EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMEUG00000015615 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Notamacropus_eugenii
Status: putative
Strand: Minus strand
Length: 14006 bases
Position: chrGeneScaffold_3689:2993-16998
Accession: 20439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMEUP00000014259	Smg4_UPF3	PF03467.15	2.7e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMEUT00000015661	UPF3B-201	1161	-	ENSMEUP00000014259	387 (aa)	-	UPI0001B1FD17

Gene Model

Click here to download ENSMEUG00000015615's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMEUG00000015615's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMEUG00000015615	UPF3B	81	83.974	ENSG00000125351	UPF3B	71	83.871	Homo_sapiens
ENSMEUG00000015615	UPF3B	81	80.380	ENSAPOG00000012775	upf3b	68	80.645	Acanthochromis_polyacanthus
ENSMEUG00000015615	UPF3B	81	84.615	ENSAMEG00000000163	UPF3B	65	84.516	Ailuropoda_melanoleuca
ENSMEUG00000015615	UPF3B	81	80.380	ENSATEG00000018742	upf3b	68	80.645	Anabas_testudineus
ENSMEUG00000015615	UPF3B	81	73.077	ENSACAG00000001540	UPF3A	74	73.548	Anolis_carolinensis
ENSMEUG00000015615	UPF3B	81	92.258	ENSACAG00000003625	UPF3B	66	92.258	Anolis_carolinensis
ENSMEUG00000015615	UPF3B	81	83.974	ENSANAG00000021894	-	72	83.871	Aotus_nancymaae
ENSMEUG00000015615	UPF3B	81	76.923	ENSANAG00000025598	-	66	76.774	Aotus_nancymaae
ENSMEUG00000015615	UPF3B	81	83.333	ENSCJAG00000004975	UPF3B	72	83.226	Callithrix_jacchus
ENSMEUG00000015615	UPF3B	81	84.615	ENSCAFG00000018426	UPF3B	67	84.516	Canis_familiaris
ENSMEUG00000015615	UPF3B	80	79.470	ENSCAFG00020004074	UPF3B	59	87.692	Canis_lupus_dingo
ENSMEUG00000015615	UPF3B	79	62.712	ENSCHIG00000011454	-	64	63.226	Capra_hircus
ENSMEUG00000015615	UPF3B	81	84.615	ENSCHIG00000000247	-	64	84.516	Capra_hircus
ENSMEUG00000015615	UPF3B	81	84.615	ENSCHIG00000018011	-	65	84.516	Capra_hircus
ENSMEUG00000015615	UPF3B	81	84.615	ENSTSYG00000014690	UPF3B	71	84.516	Carlito_syrichta
ENSMEUG00000015615	UPF3B	81	83.974	ENSCATG00000017506	UPF3B	72	83.871	Cercocebus_atys
ENSMEUG00000015615	UPF3B	81	83.333	ENSCLAG00000003260	UPF3B	65	83.226	Chinchilla_lanigera
ENSMEUG00000015615	UPF3B	81	83.974	ENSCSAG00000018348	UPF3B	64	83.871	Chlorocebus_sabaeus
ENSMEUG00000015615	UPF3B	79	92.568	ENSCPBG00000020685	UPF3B	67	92.568	Chrysemys_picta_bellii
ENSMEUG00000015615	UPF3B	81	82.692	ENSCGRG00001006858	-	66	82.581	Cricetulus_griseus_chok1gshd
ENSMEUG00000015615	UPF3B	56	82.692	ENSCGRG00001013643	-	64	82.581	Cricetulus_griseus_chok1gshd
