EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMEUG00000014077 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Notamacropus_eugenii
Status: putative
Strand: Minus strand
Length: 11556 bases
Position: chrGeneScaffold_8306:675-12230
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMEUP00000012830	LSM	PF01423.22	9.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMEUT00000014112	LSM1-201	402	-	ENSMEUP00000012830	133 (aa)	-	UPI00005E75EB

Gene Model

Click here to download ENSMEUG00000014077's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMEUG00000014077's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMEUG00000014077	LSM1	100	97.744	ENSG00000175324	LSM1	100	97.744	Homo_sapiens
ENSMEUG00000014077	LSM1	100	86.466	ENSAPOG00000010833	lsm1	100	86.466	Acanthochromis_polyacanthus
ENSMEUG00000014077	LSM1	100	97.744	ENSAMEG00000011141	LSM1	100	97.744	Ailuropoda_melanoleuca
ENSMEUG00000014077	LSM1	58	93.506	ENSACIG00000019593	lsm1	64	93.506	Amphilophus_citrinellus
ENSMEUG00000014077	LSM1	100	86.466	ENSAOCG00000017997	-	100	86.466	Amphiprion_ocellaris
ENSMEUG00000014077	LSM1	100	86.466	ENSAOCG00000017096	lsm1	100	86.466	Amphiprion_ocellaris
ENSMEUG00000014077	LSM1	100	86.466	ENSAPEG00000011669	lsm1	100	86.466	Amphiprion_percula
ENSMEUG00000014077	LSM1	100	84.962	ENSATEG00000022266	lsm1	100	84.962	Anabas_testudineus
ENSMEUG00000014077	LSM1	100	97.744	ENSANAG00000027785	LSM1	100	97.744	Aotus_nancymaae
ENSMEUG00000014077	LSM1	100	84.962	ENSACLG00000011400	lsm1	100	84.962	Astatotilapia_calliptera
ENSMEUG00000014077	LSM1	100	87.970	ENSAMXG00000005441	lsm1	100	87.970	Astyanax_mexicanus
ENSMEUG00000014077	LSM1	100	96.992	ENSBTAG00000001612	LSM1	100	96.992	Bos_taurus
ENSMEUG00000014077	LSM1	87	51.695	WBGene00003076	lsm-1	90	51.695	Caenorhabditis_elegans
ENSMEUG00000014077	LSM1	100	96.992	ENSCJAG00000048015	LSM1	100	96.992	Callithrix_jacchus
ENSMEUG00000014077	LSM1	100	97.744	ENSCAFG00000006113	LSM1	100	97.744	Canis_familiaris
ENSMEUG00000014077	LSM1	100	97.744	ENSCAFG00020001822	LSM1	100	97.744	Canis_lupus_dingo
ENSMEUG00000014077	LSM1	100	97.744	ENSCHIG00000013194	LSM1	100	97.744	Capra_hircus
ENSMEUG00000014077	LSM1	100	97.744	ENSTSYG00000010394	LSM1	100	97.744	Carlito_syrichta
ENSMEUG00000014077	LSM1	100	97.744	ENSCPOG00000032671	LSM1	100	97.744	Cavia_porcellus
ENSMEUG00000014077	LSM1	100	97.744	ENSCCAG00000037171	LSM1	100	97.744	Cebus_capucinus
ENSMEUG00000014077	LSM1	100	97.744	ENSCATG00000020377	LSM1	100	97.744	Cercocebus_atys
ENSMEUG00000014077	LSM1	100	96.241	ENSCLAG00000001137	LSM1	100	96.241	Chinchilla_lanigera
ENSMEUG00000014077	LSM1	100	97.744	ENSCSAG00000015485	LSM1	100	97.744	Chlorocebus_sabaeus
