EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMFAG00000004037 (Gene tree)
Gene ID: 107126386
Gene Symbol: APOBEC3F
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3F
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Minus strand
Length: 13546 bases
Position: chr10:12164782-12178327
Accession: 107126386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000035146	APOBEC_N	PF08210.11	1e-106	1	2
ENSMFAP00000035146	APOBEC_N	PF08210.11	1e-106	2	2
ENSMFAP00000035146	APOBEC_C	PF05240.14	1.9e-66	1	2
ENSMFAP00000035146	APOBEC_C	PF05240.14	1.9e-66	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000009381	APOBEC3F-201	2689	XM_005567253	ENSMFAP00000035146	373 (aa)	XP_005567310	A0A2K5WDM1
ENSMFAT00000009385	APOBEC3F-202	1401	XM_005567254	ENSMFAP00000035150	102 (aa)	XP_005567311	A0A2K5WDG8

Gene Model

Click here to download ENSMFAG00000004037's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000004037's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMFAG00000004037	APOBEC3F	98	33.166	ENSMFAG00000044645	APOBEC2	87	33.333
ENSMFAG00000004037	APOBEC3F	100	77.419	ENSMFAG00000016792	APOBEC3C	100	77.419
ENSMFAG00000004037	APOBEC3F	92	35.227	ENSMFAG00000031827	APOBEC3H	87	35.227
ENSMFAG00000004037	APOBEC3F	61	43.243	ENSMFAG00000000277	APOBEC1	63	43.243
ENSMFAG00000004037	APOBEC3F	100	60.904	ENSMFAG00000008980	APOBEC3A	98	60.904
ENSMFAG00000004037	APOBEC3F	94	44.253	ENSMFAG00000037834	AICDA	94	44.118
ENSMFAG00000004037	APOBEC3F	100	76.471	ENSMFAG00000002331	-	100	76.471
ENSMFAG00000004037	APOBEC3F	99	44.186	ENSMFAG00000044711	APOBEC3G	87	44.156

