EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMFAG00000003926 (Gene tree)
Gene ID: 102142203
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Plus strand
Length: 24230 bases
Position: chr20:46039185-46063414
Accession: 102142203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000034949	HVSL	PF09749.9	6.3e-63	1	1
ENSMFAP00000034965	HVSL	PF09749.9	3.6e-51	1	2
ENSMFAP00000034965	HVSL	PF09749.9	3.6e-51	2	2
ENSMFAP00000034970	HVSL	PF09749.9	6.4e-29	1	1
ENSMFAP00000034974	HVSL	PF09749.9	1.1e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000009181	USB1-201	2049	XM_005592087	ENSMFAP00000034949	265 (aa)	XP_005592144	A0A2K5WCV2
ENSMFAT00000009202	USB1-203	477	-	ENSMFAP00000034970	158 (aa)	-	A0A2K5WD11
ENSMFAT00000009197	USB1-202	744	-	ENSMFAP00000034965	247 (aa)	-	A0A2K5WD04
ENSMFAT00000009206	USB1-204	543	-	ENSMFAP00000034974	180 (aa)	-	A0A2K5WCY2

Gene Model

Click here to download ENSMFAG00000003926's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000003926's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000003926	USB1	100	96.226	ENSG00000103005	USB1	100	96.729	Homo_sapiens
ENSMFAG00000003926	USB1	98	46.360	ENSAPOG00000011942	usb1	82	51.628	Acanthochromis_polyacanthus
ENSMFAG00000003926	USB1	100	84.387	ENSAMEG00000017205	USB1	100	84.387	Ailuropoda_melanoleuca
ENSMFAG00000003926	USB1	85	54.018	ENSACIG00000012234	usb1	82	54.018	Amphilophus_citrinellus
ENSMFAG00000003926	USB1	95	50.598	ENSAOCG00000014831	usb1	80	54.185	Amphiprion_ocellaris
ENSMFAG00000003926	USB1	95	50.996	ENSAPEG00000000296	usb1	80	54.626	Amphiprion_percula
ENSMFAG00000003926	USB1	99	46.008	ENSATEG00000009348	usb1	82	52.814	Anabas_testudineus
ENSMFAG00000003926	USB1	85	70.925	ENSAPLG00000002756	USB1	100	70.796	Anas_platyrhynchos
ENSMFAG00000003926	USB1	86	64.192	ENSACAG00000015481	USB1	100	64.192	Anolis_carolinensis
ENSMFAG00000003926	USB1	100	95.094	ENSANAG00000035640	USB1	100	95.094	Aotus_nancymaae
ENSMFAG00000003926	USB1	94	50.201	ENSACLG00000020586	usb1	80	53.097	Astatotilapia_calliptera
ENSMFAG00000003926	USB1	84	51.570	ENSAMXG00000040146	usb1	74	51.570	Astyanax_mexicanus
ENSMFAG00000003926	USB1	100	84.906	ENSBTAG00000015758	USB1	100	84.906	Bos_taurus
ENSMFAG00000003926	USB1	100	95.849	ENSCJAG00000011733	USB1	100	95.849	Callithrix_jacchus
ENSMFAG00000003926	USB1	99	82.353	ENSCAFG00000008556	USB1	73	81.250	Canis_familiaris
ENSMFAG00000003926	USB1	99	83.396	ENSCAFG00020009263	USB1	99	80.220	Canis_lupus_dingo
ENSMFAG00000003926	USB1	100	84.528	ENSCHIG00000024290	USB1	100	84.528	Capra_hircus
