EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMFAG00000000277 (Gene tree)
Gene ID: 102146028
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Minus strand
Length: 10123 bases
Position: chr11:8081887-8092009
Accession: 102146028
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000045083	APOBEC_N	PF08210.11	6.8e-28	1	1
ENSMFAP00000045081	APOBEC_N	PF08210.11	2.1e-27	1	1
ENSMFAP00000045081	APOBEC_C	PF05240.14	2.1e-23	1	1
ENSMFAP00000045083	APOBEC_C	PF05240.14	2.1e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000019384	APOBEC1-202	1109	XM_005570020	ENSMFAP00000045083	236 (aa)	XP_005570077	A0A2K5X6I0
ENSMFAT00000019382	APOBEC1-201	1682	XM_015430324	ENSMFAP00000045081	191 (aa)	XP_015285810	A0A2K5X6Y4

Gene Model

Click here to download ENSMFAG00000000277's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000000277's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMFAG00000000277	APOBEC1	63	43.243	ENSMFAG00000004037	APOBEC3F	61	43.243
ENSMFAG00000000277	APOBEC1	54	32.381	ENSMFAG00000031827	APOBEC3H	66	30.303
ENSMFAG00000000277	APOBEC1	51	37.755	ENSMFAG00000037834	AICDA	58	37.647

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000000277	APOBEC1	100	94.068	ENSG00000111701	APOBEC1	100	94.068	Homo_sapiens
ENSMFAG00000000277	APOBEC1	99	81.053	ENSAMEG00000007098	APOBEC1	98	80.519	Ailuropoda_melanoleuca
ENSMFAG00000000277	APOBEC1	72	39.181	ENSACAG00000028578	-	93	39.181	Anolis_carolinensis
ENSMFAG00000000277	APOBEC1	98	93.617	ENSANAG00000027743	APOBEC1	95	91.525	Aotus_nancymaae
ENSMFAG00000000277	APOBEC1	98	76.596	ENSBTAG00000014683	APOBEC1	100	74.576	Bos_taurus
ENSMFAG00000000277	APOBEC1	100	91.099	ENSCJAG00000005398	APOBEC1	100	90.045	Callithrix_jacchus
ENSMFAG00000000277	APOBEC1	100	79.661	ENSCAFG00000013901	APOBEC1	100	79.661	Canis_familiaris
ENSMFAG00000000277	APOBEC1	99	80.526	ENSCAFG00020003511	APOBEC1	95	79.204	Canis_lupus_dingo
ENSMFAG00000000277	APOBEC1	99	77.368	ENSCHIG00000011898	APOBEC1	96	75.758	Capra_hircus
ENSMFAG00000000277	APOBEC1	60	83.688	ENSTSYG00000029141	APOBEC1	100	83.688	Carlito_syrichta
ENSMFAG00000000277	APOBEC1	96	71.038	ENSCAPG00000015882	-	99	70.093	Cavia_aperea
ENSMFAG00000000277	APOBEC1	99	68.783	ENSCPOG00000033068	APOBEC1	99	68.511	Cavia_porcellus
ENSMFAG00000000277	APOBEC1	100	94.764	ENSCCAG00000022258	APOBEC1	100	93.220	Cebus_capucinus
ENSMFAG00000000277	APOBEC1	100	99.153	ENSCATG00000021613	APOBEC1	95	99.153	Cercocebus_atys
ENSMFAG00000000277	APOBEC1	97	71.179	ENSCLAG00000014645	APOBEC1	99	71.179	Chinchilla_lanigera
ENSMFAG00000000277	APOBEC1	100	97.382	ENSCSAG00000009817	APOBEC1	100	97.382	Chlorocebus_sabaeus
ENSMFAG00000000277	APOBEC1	57	79.630	ENSCHOG00000002355	-	89	79.630	Choloepus_hoffmanni
ENSMFAG00000000277	APOBEC1	94	42.222	ENSCPBG00000014331	-	90	42.222	Chrysemys_picta_bellii
ENSMFAG00000000277	APOBEC1	78	46.524	ENSCPBG00000014335	-	76	46.524	Chrysemys_picta_bellii
ENSMFAG00000000277	APOBEC1	87	47.024	ENSCPBG00000014327	-	81	38.967	Chrysemys_picta_bellii
ENSMFAG00000000277	APOBEC1	85	49.080	ENSCPBG00000014329	-	54	50.000	Chrysemys_picta_bellii
ENSMFAG00000000277	APOBEC1	87	45.833	ENSCPBG00000014328	-	82	47.340	Chrysemys_picta_bellii