ENSMEUG00000015615	UPF3B	81	82.692	ENSCGRG00000007627	Upf3b	74	82.581	Cricetulus_griseus_crigri
ENSMEUG00000015615	UPF3B	81	78.481	ENSCSEG00000002046	upf3b	65	78.710	Cynoglossus_semilaevis
ENSMEUG00000015615	UPF3B	81	83.974	ENSDNOG00000008665	UPF3B	64	83.871	Dasypus_novemcinctus
ENSMEUG00000015615	UPF3B	81	82.051	ENSDORG00000006077	Upf3b	65	81.935	Dipodomys_ordii
ENSMEUG00000015615	UPF3B	81	53.846	ENSETEG00000010110	UPF3A	64	54.194	Echinops_telfairi
ENSMEUG00000015615	UPF3B	81	84.615	ENSEASG00005012919	UPF3B	66	84.516	Equus_asinus_asinus
ENSMEUG00000015615	UPF3B	81	84.615	ENSECAG00000016947	UPF3B	66	84.516	Equus_caballus
ENSMEUG00000015615	UPF3B	81	84.615	ENSFCAG00000004388	UPF3B	65	84.516	Felis_catus
ENSMEUG00000015615	UPF3B	81	94.872	ENSFALG00000001569	UPF3B	62	94.839	Ficedula_albicollis
ENSMEUG00000015615	UPF3B	81	83.974	ENSFDAG00000018869	UPF3B	65	83.871	Fukomys_damarensis
ENSMEUG00000015615	UPF3B	74	92.903	ENSGALG00000008618	UPF3B	65	92.903	Gallus_gallus
ENSMEUG00000015615	UPF3B	81	95.484	ENSGAGG00000001219	UPF3B	67	95.484	Gopherus_agassizii
ENSMEUG00000015615	UPF3B	81	83.974	ENSGGOG00000023995	UPF3B	65	83.871	Gorilla_gorilla
ENSMEUG00000015615	UPF3B	81	82.692	ENSHGLG00000019582	-	65	82.581	Heterocephalus_glaber_female
ENSMEUG00000015615	UPF3B	74	75.484	ENSHGLG00000011189	-	67	75.484	Heterocephalus_glaber_female
ENSMEUG00000015615	UPF3B	81	82.692	ENSHGLG00100002042	-	64	82.581	Heterocephalus_glaber_male
ENSMEUG00000015615	UPF3B	74	75.484	ENSHGLG00100001889	-	67	75.484	Heterocephalus_glaber_male
ENSMEUG00000015615	UPF3B	81	81.013	ENSHCOG00000017004	upf3b	68	81.290	Hippocampus_comes
ENSMEUG00000015615	UPF3B	81	83.333	ENSSTOG00000001101	UPF3B	65	83.226	Ictidomys_tridecemlineatus
ENSMEUG00000015615	UPF3B	81	82.692	ENSJJAG00000000053	Upf3b	65	82.581	Jaculus_jaculus
ENSMEUG00000015615	UPF3B	73	35.192	ENSLACG00000006645	UPF3A	61	74.510	Latimeria_chalumnae
ENSMEUG00000015615	UPF3B	78	64.972	ENSLAFG00000023358	UPF3A	68	71.613	Loxodonta_africana
ENSMEUG00000015615	UPF3B	81	83.333	ENSLAFG00000001267	UPF3B	65	83.226	Loxodonta_africana
ENSMEUG00000015615	UPF3B	81	83.974	ENSMFAG00000045414	UPF3B	72	83.871	Macaca_fascicularis
ENSMEUG00000015615	UPF3B	81	83.974	ENSMMUG00000020222	UPF3B	72	83.871	Macaca_mulatta
ENSMEUG00000015615	UPF3B	81	83.974	ENSMNEG00000039794	UPF3B	72	83.871	Macaca_nemestrina
ENSMEUG00000015615	UPF3B	81	83.974	ENSMLEG00000010999	UPF3B	72	83.871	Mandrillus_leucophaeus
ENSMEUG00000015615	UPF3B	66	88.333	ENSMGAG00000007728	UPF3B	71	88.333	Meleagris_gallopavo