ENSMFAG00000003926	USB1	100	90.189	ENSTSYG00000006997	USB1	100	90.189	Carlito_syrichta
ENSMFAG00000003926	USB1	75	86.441	ENSCAPG00000009057	USB1	100	73.364	Cavia_aperea
ENSMFAG00000003926	USB1	100	83.209	ENSCPOG00000014325	USB1	100	82.090	Cavia_porcellus
ENSMFAG00000003926	USB1	100	95.472	ENSCCAG00000022132	USB1	100	95.472	Cebus_capucinus
ENSMFAG00000003926	USB1	100	99.623	ENSCATG00000032174	USB1	100	99.623	Cercocebus_atys
ENSMFAG00000003926	USB1	66	88.068	ENSCLAG00000007363	USB1	100	88.068	Chinchilla_lanigera
ENSMFAG00000003926	USB1	100	98.491	ENSCSAG00000004783	USB1	100	98.491	Chlorocebus_sabaeus
ENSMFAG00000003926	USB1	92	66.531	ENSCPBG00000026943	USB1	100	62.230	Chrysemys_picta_bellii
ENSMFAG00000003926	USB1	83	30.131	ENSCSAVG00000000894	-	82	30.263	Ciona_savignyi
ENSMFAG00000003926	USB1	100	97.358	ENSCANG00000037135	USB1	100	97.358	Colobus_angolensis_palliatus
ENSMFAG00000003926	USB1	100	85.075	ENSCGRG00001011243	USB1	100	84.701	Cricetulus_griseus_chok1gshd
ENSMFAG00000003926	USB1	100	85.075	ENSCGRG00000013252	USB1	100	84.701	Cricetulus_griseus_crigri
ENSMFAG00000003926	USB1	98	47.445	ENSCSEG00000013881	usb1	84	50.215	Cynoglossus_semilaevis
ENSMFAG00000003926	USB1	85	50.000	ENSCVAG00000009252	usb1	97	50.439	Cyprinodon_variegatus
ENSMFAG00000003926	USB1	94	46.586	ENSDARG00000003841	usb1	87	48.117	Danio_rerio
ENSMFAG00000003926	USB1	100	83.774	ENSDORG00000001888	Usb1	100	83.774	Dipodomys_ordii
ENSMFAG00000003926	USB1	77	40.000	FBgn0037713	CG16790	78	40.000	Drosophila_melanogaster
ENSMFAG00000003926	USB1	96	75.817	ENSETEG00000019682	USB1	100	70.037	Echinops_telfairi
ENSMFAG00000003926	USB1	84	50.901	ENSEBUG00000005889	usb1	78	50.901	Eptatretus_burgeri
ENSMFAG00000003926	USB1	100	87.170	ENSEASG00005005484	USB1	100	87.170	Equus_asinus_asinus
ENSMFAG00000003926	USB1	100	87.925	ENSECAG00000019493	USB1	91	87.925	Equus_caballus
ENSMFAG00000003926	USB1	66	79.545	ENSEEUG00000000154	USB1	66	79.545	Erinaceus_europaeus
ENSMFAG00000003926	USB1	86	50.000	ENSELUG00000010974	usb1	84	50.000	Esox_lucius
ENSMFAG00000003926	USB1	100	86.517	ENSFCAG00000002693	USB1	100	86.517	Felis_catus
ENSMFAG00000003926	USB1	85	66.814	ENSFALG00000006876	USB1	99	62.172	Ficedula_albicollis
ENSMFAG00000003926	USB1	100	86.142	ENSFDAG00000010052	USB1	100	85.393	Fukomys_damarensis
ENSMFAG00000003926	USB1	92	45.732	ENSFHEG00000012334	usb1	78	53.061	Fundulus_heteroclitus
ENSMFAG00000003926	USB1	84	51.121	ENSGMOG00000004228	usb1	99	51.121	Gadus_morhua
ENSMFAG00000003926	USB1	84	67.857	ENSGALG00000035604	USB1	100	63.534	Gallus_gallus
ENSMFAG00000003926	USB1	98	48.014	ENSGAFG00000021890	usb1	87	50.617	Gambusia_affinis
