58.140	ENSSARG00000000032	-	100	58.140	Sorex_araneus
ENSMEUG00000013406	APOBEC1	56	62.879	ENSSARG00000011972	-	100	62.879	Sorex_araneus
ENSMEUG00000013406	APOBEC1	90	43.721	ENSSPUG00000009044	-	82	43.721	Sphenodon_punctatus
ENSMEUG00000013406	APOBEC1	100	61.864	ENSSSCG00000000668	APOBEC1	100	61.864	Sus_scrofa
ENSMEUG00000013406	APOBEC1	61	45.833	ENSTGUG00000013118	-	99	45.833	Taeniopygia_guttata
ENSMEUG00000013406	APOBEC1	94	62.443	ENSTBEG00000010043	APOBEC1	94	62.443	Tupaia_belangeri
ENSMEUG00000013406	APOBEC1	79	63.102	ENSTTRG00000014015	APOBEC1	100	63.102	Tursiops_truncatus
ENSMEUG00000013406	APOBEC1	98	66.234	ENSUAMG00000011636	APOBEC1	95	66.234	Ursus_americanus
ENSMEUG00000013406	APOBEC1	98	66.234	ENSUMAG00000016552	APOBEC1	95	66.234	Ursus_maritimus
ENSMEUG00000013406	APOBEC1	100	61.864	ENSVPAG00000001343	APOBEC1	100	61.864	Vicugna_pacos
ENSMEUG00000013406	APOBEC1	100	65.678	ENSVVUG00000010522	APOBEC1	100	65.678	Vulpes_vulpes