ENSMEUG00000015615	UPF3B	77	72.222	ENSMGAG00000014837	UPF3A	72	73.188	Meleagris_gallopavo
ENSMEUG00000015615	UPF3B	81	80.769	ENSMAUG00000008705	Upf3b	66	80.645	Mesocricetus_auratus
ENSMEUG00000015615	UPF3B	81	82.692	ENSMOCG00000017893	Upf3b	64	82.581	Microtus_ochrogaster
ENSMEUG00000015615	UPF3B	81	72.436	ENSMODG00000003159	UPF3A	72	72.903	Monodelphis_domestica
ENSMEUG00000015615	UPF3B	100	83.979	ENSMODG00000010232	UPF3B	88	83.979	Monodelphis_domestica
ENSMEUG00000015615	UPF3B	81	83.333	MGP_CAROLIEiJ_G0032999	Upf3b	71	80.488	Mus_caroli
ENSMEUG00000015615	UPF3B	81	83.333	ENSMUSG00000036572	Upf3b	71	80.488	Mus_musculus
ENSMEUG00000015615	UPF3B	81	83.333	MGP_PahariEiJ_G0031543	Upf3b	71	80.488	Mus_pahari
ENSMEUG00000015615	UPF3B	81	83.333	MGP_SPRETEiJ_G0034152	Upf3b	71	80.488	Mus_spretus
ENSMEUG00000015615	UPF3B	81	84.615	ENSMPUG00000001531	UPF3B	67	84.516	Mustela_putorius_furo
ENSMEUG00000015615	UPF3B	81	84.615	ENSMLUG00000010821	UPF3B	65	84.516	Myotis_lucifugus
ENSMEUG00000015615	UPF3B	78	83.333	ENSNGAG00000008231	Upf3b	65	83.226	Nannospalax_galili
ENSMEUG00000015615	UPF3B	81	83.974	ENSNLEG00000014897	UPF3B	65	83.871	Nomascus_leucogenys
ENSMEUG00000015615	UPF3B	71	83.974	ENSODEG00000002186	-	65	83.871	Octodon_degus
ENSMEUG00000015615	UPF3B	81	55.128	ENSOANG00000006985	-	79	55.484	Ornithorhynchus_anatinus
ENSMEUG00000015615	UPF3B	100	69.744	ENSOANG00000002594	-	73	94.194	Ornithorhynchus_anatinus
ENSMEUG00000015615	UPF3B	81	83.974	ENSOCUG00000010213	UPF3B	64	83.871	Oryctolagus_cuniculus
ENSMEUG00000015615	UPF3B	81	83.333	ENSOGAG00000004643	-	65	83.226	Otolemur_garnettii
ENSMEUG00000015615	UPF3B	81	77.564	ENSOGAG00000033003	-	67	77.564	Otolemur_garnettii
ENSMEUG00000015615	UPF3B	81	83.019	ENSOARG00000016051	-	64	82.911	Ovis_aries
ENSMEUG00000015615	UPF3B	79	69.492	ENSOARG00000007869	-	73	70.968	Ovis_aries
ENSMEUG00000015615	UPF3B	81	83.974	ENSPPAG00000040390	UPF3B	65	83.871	Pan_paniscus
ENSMEUG00000015615	UPF3B	81	84.615	ENSPPRG00000023536	UPF3B	65	84.516	Panthera_pardus
ENSMEUG00000015615	UPF3B	81	84.615	ENSPTIG00000015264	UPF3B	66	84.516	Panthera_tigris_altaica
ENSMEUG00000015615	UPF3B	81	83.974	ENSPTRG00000022228	UPF3B	65	83.871	Pan_troglodytes
ENSMEUG00000015615	UPF3B	81	83.974	ENSPANG00000000900	UPF3B	72	83.871	Papio_anubis
ENSMEUG00000015615	UPF3B	81	79.747	ENSPKIG00000019226	upf3b	67	81.731	Paramormyrops_kingsleyae
ENSMEUG00000015615	UPF3B	81	73.077	ENSPSIG00000007468	UPF3A	75	73.548	Pelodiscus_sinensis