ENSMFAG00000003926	USB1	85	52.212	ENSGACG00000003257	usb1	81	52.212	Gasterosteus_aculeatus
ENSMFAG00000003926	USB1	100	63.504	ENSGAGG00000022572	USB1	100	62.637	Gopherus_agassizii
ENSMFAG00000003926	USB1	100	96.981	ENSGGOG00000017147	USB1	100	96.981	Gorilla_gorilla
ENSMFAG00000003926	USB1	94	51.004	ENSHBUG00000009823	usb1	81	53.744	Haplochromis_burtoni
ENSMFAG00000003926	USB1	100	86.891	ENSHGLG00000016078	USB1	98	86.142	Heterocephalus_glaber_female
ENSMFAG00000003926	USB1	100	86.891	ENSHGLG00100005562	USB1	98	86.142	Heterocephalus_glaber_male
ENSMFAG00000003926	USB1	82	54.839	ENSHCOG00000015633	usb1	86	54.709	Hippocampus_comes
ENSMFAG00000003926	USB1	85	54.018	ENSIPUG00000008601	usb1	78	54.018	Ictalurus_punctatus
ENSMFAG00000003926	USB1	100	85.036	ENSSTOG00000007548	USB1	100	84.615	Ictidomys_tridecemlineatus
ENSMFAG00000003926	USB1	100	86.194	ENSJJAG00000021859	Usb1	100	85.393	Jaculus_jaculus
ENSMFAG00000003926	USB1	96	49.027	ENSKMAG00000007200	usb1	80	53.304	Kryptolebias_marmoratus
ENSMFAG00000003926	USB1	75	52.261	ENSLBEG00000008452	usb1	64	53.158	Labrus_bergylta
ENSMFAG00000003926	USB1	83	56.637	ENSLACG00000000105	USB1	73	60.000	Latimeria_chalumnae
ENSMFAG00000003926	USB1	95	53.360	ENSLOCG00000000465	usb1	88	53.815	Lepisosteus_oculatus
ENSMFAG00000003926	USB1	100	65.683	ENSLAFG00000002267	USB1	100	65.556	Loxodonta_africana
ENSMFAG00000003926	USB1	100	100.000	ENSMMUG00000022669	USB1	100	100.000	Macaca_mulatta
ENSMFAG00000003926	USB1	100	100.000	ENSMNEG00000042487	USB1	100	100.000	Macaca_nemestrina
ENSMFAG00000003926	USB1	100	100.000	ENSMLEG00000028756	USB1	100	100.000	Mandrillus_leucophaeus
ENSMFAG00000003926	USB1	98	48.375	ENSMAMG00000015092	usb1	83	52.361	Mastacembelus_armatus
ENSMFAG00000003926	USB1	94	50.201	ENSMZEG00005010008	usb1	80	53.097	Maylandia_zebra
ENSMFAG00000003926	USB1	100	85.019	ENSMAUG00000007832	Usb1	100	84.270	Mesocricetus_auratus
ENSMFAG00000003926	USB1	100	91.772	ENSMICG00000004900	USB1	100	91.772	Microcebus_murinus
ENSMFAG00000003926	USB1	100	84.701	ENSMOCG00000022647	Usb1	100	84.270	Microtus_ochrogaster
ENSMFAG00000003926	USB1	86	52.632	ENSMMOG00000000490	usb1	88	52.632	Mola_mola
ENSMFAG00000003926	USB1	100	69.030	ENSMODG00000014067	USB1	100	67.537	Monodelphis_domestica
ENSMFAG00000003926	USB1	94	50.201	ENSMALG00000005930	usb1	80	53.304	Monopterus_albus
ENSMFAG00000003926	USB1	100	81.273	MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	Mus_caroli
ENSMFAG00000003926	USB1	100	81.648	ENSMUSG00000031792	Usb1	100	84.956	Mus_musculus
ENSMFAG00000003926	USB1	100	82.022	MGP_PahariEiJ_G0023019	Usb1	100	85.470	Mus_pahari