ENSMFAG00000000277	APOBEC1	77	45.455	ENSCPBG00000017398	-	82	45.455	Chrysemys_picta_bellii
ENSMFAG00000000277	APOBEC1	100	97.382	ENSCANG00000038359	APOBEC1	100	97.826	Colobus_angolensis_palliatus
ENSMFAG00000000277	APOBEC1	97	71.179	ENSCGRG00001011130	Apobec1	100	71.179	Cricetulus_griseus_chok1gshd
ENSMFAG00000000277	APOBEC1	97	71.179	ENSCGRG00000008644	Apobec1	100	71.179	Cricetulus_griseus_crigri
ENSMFAG00000000277	APOBEC1	100	81.356	ENSDNOG00000010926	APOBEC1	100	81.356	Dasypus_novemcinctus
ENSMFAG00000000277	APOBEC1	95	66.120	ENSDORG00000023717	Apobec1	100	66.355	Dipodomys_ordii
ENSMFAG00000000277	APOBEC1	99	79.574	ENSETEG00000004867	APOBEC1	99	79.574	Echinops_telfairi
ENSMFAG00000000277	APOBEC1	100	84.293	ENSEASG00005015951	APOBEC1	97	83.550	Equus_asinus_asinus
ENSMFAG00000000277	APOBEC1	100	84.293	ENSECAG00000017163	APOBEC1	100	84.293	Equus_caballus
ENSMFAG00000000277	APOBEC1	91	52.023	ENSEEUG00000007530	-	97	54.412	Erinaceus_europaeus
ENSMFAG00000000277	APOBEC1	98	65.608	ENSEEUG00000009112	-	98	65.611	Erinaceus_europaeus
ENSMFAG00000000277	APOBEC1	100	83.051	ENSFCAG00000009350	APOBEC1	100	83.051	Felis_catus
ENSMFAG00000000277	APOBEC1	57	51.376	ENSFALG00000007257	-	70	47.183	Ficedula_albicollis
ENSMFAG00000000277	APOBEC1	99	61.376	ENSFDAG00000018470	APOBEC1	99	61.353	Fukomys_damarensis
ENSMFAG00000000277	APOBEC1	73	50.704	ENSGAGG00000004947	-	83	53.383	Gopherus_agassizii
ENSMFAG00000000277	APOBEC1	86	47.024	ENSGAGG00000006624	-	70	46.000	Gopherus_agassizii
ENSMFAG00000000277	APOBEC1	79	47.333	ENSGAGG00000021744	-	71	46.448	Gopherus_agassizii
ENSMFAG00000000277	APOBEC1	92	46.119	ENSGAGG00000011837	-	88	52.500	Gopherus_agassizii
ENSMFAG00000000277	APOBEC1	72	43.503	ENSGAGG00000021745	-	64	43.503	Gopherus_agassizii
ENSMFAG00000000277	APOBEC1	99	66.809	ENSHGLG00000001495	APOBEC1	99	66.809	Heterocephalus_glaber_female
ENSMFAG00000000277	APOBEC1	99	66.667	ENSHGLG00100002187	APOBEC1	99	65.957	Heterocephalus_glaber_male
ENSMFAG00000000277	APOBEC1	96	63.043	ENSSTOG00000021971	APOBEC1	100	79.592	Ictidomys_tridecemlineatus
ENSMFAG00000000277	APOBEC1	97	75.109	ENSJJAG00000022108	Apobec1	100	75.109	Jaculus_jaculus
ENSMFAG00000000277	APOBEC1	99	78.947	ENSLAFG00000030837	APOBEC1	100	78.924	Loxodonta_africana
ENSMFAG00000000277	APOBEC1	100	99.576	ENSMNEG00000029670	APOBEC1	100	99.576	Macaca_nemestrina
ENSMFAG00000000277	APOBEC1	100	99.153	ENSMLEG00000036301	APOBEC1	100	99.153	Mandrillus_leucophaeus
ENSMFAG00000000277	APOBEC1	95	72.376	ENSMAUG00000022167	Apobec1	97	71.759	Mesocricetus_auratus
ENSMFAG00000000277	APOBEC1	100	84.322	ENSMICG00000043645	APOBEC1	100	84.322	Microcebus_murinus
ENSMFAG00000000277	APOBEC1	100	67.797	ENSMODG00000018004	APOBEC1	100	67.797	Monodelphis_domestica
ENSMFAG00000000277	APOBEC1	97	70.614	ENSMUSG00000040613	Apobec1	99	70.614	Mus_musculus
ENSMFAG00000000277	APOBEC1	97	69.298	MGP_PahariEiJ_G0022580	-	99	69.298	Mus_pahari
ENSMFAG00000000277	APOBEC1	97	70.614	MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	Mus_spretus
ENSMFAG00000000277	APOBEC1	100	78.390	ENSMPUG00000017532	APOBEC1	100	78.390	Mustela_putorius_furo
ENSMFAG00000000277	APOBEC1	95	74.586	ENSNGAG00000022607	Apobec1	100	72.489	Nannospalax_galili