ENSMEUG00000014077	LSM1	100	96.992	ENSCHOG00000006030	LSM1	100	96.992	Choloepus_hoffmanni
ENSMEUG00000014077	LSM1	95	91.339	ENSCPBG00000006569	LSM1	86	91.339	Chrysemys_picta_bellii
ENSMEUG00000014077	LSM1	99	69.697	ENSCING00000013536	-	99	69.697	Ciona_intestinalis
ENSMEUG00000014077	LSM1	100	97.744	ENSCANG00000019173	LSM1	100	97.744	Colobus_angolensis_palliatus
ENSMEUG00000014077	LSM1	100	96.992	ENSCGRG00001024560	-	100	96.992	Cricetulus_griseus_chok1gshd
ENSMEUG00000014077	LSM1	80	80.180	ENSCGRG00001002259	-	97	80.180	Cricetulus_griseus_chok1gshd
ENSMEUG00000014077	LSM1	80	80.180	ENSCGRG00000013603	-	97	80.180	Cricetulus_griseus_crigri
ENSMEUG00000014077	LSM1	100	96.992	ENSCGRG00000006554	-	100	96.992	Cricetulus_griseus_crigri
ENSMEUG00000014077	LSM1	100	84.211	ENSCSEG00000010570	lsm1	92	84.211	Cynoglossus_semilaevis
ENSMEUG00000014077	LSM1	100	83.459	ENSCSEG00000008319	lsm1	92	83.459	Cynoglossus_semilaevis
ENSMEUG00000014077	LSM1	100	84.211	ENSCVAG00000003871	lsm1	100	84.211	Cyprinodon_variegatus
ENSMEUG00000014077	LSM1	100	87.218	ENSDARG00000043177	lsm1	100	87.218	Danio_rerio
ENSMEUG00000014077	LSM1	100	96.992	ENSDNOG00000032911	-	100	96.992	Dasypus_novemcinctus
ENSMEUG00000014077	LSM1	100	91.729	ENSDNOG00000030989	-	100	91.729	Dasypus_novemcinctus
ENSMEUG00000014077	LSM1	89	77.311	ENSDNOG00000046620	-	100	77.311	Dasypus_novemcinctus
ENSMEUG00000014077	LSM1	100	97.744	ENSDNOG00000046387	-	100	97.744	Dasypus_novemcinctus
ENSMEUG00000014077	LSM1	100	97.744	ENSDORG00000028172	Lsm1	100	97.744	Dipodomys_ordii
ENSMEUG00000014077	LSM1	93	66.129	FBgn0261067	LSm1	91	66.129	Drosophila_melanogaster
ENSMEUG00000014077	LSM1	100	96.241	ENSEASG00005016677	LSM1	100	96.241	Equus_asinus_asinus
ENSMEUG00000014077	LSM1	100	96.241	ENSECAG00000010461	LSM1	100	96.241	Equus_caballus
ENSMEUG00000014077	LSM1	100	69.173	ENSEEUG00000015181	LSM1	100	69.173	Erinaceus_europaeus
ENSMEUG00000014077	LSM1	100	85.714	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
ENSMEUG00000014077	LSM1	100	83.459	ENSELUG00000023374	lsm1	100	83.459	Esox_lucius
ENSMEUG00000014077	LSM1	100	97.744	ENSFCAG00000039335	LSM1	100	97.744	Felis_catus
ENSMEUG00000014077	LSM1	89	95.763	ENSFALG00000006723	LSM1	100	95.763	Ficedula_albicollis
ENSMEUG00000014077	LSM1	100	97.744	ENSFDAG00000007658	LSM1	100	97.744	Fukomys_damarensis
ENSMEUG00000014077	LSM1	100	84.211	ENSFHEG00000009556	lsm1	100	84.211	Fundulus_heteroclitus
ENSMEUG00000014077	LSM1	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSMEUG00000014077	LSM1	100	93.985	ENSGALG00000003245	LSM1	100	93.985	Gallus_gallus
ENSMEUG00000014077	LSM1	100	84.211	ENSGAFG00000011355	lsm1	100	84.211	Gambusia_affinis
ENSMEUG00000014077	LSM1	100	84.962	ENSGACG00000011763	lsm1	98	84.962	Gasterosteus_aculeatus