ENSMFAG00000003926	USB1	100	80.899	MGP_SPRETEiJ_G0032540	Usb1	100	80.150	Mus_spretus
ENSMFAG00000003926	USB1	100	82.528	ENSMPUG00000004684	USB1	96	82.156	Mustela_putorius_furo
ENSMFAG00000003926	USB1	87	88.745	ENSMLUG00000007400	USB1	100	88.745	Myotis_lucifugus
ENSMFAG00000003926	USB1	100	83.704	ENSNGAG00000009703	Usb1	100	83.271	Nannospalax_galili
ENSMFAG00000003926	USB1	87	52.093	ENSNBRG00000008747	usb1	99	53.960	Neolamprologus_brichardi
ENSMFAG00000003926	USB1	100	94.304	ENSNLEG00000003340	USB1	100	97.200	Nomascus_leucogenys
ENSMFAG00000003926	USB1	94	59.615	ENSMEUG00000003328	-	100	60.645	Notamacropus_eugenii
ENSMFAG00000003926	USB1	75	78.814	ENSOPRG00000011803	USB1	72	87.879	Ochotona_princeps
ENSMFAG00000003926	USB1	100	82.397	ENSODEG00000016214	USB1	100	81.648	Octodon_degus
ENSMFAG00000003926	USB1	98	47.872	ENSONIG00000011063	usb1	81	53.304	Oreochromis_niloticus
ENSMFAG00000003926	USB1	85	74.667	ENSOANG00000012118	USB1	94	74.667	Ornithorhynchus_anatinus
ENSMFAG00000003926	USB1	94	47.791	ENSORLG00000012479	usb1	83	50.439	Oryzias_latipes
ENSMFAG00000003926	USB1	94	48.193	ENSORLG00020018671	usb1	99	47.778	Oryzias_latipes_hni
ENSMFAG00000003926	USB1	86	50.877	ENSORLG00015009679	usb1	84	50.877	Oryzias_latipes_hsok
ENSMFAG00000003926	USB1	85	50.442	ENSOMEG00000012930	usb1	82	50.000	Oryzias_melastigma
ENSMFAG00000003926	USB1	100	87.854	ENSOGAG00000003273	USB1	100	87.854	Otolemur_garnettii
ENSMFAG00000003926	USB1	95	83.004	ENSOARG00000001107	USB1	93	85.185	Ovis_aries
ENSMFAG00000003926	USB1	100	96.604	ENSPPAG00000042137	USB1	100	96.604	Pan_paniscus
ENSMFAG00000003926	USB1	100	86.517	ENSPPRG00000024797	USB1	100	86.517	Panthera_pardus
ENSMFAG00000003926	USB1	100	86.517	ENSPTIG00000007506	USB1	100	86.517	Panthera_tigris_altaica
ENSMFAG00000003926	USB1	100	95.951	ENSPTRG00000008172	USB1	100	97.664	Pan_troglodytes
ENSMFAG00000003926	USB1	100	100.000	ENSPANG00000025138	USB1	100	100.000	Papio_anubis
ENSMFAG00000003926	USB1	93	52.823	ENSPKIG00000015109	usb1	86	51.562	Paramormyrops_kingsleyae
ENSMFAG00000003926	USB1	85	54.425	ENSPSIG00000004305	USB1	100	54.425	Pelodiscus_sinensis
ENSMFAG00000003926	USB1	84	52.466	ENSPMGG00000017725	usb1	85	52.466	Periophthalmus_magnuspinnatus
ENSMFAG00000003926	USB1	100	83.150	ENSPEMG00000016183	Usb1	100	80.515	Peromyscus_maniculatus_bairdii
ENSMFAG00000003926	USB1	89	48.945	ENSPMAG00000000462	usb1	100	48.945	Petromyzon_marinus
ENSMFAG00000003926	USB1	98	48.014	ENSPFOG00000011130	usb1	82	52.193	Poecilia_formosa
ENSMFAG00000003926	USB1	98	48.014	ENSPLAG00000009820	usb1	82	52.193	Poecilia_latipinna
