EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMFAG00000003394 (Gene tree)
Gene ID: 102121820
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Minus strand
Length: 249622 bases
Position: chr16:1964391-2214012
Accession: 102121820
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000033800	EST1	PF10374.9	5.6e-15	1	1
ENSMFAP00000033800	EST1_DNA_bind	PF10373.9	5.4e-61	1	1
ENSMFAP00000033800	PIN_4	PF13638.6	1.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000008028	SMG6-201	5927	XM_005582468	ENSMFAP00000033800	1419 (aa)	XP_005582525	A0A2K5W9N0

Gene Model

Click here to download ENSMFAG00000003394's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000003394's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000003394	SMG6	100	97.040	ENSG00000070366	SMG6	100	99.217	Homo_sapiens
ENSMFAG00000003394	SMG6	83	54.894	ENSAPOG00000019448	smg6	74	55.070	Acanthochromis_polyacanthus
ENSMFAG00000003394	SMG6	100	93.587	ENSAMEG00000007632	SMG6	100	93.587	Ailuropoda_melanoleuca
ENSMFAG00000003394	SMG6	71	59.762	ENSAOCG00000002630	smg6	74	55.312	Amphiprion_ocellaris
ENSMFAG00000003394	SMG6	71	59.762	ENSAPEG00000019101	smg6	74	55.391	Amphiprion_percula
ENSMFAG00000003394	SMG6	83	55.199	ENSATEG00000006483	smg6	73	55.089	Anabas_testudineus
ENSMFAG00000003394	SMG6	87	58.031	ENSACAG00000011783	SMG6	99	59.355	Anolis_carolinensis
ENSMFAG00000003394	SMG6	100	96.054	ENSANAG00000035760	SMG6	100	96.054	Aotus_nancymaae
ENSMFAG00000003394	SMG6	71	59.447	ENSACLG00000005288	smg6	86	53.218	Astatotilapia_calliptera
ENSMFAG00000003394	SMG6	73	61.349	ENSAMXG00000017326	smg6	99	50.794	Astyanax_mexicanus
ENSMFAG00000003394	SMG6	100	93.517	ENSBTAG00000000267	SMG6	100	93.517	Bos_taurus
ENSMFAG00000003394	SMG6	100	95.490	ENSCJAG00000001820	SMG6	100	95.490	Callithrix_jacchus
ENSMFAG00000003394	SMG6	100	93.517	ENSCAFG00000019260	SMG6	100	93.517	Canis_familiaris
ENSMFAG00000003394	SMG6	100	93.517	ENSCAFG00020009770	SMG6	100	93.517	Canis_lupus_dingo
ENSMFAG00000003394	SMG6	100	93.376	ENSCHIG00000021998	SMG6	100	93.376	Capra_hircus
ENSMFAG00000003394	SMG6	100	93.658	ENSTSYG00000003406	SMG6	100	97.065	Carlito_syrichta
ENSMFAG00000003394	SMG6	98	77.266	ENSCAPG00000016197	SMG6	99	82.670	Cavia_aperea
ENSMFAG00000003394	SMG6	100	90.775	ENSCPOG00000014878	SMG6	100	90.775	Cavia_porcellus
ENSMFAG00000003394	SMG6	100	95.983	ENSCCAG00000035801	SMG6	100	95.983	Cebus_capucinus
ENSMFAG00000003394	SMG6	100	99.154	ENSCATG00000031956	SMG6	100	99.154	Cercocebus_atys
ENSMFAG00000003394	SMG6	100	92.459	ENSCLAG00000006748	SMG6	100	92.459	Chinchilla_lanigera
ENSMFAG00000003394	SMG6	100	99.507	ENSCSAG00000013800	SMG6	100	99.507	Chlorocebus_sabaeus
ENSMFAG00000003394	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSMFAG00000003394	SMG6	100	72.399	ENSCPBG00000020369	SMG6	100	72.954	Chrysemys_picta_bellii
ENSMFAG00000003394	SMG6	98	98.920	ENSCANG00000031764	SMG6	100	100.000	Colobus_angolensis_palliatus
ENSMFAG00000003394	SMG6	55	88.107	ENSCGRG00001019595	Smg6	98	88.107	Cricetulus_griseus_chok1gshd