ENSMEUG00000015615	UPF3B	51	95.652	ENSPSIG00000005833	UPF3B	72	95.652	Pelodiscus_sinensis
ENSMEUG00000015615	UPF3B	81	82.051	ENSPEMG00000012352	Upf3b	66	81.935	Peromyscus_maniculatus_bairdii
ENSMEUG00000015615	UPF3B	79	98.089	ENSPCIG00000028914	UPF3B	66	98.089	Phascolarctos_cinereus
ENSMEUG00000015615	UPF3B	81	83.333	ENSPCAG00000009464	UPF3B	64	83.226	Procavia_capensis
ENSMEUG00000015615	UPF3B	81	83.974	ENSPCOG00000021960	UPF3B	65	83.871	Propithecus_coquereli
ENSMEUG00000015615	UPF3B	73	68.000	ENSPVAG00000014075	UPF3B	58	68.000	Pteropus_vampyrus
ENSMEUG00000015615	UPF3B	81	78.846	ENSPNAG00000021528	upf3b	69	78.710	Pygocentrus_nattereri
ENSMEUG00000015615	UPF3B	81	83.333	ENSRNOG00000039994	Upf3b	65	83.226	Rattus_norvegicus
ENSMEUG00000015615	UPF3B	72	82.787	ENSRBIG00000037219	UPF3B	71	82.645	Rhinopithecus_bieti
ENSMEUG00000015615	UPF3B	81	83.974	ENSRROG00000041031	UPF3B	72	83.871	Rhinopithecus_roxellana
ENSMEUG00000015615	UPF3B	81	83.974	ENSSBOG00000019740	UPF3B	74	83.871	Saimiri_boliviensis_boliviensis
ENSMEUG00000015615	UPF3B	81	72.436	ENSSHAG00000009895	UPF3A	73	72.903	Sarcophilus_harrisii
ENSMEUG00000015615	UPF3B	100	85.271	ENSSHAG00000008634	UPF3B	78	85.271	Sarcophilus_harrisii
ENSMEUG00000015615	UPF3B	81	82.692	ENSSFOG00015005614	upf3b	69	82.581	Scleropages_formosus
ENSMEUG00000015615	UPF3B	81	83.333	ENSSARG00000004147	UPF3B	71	83.226	Sorex_araneus
ENSMEUG00000015615	UPF3B	77	91.549	ENSSPUG00000013082	UPF3B	63	91.549	Sphenodon_punctatus
ENSMEUG00000015615	UPF3B	81	84.615	ENSSSCG00000012617	UPF3B	65	84.516	Sus_scrofa
ENSMEUG00000015615	UPF3B	81	72.436	ENSTGUG00000009493	UPF3A	78	72.903	Taeniopygia_guttata
ENSMEUG00000015615	UPF3B	81	94.839	ENSTGUG00000003413	UPF3B	73	94.839	Taeniopygia_guttata
ENSMEUG00000015615	UPF3B	75	77.215	ENSTRUG00000010645	upf3b	73	77.419	Takifugu_rubripes
ENSMEUG00000015615	UPF3B	75	75.000	ENSTNIG00000015763	upf3b	73	75.159	Tetraodon_nigroviridis
ENSMEUG00000015615	UPF3B	71	64.744	ENSTBEG00000003229	UPF3B	55	64.516	Tupaia_belangeri
ENSMEUG00000015615	UPF3B	79	80.795	ENSUAMG00000024565	UPF3B	65	80.795	Ursus_americanus
ENSMEUG00000015615	UPF3B	80	79.470	ENSUMAG00000002150	UPF3B	66	79.470	Ursus_maritimus
ENSMEUG00000015615	UPF3B	75	83.704	ENSVPAG00000009971	UPF3B	70	83.582	Vicugna_pacos
ENSMEUG00000015615	UPF3B	80	79.470	ENSVVUG00000011594	UPF3B	72	84.516	Vulpes_vulpes
ENSMEUG00000015615	UPF3B	82	85.535	ENSXETG00000007440	upf3b	69	86.452	Xenopus_tropicalis
ENSMEUG00000015615	UPF3B	100	44.162	ENSXETG00000002572	upf3a	71	74.194	Xenopus_tropicalis