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000004037	APOBEC3F	100	75.806	ENSG00000243811	APOBEC3D	100	75.806	Homo_sapiens
ENSMFAG00000004037	APOBEC3F	100	87.936	ENSG00000128394	APOBEC3F	100	87.936	Homo_sapiens
ENSMFAG00000004037	APOBEC3F	100	74.731	ENSG00000244509	APOBEC3C	100	74.731	Homo_sapiens
ENSMFAG00000004037	APOBEC3F	99	69.730	ENSANAG00000030088	-	98	69.730	Aotus_nancymaae
ENSMFAG00000004037	APOBEC3F	71	68.182	ENSCJAG00000015317	-	100	68.182	Callithrix_jacchus
ENSMFAG00000004037	APOBEC3F	99	46.524	ENSCAFG00020002615	-	99	46.524	Canis_lupus_dingo
ENSMFAG00000004037	APOBEC3F	97	56.284	ENSTSYG00000028254	-	99	56.284	Carlito_syrichta
ENSMFAG00000004037	APOBEC3F	99	52.459	ENSTSYG00000034260	-	98	52.459	Carlito_syrichta
ENSMFAG00000004037	APOBEC3F	97	50.000	ENSTSYG00000030036	-	99	50.000	Carlito_syrichta
ENSMFAG00000004037	APOBEC3F	99	65.000	ENSCCAG00000030932	-	90	65.000	Cebus_capucinus
ENSMFAG00000004037	APOBEC3F	98	95.652	ENSCATG00000033502	-	95	95.652	Cercocebus_atys
ENSMFAG00000004037	APOBEC3F	100	73.656	ENSCATG00000043226	APOBEC3C	100	73.656	Cercocebus_atys
ENSMFAG00000004037	APOBEC3F	100	83.155	ENSCSAG00000006382	APOBEC3F	100	83.155	Chlorocebus_sabaeus
ENSMFAG00000004037	APOBEC3F	100	73.118	ENSCSAG00000006402	APOBEC3C	100	73.118	Chlorocebus_sabaeus
ENSMFAG00000004037	APOBEC3F	100	81.572	ENSCANG00000031957	-	100	81.283	Colobus_angolensis_palliatus
ENSMFAG00000004037	APOBEC3F	100	91.153	ENSCANG00000032904	-	100	91.153	Colobus_angolensis_palliatus
ENSMFAG00000004037	APOBEC3F	100	87.399	ENSCANG00000033269	-	99	88.587	Colobus_angolensis_palliatus
ENSMFAG00000004037	APOBEC3F	100	74.194	ENSCANG00000039177	APOBEC3C	100	74.194	Colobus_angolensis_palliatus
ENSMFAG00000004037	APOBEC3F	95	34.890	ENSDNOG00000044642	-	99	34.890	Dasypus_novemcinctus
ENSMFAG00000004037	APOBEC3F	99	48.469	ENSEASG00005018641	-	96	48.469	Equus_asinus_asinus
ENSMFAG00000004037	APOBEC3F	99	50.270	ENSECAG00000006071	-	100	44.262	Equus_caballus
ENSMFAG00000004037	APOBEC3F	100	86.863	ENSGGOG00000038678	APOBEC3F	100	86.863	Gorilla_gorilla
ENSMFAG00000004037	APOBEC3F	100	73.656	ENSGGOG00000036587	-	100	73.656	Gorilla_gorilla
ENSMFAG00000004037	APOBEC3F	99	43.011	ENSHGLG00000017315	-	91	43.011	Heterocephalus_glaber_female
ENSMFAG00000004037	APOBEC3F	99	43.011	ENSHGLG00100003105	-	94	43.011	Heterocephalus_glaber_male
ENSMFAG00000004037	APOBEC3F	98	77.174	ENSMMUG00000004018	APOBEC3C	95	77.174	Macaca_mulatta
ENSMFAG00000004037	APOBEC3F	99	98.919	ENSMMUG00000004017	APOBEC3F	99	96.486	Macaca_mulatta
ENSMFAG00000004037	APOBEC3F	100	74.194	ENSMNEG00000045196	APOBEC3C	100	74.194	Macaca_nemestrina
ENSMFAG00000004037	APOBEC3F	100	83.110	ENSMNEG00000043316	APOBEC3D	100	83.110	Macaca_nemestrina
ENSMFAG00000004037	APOBEC3F	100	74.731	ENSMLEG00000036992	APOBEC3C	100	74.731	Mandrillus_leucophaeus
ENSMFAG00000004037	APOBEC3F	100	94.370	ENSMLEG00000029642	APOBEC3F	100	94.370	Mandrillus_leucophaeus
ENSMFAG00000004037	APOBEC3F	99	53.514	ENSMICG00000042615	-	89	53.514	Microcebus_murinus
ENSMFAG00000004037	APOBEC3F	99	44.904	ENSMLUG00000023676	-	99	44.904	Myotis_lucifugus
ENSMFAG00000004037	APOBEC3F	100	69.430	ENSNLEG00000035811	-	100	69.430	Nomascus_leucogenys
ENSMFAG00000004037	APOBEC3F	100	70.968	ENSNLEG00000028392	APOBEC3C	100	70.968	Nomascus_leucogenys
ENSMFAG00000004037	APOBEC3F	99	44.648	ENSOGAG00000032498	-	99	44.648	Otolemur_garnettii
ENSMFAG00000004037	APOBEC3F	98	44.780	ENSOGAG00000033404	-	100	44.780	Otolemur_garnettii
ENSMFAG00000004037	APOBEC3F	99	42.781	ENSOGAG00000030300	-	99	42.781	Otolemur_garnettii
ENSMFAG00000004037	APOBEC3F	100	74.194	ENSPPAG00000014118	APOBEC3C	100	74.194	Pan_paniscus
ENSMFAG00000004037	APOBEC3F	100	75.000	ENSPPAG00000028218	-	100	73.656	Pan_paniscus
ENSMFAG00000004037	APOBEC3F	98	50.000	ENSPPRG00000003726	-	98	50.000	Panthera_pardus
ENSMFAG00000004037	APOBEC3F	100	73.118	ENSPTRG00000041588	APOBEC3D	100	73.118	Pan_troglodytes
ENSMFAG00000004037	APOBEC3F	100	87.936	ENSPTRG00000014385	APOBEC3C	100	87.936	Pan_troglodytes
ENSMFAG00000004037	APOBEC3F	100	90.617	ENSPANG00000010775	APOBEC3F	100	90.617	Papio_anubis
ENSMFAG00000004037	APOBEC3F	100	70.430	ENSPPYG00000011832	APOBEC3C	100	70.430	Pongo_abelii
ENSMFAG00000004037	APOBEC3F	68	58.140	ENSPCOG00000022067	-	98	58.140	Propithecus_coquereli
ENSMFAG00000004037	APOBEC3F	67	59.200	ENSPCOG00000018072	-	95	59.200	Propithecus_coquereli
ENSMFAG00000004037	APOBEC3F	81	51.220	ENSPVAG00000009461	-	71	51.220	Pteropus_vampyrus
ENSMFAG00000004037	APOBEC3F	100	75.543	ENSRBIG00000030834	-	100	75.543	Rhinopithecus_bieti
ENSMFAG00000004037	APOBEC3F	100	85.523	ENSRBIG00000042297	-	100	91.083	Rhinopithecus_bieti
ENSMFAG00000004037	APOBEC3F	100	91.160	ENSRBIG00000030323	-	100	91.160	Rhinopithecus_bieti
ENSMFAG00000004037	APOBEC3F	100	91.421	ENSRROG00000029045	APOBEC3C	100	91.421	Rhinopithecus_roxellana
ENSMFAG00000004037	APOBEC3F	100	85.255	ENSRROG00000029996	-	100	85.255	Rhinopithecus_roxellana
ENSMFAG00000004037	APOBEC3F	100	76.087	ENSRROG00000028557	-	100	76.087	Rhinopithecus_roxellana
ENSMFAG00000004037	APOBEC3F	100	70.261	ENSSBOG00000032780	-	100	70.261	Saimiri_boliviensis_boliviensis
ENSMFAG00000004037	APOBEC3F	89	46.961	ENSUAMG00000004433	-	99	46.961	Ursus_americanus
ENSMFAG00000004037	APOBEC3F	93	47.826	ENSUMAG00000014441	-	85	47.826	Ursus_maritimus
ENSMFAG00000004037	APOBEC3F	78	49.664	ENSVVUG00000014628	-	91	49.315	Vulpes_vulpes