ENSMEUG00000014077	LSM1	100	97.744	ENSGAGG00000024065	LSM1	100	97.744	Gopherus_agassizii
ENSMEUG00000014077	LSM1	100	97.744	ENSGGOG00000022658	LSM1	100	97.744	Gorilla_gorilla
ENSMEUG00000014077	LSM1	100	84.962	ENSHBUG00000010897	lsm1	100	84.962	Haplochromis_burtoni
ENSMEUG00000014077	LSM1	100	77.444	ENSHGLG00000017574	-	100	77.444	Heterocephalus_glaber_female
ENSMEUG00000014077	LSM1	100	97.744	ENSHGLG00000005711	LSM1	100	97.744	Heterocephalus_glaber_female
ENSMEUG00000014077	LSM1	100	97.744	ENSHGLG00100017660	LSM1	100	97.744	Heterocephalus_glaber_male
ENSMEUG00000014077	LSM1	100	77.444	ENSHGLG00100012152	-	100	77.444	Heterocephalus_glaber_male
ENSMEUG00000014077	LSM1	100	84.962	ENSHCOG00000017233	lsm1	100	84.962	Hippocampus_comes
ENSMEUG00000014077	LSM1	100	86.466	ENSIPUG00000002312	LSM1	100	86.466	Ictalurus_punctatus
ENSMEUG00000014077	LSM1	58	98.701	ENSSTOG00000026870	LSM1	94	98.701	Ictidomys_tridecemlineatus
ENSMEUG00000014077	LSM1	100	96.241	ENSJJAG00000014605	-	100	96.241	Jaculus_jaculus
ENSMEUG00000014077	LSM1	100	84.962	ENSKMAG00000003016	lsm1	100	84.962	Kryptolebias_marmoratus
ENSMEUG00000014077	LSM1	100	84.962	ENSLBEG00000022352	lsm1	100	84.962	Labrus_bergylta
ENSMEUG00000014077	LSM1	89	91.525	ENSLACG00000010947	LSM1	98	91.525	Latimeria_chalumnae
ENSMEUG00000014077	LSM1	100	93.985	ENSLOCG00000015149	lsm1	100	93.985	Lepisosteus_oculatus
ENSMEUG00000014077	LSM1	100	97.744	ENSLAFG00000003534	LSM1	100	97.744	Loxodonta_africana
ENSMEUG00000014077	LSM1	100	97.744	ENSMFAG00000032661	LSM1	100	97.744	Macaca_fascicularis
ENSMEUG00000014077	LSM1	100	97.744	ENSMLEG00000034535	LSM1	100	97.744	Mandrillus_leucophaeus
ENSMEUG00000014077	LSM1	100	84.962	ENSMAMG00000007464	lsm1	100	84.962	Mastacembelus_armatus
ENSMEUG00000014077	LSM1	100	84.962	ENSMZEG00005010321	lsm1	100	84.962	Maylandia_zebra
ENSMEUG00000014077	LSM1	100	93.985	ENSMGAG00000002125	LSM1	100	93.985	Meleagris_gallopavo
ENSMEUG00000014077	LSM1	100	96.992	ENSMICG00000030726	LSM1	100	96.992	Microcebus_murinus
ENSMEUG00000014077	LSM1	100	96.992	ENSMOCG00000022817	Lsm1	100	96.992	Microtus_ochrogaster
ENSMEUG00000014077	LSM1	100	85.714	ENSMMOG00000015466	lsm1	100	85.714	Mola_mola
ENSMEUG00000014077	LSM1	100	100.000	ENSMODG00000010732	-	100	100.000	Monodelphis_domestica
ENSMEUG00000014077	LSM1	58	93.506	ENSMALG00000001478	lsm1	82	93.506	Monopterus_albus
ENSMEUG00000014077	LSM1	100	95.489	MGP_CAROLIEiJ_G0030930	Lsm1	100	95.489	Mus_caroli
ENSMEUG00000014077	LSM1	100	95.489	ENSMUSG00000037296	Lsm1	100	95.489	Mus_musculus
ENSMEUG00000014077	LSM1	100	95.489	MGP_PahariEiJ_G0021400	Lsm1	100	95.489	Mus_pahari
ENSMEUG00000014077	LSM1	100	95.489	MGP_SPRETEiJ_G0032049	Lsm1	100	95.489	Mus_spretus