ENSMFAG00000003394	SMG6	98	84.942	ENSCGRG00000007782	Smg6	100	85.086	Cricetulus_griseus_crigri
ENSMFAG00000003394	SMG6	87	53.620	ENSCSEG00000012757	smg6	83	52.500	Cynoglossus_semilaevis
ENSMFAG00000003394	SMG6	74	56.830	ENSCVAG00000012789	smg6	74	53.496	Cyprinodon_variegatus
ENSMFAG00000003394	SMG6	98	55.208	ENSDARG00000100481	smg6	90	56.651	Danio_rerio
ENSMFAG00000003394	SMG6	100	93.023	ENSDNOG00000048283	SMG6	100	93.023	Dasypus_novemcinctus
ENSMFAG00000003394	SMG6	100	89.193	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSMFAG00000003394	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSMFAG00000003394	SMG6	73	47.553	ENSEBUG00000005059	smg6	66	49.855	Eptatretus_burgeri
ENSMFAG00000003394	SMG6	99	94.143	ENSEASG00005009318	SMG6	99	94.143	Equus_asinus_asinus
ENSMFAG00000003394	SMG6	99	93.860	ENSECAG00000006519	SMG6	99	93.860	Equus_caballus
ENSMFAG00000003394	SMG6	100	82.100	ENSEEUG00000003493	SMG6	100	82.100	Erinaceus_europaeus
ENSMFAG00000003394	SMG6	71	60.370	ENSELUG00000005934	smg6	69	55.471	Esox_lucius
ENSMFAG00000003394	SMG6	100	94.362	ENSFCAG00000028817	SMG6	100	94.362	Felis_catus
ENSMFAG00000003394	SMG6	98	71.815	ENSFALG00000006538	SMG6	100	71.886	Ficedula_albicollis
ENSMFAG00000003394	SMG6	100	92.319	ENSFDAG00000015106	SMG6	100	92.319	Fukomys_damarensis
ENSMFAG00000003394	SMG6	83	53.307	ENSFHEG00000013282	smg6	75	53.463	Fundulus_heteroclitus
ENSMFAG00000003394	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSMFAG00000003394	SMG6	100	71.914	ENSGALG00000003108	SMG6	98	72.053	Gallus_gallus
ENSMFAG00000003394	SMG6	83	53.997	ENSGAFG00000000379	smg6	74	54.304	Gambusia_affinis
ENSMFAG00000003394	SMG6	91	54.056	ENSGACG00000020521	smg6	100	53.761	Gasterosteus_aculeatus
ENSMFAG00000003394	SMG6	98	72.057	ENSGAGG00000025617	SMG6	100	72.624	Gopherus_agassizii
ENSMFAG00000003394	SMG6	100	98.238	ENSGGOG00000017156	SMG6	100	98.238	Gorilla_gorilla
ENSMFAG00000003394	SMG6	88	53.086	ENSHBUG00000021311	smg6	80	53.299	Haplochromis_burtoni
ENSMFAG00000003394	SMG6	100	91.977	ENSHGLG00000012882	SMG6	100	91.977	Heterocephalus_glaber_female
ENSMFAG00000003394	SMG6	100	92.048	ENSHGLG00100017815	SMG6	100	92.048	Heterocephalus_glaber_male
ENSMFAG00000003394	SMG6	71	59.065	ENSHCOG00000008761	smg6	83	59.009	Hippocampus_comes
ENSMFAG00000003394	SMG6	83	55.582	ENSIPUG00000012493	smg6	75	54.894	Ictalurus_punctatus
ENSMFAG00000003394	SMG6	100	94.080	ENSSTOG00000028127	SMG6	100	94.080	Ictidomys_tridecemlineatus
ENSMFAG00000003394	SMG6	79	88.849	ENSJJAG00000015367	Smg6	95	86.915	Jaculus_jaculus
ENSMFAG00000003394	SMG6	73	59.425	ENSKMAG00000000279	smg6	91	49.004	Kryptolebias_marmoratus
ENSMFAG00000003394	SMG6	55	58.974	ENSLACG00000000806	-	98	59.417	Latimeria_chalumnae
ENSMFAG00000003394	SMG6	73	65.575	ENSLOCG00000006448	smg6	100	55.301	Lepisosteus_oculatus
ENSMFAG00000003394	SMG6	100	92.741	ENSLAFG00000001261	SMG6	100	92.741	Loxodonta_africana
ENSMFAG00000003394	SMG6	100	99.789	ENSMMUG00000023161	SMG6	100	99.789	Macaca_mulatta
ENSMFAG00000003394	SMG6	100	94.589	ENSMNEG00000044592	SMG6	100	94.589	Macaca_nemestrina