ENSMFAG00000003926	USB1	98	48.014	ENSPMEG00000006402	usb1	82	52.193	Poecilia_mexicana
ENSMFAG00000003926	USB1	92	43.558	ENSPREG00000001047	usb1	79	53.571	Poecilia_reticulata
ENSMFAG00000003926	USB1	95	93.254	ENSPPYG00000007401	USB1	100	93.254	Pongo_abelii
ENSMFAG00000003926	USB1	100	94.304	ENSPCOG00000022612	USB1	100	94.304	Propithecus_coquereli
ENSMFAG00000003926	USB1	100	81.509	ENSPVAG00000004613	USB1	100	81.509	Pteropus_vampyrus
ENSMFAG00000003926	USB1	94	51.515	ENSPNYG00000022262	usb1	81	53.744	Pundamilia_nyererei
ENSMFAG00000003926	USB1	98	47.510	ENSPNAG00000011736	usb1	76	52.232	Pygocentrus_nattereri
ENSMFAG00000003926	USB1	100	83.895	ENSRNOG00000013216	Usb1	100	83.146	Rattus_norvegicus
ENSMFAG00000003926	USB1	100	98.785	ENSRBIG00000044466	USB1	100	99.533	Rhinopithecus_bieti
ENSMFAG00000003926	USB1	100	98.868	ENSRROG00000029211	USB1	100	98.868	Rhinopithecus_roxellana
ENSMFAG00000003926	USB1	100	94.717	ENSSBOG00000029362	USB1	100	94.717	Saimiri_boliviensis_boliviensis
ENSMFAG00000003926	USB1	83	73.973	ENSSHAG00000006993	USB1	96	70.492	Sarcophilus_harrisii
ENSMFAG00000003926	USB1	87	56.277	ENSSFOG00015023663	usb1	73	56.277	Scleropages_formosus
ENSMFAG00000003926	USB1	98	49.275	ENSSMAG00000015834	usb1	99	48.299	Scophthalmus_maximus
ENSMFAG00000003926	USB1	85	55.357	ENSSDUG00000002949	usb1	83	55.357	Seriola_dumerili
ENSMFAG00000003926	USB1	98	49.807	ENSSLDG00000014174	usb1	80	54.867	Seriola_lalandi_dorsalis
ENSMFAG00000003926	USB1	81	69.159	ENSSPUG00000006741	USB1	100	69.159	Sphenodon_punctatus
ENSMFAG00000003926	USB1	98	46.528	ENSSPAG00000007484	usb1	80	52.423	Stegastes_partitus
ENSMFAG00000003926	USB1	100	84.015	ENSSSCG00000002807	USB1	100	82.528	Sus_scrofa
ENSMFAG00000003926	USB1	80	70.283	ENSTGUG00000004792	USB1	99	63.774	Taeniopygia_guttata
ENSMFAG00000003926	USB1	98	48.507	ENSTRUG00000021069	usb1	86	50.215	Takifugu_rubripes
ENSMFAG00000003926	USB1	98	46.154	ENSTNIG00000000626	usb1	83	48.661	Tetraodon_nigroviridis
ENSMFAG00000003926	USB1	88	61.638	ENSTBEG00000001507	USB1	100	61.638	Tupaia_belangeri
ENSMFAG00000003926	USB1	100	84.387	ENSUAMG00000016823	USB1	100	84.758	Ursus_americanus
ENSMFAG00000003926	USB1	81	88.318	ENSUMAG00000021369	USB1	100	88.318	Ursus_maritimus
ENSMFAG00000003926	USB1	96	51.656	ENSVPAG00000009834	-	59	88.333	Vicugna_pacos
ENSMFAG00000003926	USB1	99	83.209	ENSVVUG00000023700	USB1	93	85.892	Vulpes_vulpes
ENSMFAG00000003926	USB1	82	55.505	ENSXETG00000013795	usb1	94	53.814	Xenopus_tropicalis
ENSMFAG00000003926	USB1	86	52.632	ENSXMAG00000024687	usb1	67	52.632	Xiphophorus_maculatus