ENSMEUG00000014077	LSM1	100	98.496	ENSMPUG00000009883	LSM1	100	98.496	Mustela_putorius_furo
ENSMEUG00000014077	LSM1	100	96.992	ENSMLUG00000003734	LSM1	100	96.992	Myotis_lucifugus
ENSMEUG00000014077	LSM1	100	96.992	ENSNGAG00000003753	Lsm1	100	96.992	Nannospalax_galili
ENSMEUG00000014077	LSM1	58	93.506	ENSNBRG00000017370	lsm1	66	93.506	Neolamprologus_brichardi
ENSMEUG00000014077	LSM1	100	97.744	ENSNLEG00000029390	LSM1	100	97.744	Nomascus_leucogenys
ENSMEUG00000014077	LSM1	88	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSMEUG00000014077	LSM1	100	97.744	ENSODEG00000004834	LSM1	100	97.744	Octodon_degus
ENSMEUG00000014077	LSM1	100	84.962	ENSONIG00000010782	lsm1	100	84.962	Oreochromis_niloticus
ENSMEUG00000014077	LSM1	100	99.248	ENSOANG00000003256	LSM1	100	99.248	Ornithorhynchus_anatinus
ENSMEUG00000014077	LSM1	100	97.744	ENSOCUG00000015399	LSM1	100	97.744	Oryctolagus_cuniculus
ENSMEUG00000014077	LSM1	100	86.466	ENSORLG00000030288	lsm1	100	86.466	Oryzias_latipes
ENSMEUG00000014077	LSM1	100	84.962	ENSORLG00020006213	-	86	84.962	Oryzias_latipes_hni
ENSMEUG00000014077	LSM1	100	86.466	ENSORLG00020003941	lsm1	100	86.466	Oryzias_latipes_hni
ENSMEUG00000014077	LSM1	100	86.466	ENSORLG00015018350	lsm1	100	86.466	Oryzias_latipes_hsok
ENSMEUG00000014077	LSM1	100	84.962	ENSOMEG00000012454	lsm1	100	84.962	Oryzias_melastigma
ENSMEUG00000014077	LSM1	100	97.744	ENSOGAG00000015161	LSM1	100	97.744	Otolemur_garnettii
ENSMEUG00000014077	LSM1	100	97.744	ENSOARG00000001317	LSM1	100	97.744	Ovis_aries
ENSMEUG00000014077	LSM1	100	97.744	ENSPPAG00000032279	LSM1	100	97.744	Pan_paniscus
ENSMEUG00000014077	LSM1	100	97.744	ENSPPRG00000014172	-	100	97.744	Panthera_pardus
ENSMEUG00000014077	LSM1	100	97.744	ENSPTIG00000010289	LSM1	100	97.744	Panthera_tigris_altaica
ENSMEUG00000014077	LSM1	100	97.744	ENSPTRG00000020169	LSM1	100	97.744	Pan_troglodytes
ENSMEUG00000014077	LSM1	100	97.744	ENSPANG00000008814	LSM1	100	97.744	Papio_anubis
ENSMEUG00000014077	LSM1	100	83.459	ENSPKIG00000019409	LSM1	99	83.459	Paramormyrops_kingsleyae
ENSMEUG00000014077	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSMEUG00000014077	LSM1	98	91.538	ENSPSIG00000012563	LSM1	99	91.538	Pelodiscus_sinensis
ENSMEUG00000014077	LSM1	58	93.506	ENSPMGG00000022999	lsm1	73	93.506	Periophthalmus_magnuspinnatus
ENSMEUG00000014077	LSM1	85	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSMEUG00000014077	LSM1	100	98.496	ENSPCIG00000008880	LSM1	100	98.496	Phascolarctos_cinereus
ENSMEUG00000014077	LSM1	100	84.211	ENSPFOG00000016029	lsm1	100	84.211	Poecilia_formosa
ENSMEUG00000014077	LSM1	100	84.211	ENSPLAG00000007879	lsm1	100	84.211	Poecilia_latipinna
ENSMEUG00000014077	LSM1	100	84.211	ENSPMEG00000023550	lsm1	100	84.211	Poecilia_mexicana