ENSMFAG00000003394	SMG6	98	97.116	ENSMLEG00000029353	SMG6	100	100.000	Mandrillus_leucophaeus
ENSMFAG00000003394	SMG6	83	56.216	ENSMAMG00000020119	smg6	98	49.710	Mastacembelus_armatus
ENSMFAG00000003394	SMG6	71	59.467	ENSMZEG00005024736	smg6	80	53.377	Maylandia_zebra
ENSMFAG00000003394	SMG6	73	66.509	ENSMGAG00000005401	-	99	66.509	Meleagris_gallopavo
ENSMFAG00000003394	SMG6	100	95.208	ENSMICG00000012913	SMG6	100	95.208	Microcebus_murinus
ENSMFAG00000003394	SMG6	100	47.703	ENSMMOG00000010883	smg6	100	47.913	Mola_mola
ENSMFAG00000003394	SMG6	100	86.217	ENSMODG00000010622	SMG6	100	86.217	Monodelphis_domestica
ENSMFAG00000003394	SMG6	83	54.779	ENSMALG00000001106	smg6	73	55.280	Monopterus_albus
ENSMFAG00000003394	SMG6	100	91.684	MGP_CAROLIEiJ_G0016729	Smg6	100	91.684	Mus_caroli
ENSMFAG00000003394	SMG6	100	91.473	ENSMUSG00000038290	Smg6	100	91.473	Mus_musculus
ENSMFAG00000003394	SMG6	100	91.191	MGP_PahariEiJ_G0017866	Smg6	100	91.191	Mus_pahari
ENSMFAG00000003394	SMG6	100	91.473	MGP_SPRETEiJ_G0017572	Smg6	100	91.473	Mus_spretus
ENSMFAG00000003394	SMG6	100	93.587	ENSMPUG00000013046	SMG6	100	93.587	Mustela_putorius_furo
ENSMFAG00000003394	SMG6	100	93.164	ENSMLUG00000005739	SMG6	100	93.164	Myotis_lucifugus
ENSMFAG00000003394	SMG6	98	90.641	ENSNGAG00000007287	Smg6	100	90.641	Nannospalax_galili
ENSMFAG00000003394	SMG6	88	52.506	ENSNBRG00000009511	smg6	87	52.869	Neolamprologus_brichardi
ENSMFAG00000003394	SMG6	98	97.633	ENSNLEG00000017171	SMG6	100	99.413	Nomascus_leucogenys
ENSMFAG00000003394	SMG6	98	82.615	ENSMEUG00000015804	SMG6	100	82.615	Notamacropus_eugenii
ENSMFAG00000003394	SMG6	62	90.950	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSMFAG00000003394	SMG6	100	85.644	ENSODEG00000008038	SMG6	100	84.469	Octodon_degus
ENSMFAG00000003394	SMG6	100	51.138	ENSONIG00000005594	smg6	100	52.099	Oreochromis_niloticus
ENSMFAG00000003394	SMG6	100	93.244	ENSOCUG00000013018	SMG6	100	93.385	Oryctolagus_cuniculus
ENSMFAG00000003394	SMG6	83	54.724	ENSORLG00000003317	smg6	74	54.945	Oryzias_latipes
ENSMFAG00000003394	SMG6	83	54.653	ENSORLG00020015343	smg6	74	54.481	Oryzias_latipes_hni
ENSMFAG00000003394	SMG6	83	54.603	ENSORLG00015020454	smg6	74	54.745	Oryzias_latipes_hsok
ENSMFAG00000003394	SMG6	83	53.695	ENSOMEG00000010838	smg6	75	54.137	Oryzias_melastigma
ENSMFAG00000003394	SMG6	100	94.577	ENSOGAG00000004483	SMG6	100	94.577	Otolemur_garnettii
ENSMFAG00000003394	SMG6	100	91.620	ENSOARG00000015076	SMG6	100	93.213	Ovis_aries
ENSMFAG00000003394	SMG6	100	97.956	ENSPPAG00000043296	SMG6	100	97.956	Pan_paniscus
ENSMFAG00000003394	SMG6	100	94.433	ENSPPRG00000014581	SMG6	100	94.433	Panthera_pardus
ENSMFAG00000003394	SMG6	98	94.513	ENSPTIG00000008925	SMG6	100	97.260	Panthera_tigris_altaica
ENSMFAG00000003394	SMG6	100	98.027	ENSPTRG00000008544	SMG6	100	99.217	Pan_troglodytes
ENSMFAG00000003394	SMG6	100	99.436	ENSPANG00000024588	SMG6	100	99.436	Papio_anubis
ENSMFAG00000003394	SMG6	89	71.071	ENSPSIG00000006660	SMG6	96	71.149	Pelodiscus_sinensis
ENSMFAG00000003394	SMG6	98	60.279	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSMFAG00000003394	SMG6	100	92.459	ENSPEMG00000020707	Smg6	100	92.459	Peromyscus_maniculatus_bairdii