ENSMFAG00000000277	APOBEC1	100	95.763	ENSNLEG00000005342	APOBEC1	100	95.763	Nomascus_leucogenys
ENSMFAG00000000277	APOBEC1	100	66.102	ENSMEUG00000013406	APOBEC1	100	66.102	Notamacropus_eugenii
ENSMFAG00000000277	APOBEC1	77	65.193	ENSOPRG00000009508	-	100	65.193	Ochotona_princeps
ENSMFAG00000000277	APOBEC1	100	77.966	ENSOCUG00000025736	APOBEC1	88	77.966	Oryctolagus_cuniculus
ENSMFAG00000000277	APOBEC1	99	80.526	ENSOGAG00000026415	APOBEC1	98	81.385	Otolemur_garnettii
ENSMFAG00000000277	APOBEC1	99	76.316	ENSOARG00000002072	APOBEC1	99	74.153	Ovis_aries
ENSMFAG00000000277	APOBEC1	98	87.013	ENSPPAG00000027657	APOBEC1	98	87.013	Pan_paniscus
ENSMFAG00000000277	APOBEC1	100	82.627	ENSPPRG00000012182	APOBEC1	100	82.627	Panthera_pardus
ENSMFAG00000000277	APOBEC1	100	82.627	ENSPTIG00000020280	APOBEC1	100	82.627	Panthera_tigris_altaica
ENSMFAG00000000277	APOBEC1	100	94.492	ENSPTRG00000004614	APOBEC1	100	94.492	Pan_troglodytes
ENSMFAG00000000277	APOBEC1	100	99.153	ENSPANG00000021027	APOBEC1	100	99.153	Papio_anubis
ENSMFAG00000000277	APOBEC1	99	41.702	ENSPSIG00000012568	-	99	41.702	Pelodiscus_sinensis
ENSMFAG00000000277	APOBEC1	73	49.541	ENSPSIG00000012791	-	76	49.541	Pelodiscus_sinensis
ENSMFAG00000000277	APOBEC1	97	69.432	ENSPEMG00000023841	Apobec1	100	69.432	Peromyscus_maniculatus_bairdii
ENSMFAG00000000277	APOBEC1	100	69.068	ENSPCIG00000023973	APOBEC1	100	69.068	Phascolarctos_cinereus
ENSMFAG00000000277	APOBEC1	100	94.241	ENSPPYG00000004228	APOBEC1	95	94.068	Pongo_abelii
ENSMFAG00000000277	APOBEC1	79	81.283	ENSPCAG00000008733	APOBEC1	100	81.283	Procavia_capensis
ENSMFAG00000000277	APOBEC1	99	85.263	ENSPCOG00000013957	APOBEC1	100	82.203	Propithecus_coquereli
ENSMFAG00000000277	APOBEC1	100	65.678	ENSPVAG00000010709	APOBEC1	100	65.678	Pteropus_vampyrus
ENSMFAG00000000277	APOBEC1	97	68.860	ENSRNOG00000015411	Apobec1	99	68.860	Rattus_norvegicus
ENSMFAG00000000277	APOBEC1	100	97.034	ENSRBIG00000031161	APOBEC1	100	97.034	Rhinopithecus_bieti
ENSMFAG00000000277	APOBEC1	100	96.610	ENSRROG00000033576	APOBEC1	100	96.610	Rhinopithecus_roxellana
ENSMFAG00000000277	APOBEC1	74	93.662	ENSSBOG00000030587	APOBEC1	98	92.486	Saimiri_boliviensis_boliviensis
ENSMFAG00000000277	APOBEC1	99	69.474	ENSSHAG00000008925	APOBEC1	99	70.044	Sarcophilus_harrisii
ENSMFAG00000000277	APOBEC1	72	69.343	ENSSARG00000000032	-	100	68.023	Sorex_araneus
ENSMFAG00000000277	APOBEC1	56	72.519	ENSSARG00000011972	-	99	72.519	Sorex_araneus
ENSMFAG00000000277	APOBEC1	88	40.566	ENSSPUG00000009044	-	81	40.566	Sphenodon_punctatus
ENSMFAG00000000277	APOBEC1	99	80.000	ENSSSCG00000000668	APOBEC1	100	78.390	Sus_scrofa
ENSMFAG00000000277	APOBEC1	58	54.955	ENSTGUG00000013118	-	99	50.694	Taeniopygia_guttata
ENSMFAG00000000277	APOBEC1	99	77.368	ENSTBEG00000010043	APOBEC1	94	77.376	Tupaia_belangeri
ENSMFAG00000000277	APOBEC1	79	76.471	ENSTTRG00000014015	APOBEC1	100	76.471	Tursiops_truncatus
ENSMFAG00000000277	APOBEC1	99	80.526	ENSUAMG00000011636	APOBEC1	95	80.087	Ursus_americanus
ENSMFAG00000000277	APOBEC1	99	80.526	ENSUMAG00000016552	APOBEC1	95	80.087	Ursus_maritimus
ENSMFAG00000000277	APOBEC1	100	76.271	ENSVPAG00000001343	APOBEC1	100	76.271	Vicugna_pacos
ENSMFAG00000000277	APOBEC1	99	81.579	ENSVVUG00000010522	APOBEC1	100	80.508	Vulpes_vulpes