ENSMEUG00000014077	LSM1	100	84.211	ENSPREG00000009574	lsm1	100	84.211	Poecilia_reticulata
ENSMEUG00000014077	LSM1	100	97.744	ENSPPYG00000018521	LSM1	100	97.744	Pongo_abelii
ENSMEUG00000014077	LSM1	100	97.744	ENSPCOG00000020901	-	100	97.744	Propithecus_coquereli
ENSMEUG00000014077	LSM1	100	97.744	ENSPVAG00000006016	LSM1	100	97.744	Pteropus_vampyrus
ENSMEUG00000014077	LSM1	100	84.962	ENSPNYG00000018067	lsm1	100	84.962	Pundamilia_nyererei
ENSMEUG00000014077	LSM1	100	87.218	ENSPNAG00000013707	lsm1	100	87.218	Pygocentrus_nattereri
ENSMEUG00000014077	LSM1	100	95.489	ENSRNOG00000015375	Lsm1	100	95.489	Rattus_norvegicus
ENSMEUG00000014077	LSM1	100	97.744	ENSRBIG00000027449	LSM1	100	97.744	Rhinopithecus_bieti
ENSMEUG00000014077	LSM1	100	97.744	ENSRROG00000036074	LSM1	100	97.744	Rhinopithecus_roxellana
ENSMEUG00000014077	LSM1	83	45.299	YJL124C	LSM1	67	45.299	Saccharomyces_cerevisiae
ENSMEUG00000014077	LSM1	100	100.000	ENSSHAG00000017260	LSM1	100	100.000	Sarcophilus_harrisii
ENSMEUG00000014077	LSM1	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSMEUG00000014077	LSM1	100	84.962	ENSSMAG00000004930	lsm1	100	84.962	Scophthalmus_maximus
ENSMEUG00000014077	LSM1	100	84.962	ENSSDUG00000021823	lsm1	100	84.962	Seriola_dumerili
ENSMEUG00000014077	LSM1	100	84.962	ENSSLDG00000012154	lsm1	100	84.962	Seriola_lalandi_dorsalis
ENSMEUG00000014077	LSM1	100	97.744	ENSSPUG00000014878	LSM1	100	97.744	Sphenodon_punctatus
ENSMEUG00000014077	LSM1	100	85.714	ENSSPAG00000020548	lsm1	100	85.714	Stegastes_partitus
ENSMEUG00000014077	LSM1	100	96.241	ENSSSCG00000039058	LSM1	100	96.241	Sus_scrofa
ENSMEUG00000014077	LSM1	100	96.992	ENSTGUG00000004793	LSM1	100	96.992	Taeniopygia_guttata
ENSMEUG00000014077	LSM1	100	87.218	ENSTRUG00000025239	lsm1	100	87.218	Takifugu_rubripes
ENSMEUG00000014077	LSM1	100	87.218	ENSTNIG00000004055	lsm1	100	87.218	Tetraodon_nigroviridis
ENSMEUG00000014077	LSM1	88	95.726	ENSTBEG00000015884	LSM1	100	95.726	Tupaia_belangeri
ENSMEUG00000014077	LSM1	100	97.744	ENSTTRG00000004482	LSM1	100	97.744	Tursiops_truncatus
ENSMEUG00000014077	LSM1	100	97.744	ENSUAMG00000004103	LSM1	100	97.744	Ursus_americanus
ENSMEUG00000014077	LSM1	100	97.744	ENSUMAG00000009132	LSM1	100	97.744	Ursus_maritimus
ENSMEUG00000014077	LSM1	58	97.403	ENSVPAG00000011593	LSM1	100	97.403	Vicugna_pacos
ENSMEUG00000014077	LSM1	65	68.605	ENSVVUG00000014880	-	91	68.605	Vulpes_vulpes
ENSMEUG00000014077	LSM1	100	97.744	ENSVVUG00000020191	LSM1	100	97.744	Vulpes_vulpes
ENSMEUG00000014077	LSM1	100	94.161	ENSXETG00000009004	lsm1	100	94.161	Xenopus_tropicalis
ENSMEUG00000014077	LSM1	100	83.459	ENSXCOG00000015631	lsm1	100	83.459	Xiphophorus_couchianus
ENSMEUG00000014077	LSM1	100	83.459	ENSXMAG00000026637	lsm1	100	83.459	Xiphophorus_maculatus