ENSMFAG00000003394	SMG6	100	51.805	ENSPFOG00000012035	smg6	100	51.775	Poecilia_formosa
ENSMFAG00000003394	SMG6	77	57.033	ENSPLAG00000017660	smg6	74	54.481	Poecilia_latipinna
ENSMFAG00000003394	SMG6	77	56.752	ENSPMEG00000000258	smg6	74	54.796	Poecilia_mexicana
ENSMFAG00000003394	SMG6	83	54.788	ENSPREG00000010066	smg6	74	54.710	Poecilia_reticulata
ENSMFAG00000003394	SMG6	100	92.405	ENSPPYG00000007790	SMG6	100	92.405	Pongo_abelii
ENSMFAG00000003394	SMG6	100	88.724	ENSPCAG00000000552	SMG6	100	88.724	Procavia_capensis
ENSMFAG00000003394	SMG6	100	94.996	ENSPCOG00000020925	SMG6	100	94.996	Propithecus_coquereli
ENSMFAG00000003394	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSMFAG00000003394	SMG6	88	53.917	ENSPNYG00000024151	smg6	86	55.198	Pundamilia_nyererei
ENSMFAG00000003394	SMG6	85	53.307	ENSPNAG00000015480	smg6	90	48.070	Pygocentrus_nattereri
ENSMFAG00000003394	SMG6	100	91.825	ENSRNOG00000003041	Smg6	100	91.825	Rattus_norvegicus
ENSMFAG00000003394	SMG6	100	98.732	ENSRBIG00000024746	SMG6	100	98.732	Rhinopithecus_bieti
ENSMFAG00000003394	SMG6	100	98.802	ENSRROG00000030423	SMG6	100	99.609	Rhinopithecus_roxellana
ENSMFAG00000003394	SMG6	100	95.913	ENSSBOG00000022518	SMG6	100	94.292	Saimiri_boliviensis_boliviensis
ENSMFAG00000003394	SMG6	98	85.438	ENSSHAG00000010045	SMG6	98	85.438	Sarcophilus_harrisii
ENSMFAG00000003394	SMG6	72	62.326	ENSSFOG00015005436	smg6	73	55.120	Scleropages_formosus
ENSMFAG00000003394	SMG6	83	55.478	ENSSMAG00000019777	smg6	73	55.105	Scophthalmus_maximus
ENSMFAG00000003394	SMG6	83	55.191	ENSSDUG00000016412	smg6	74	55.148	Seriola_dumerili
ENSMFAG00000003394	SMG6	80	54.332	ENSSLDG00000020747	smg6	77	54.207	Seriola_lalandi_dorsalis
ENSMFAG00000003394	SMG6	99	70.404	ENSSPUG00000007152	SMG6	99	70.404	Sphenodon_punctatus
ENSMFAG00000003394	SMG6	71	59.450	ENSSPAG00000015633	smg6	74	55.024	Stegastes_partitus
ENSMFAG00000003394	SMG6	100	92.817	ENSSSCG00000017826	SMG6	100	92.817	Sus_scrofa
ENSMFAG00000003394	SMG6	100	72.160	ENSTGUG00000005836	SMG6	100	72.300	Taeniopygia_guttata
ENSMFAG00000003394	SMG6	100	47.586	ENSTRUG00000000358	smg6	100	47.982	Takifugu_rubripes
ENSMFAG00000003394	SMG6	100	49.967	ENSTNIG00000016164	smg6	100	50.397	Tetraodon_nigroviridis
ENSMFAG00000003394	SMG6	100	89.288	ENSTBEG00000011424	SMG6	100	89.288	Tupaia_belangeri
ENSMFAG00000003394	SMG6	91	91.818	ENSTTRG00000001175	SMG6	91	91.818	Tursiops_truncatus
ENSMFAG00000003394	SMG6	100	93.812	ENSUAMG00000025152	SMG6	100	93.804	Ursus_americanus
ENSMFAG00000003394	SMG6	98	94.152	ENSUMAG00000009306	SMG6	100	94.152	Ursus_maritimus
ENSMFAG00000003394	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSMFAG00000003394	SMG6	100	93.376	ENSVVUG00000021727	SMG6	100	93.376	Vulpes_vulpes
ENSMFAG00000003394	SMG6	98	59.168	ENSXETG00000023799	SMG6	100	58.956	Xenopus_tropicalis
ENSMFAG00000003394	SMG6	72	59.889	ENSXCOG00000009867	smg6	74	55.104	Xiphophorus_couchianus
ENSMFAG00000003394	SMG6	83	54.538	ENSXMAG00000010321	smg6	74	54.183	Xiphophorus_maculatus