EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMFAG00000008980 (Gene tree)
Gene ID: 102131077
Gene Symbol: APOBEC3A
Alias: A3A
Full Name: Macaca fascicularis apolipoprotein B mRNA editing enzyme catalytic subunit 3A (APOBEC3A)%2C mRNA.
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Minus strand
Length: 41607 bases
Position: chr10:12227423-12269029
Accession: NM_001319359
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000010710	APOBEC_N	PF08210.11	2.6e-99	1	2
ENSMFAP00000010710	APOBEC_N	PF08210.11	2.6e-99	2	2
ENSMFAP00000010737	APOBEC_N	PF08210.11	9.1e-91	1	2
ENSMFAP00000010737	APOBEC_N	PF08210.11	9.1e-91	2	2
ENSMFAP00000010793	APOBEC_N	PF08210.11	1.6e-48	1	1
ENSMFAP00000010803	APOBEC_N	PF08210.11	1.6e-48	1	1
ENSMFAP00000010810	APOBEC_N	PF08210.11	5.8e-48	1	1
ENSMFAP00000010710	APOBEC_C	PF05240.14	1.5e-62	1	2
ENSMFAP00000010710	APOBEC_C	PF05240.14	1.5e-62	2	2
ENSMFAP00000010737	APOBEC_C	PF05240.14	7.9e-48	1	2
ENSMFAP00000010737	APOBEC_C	PF05240.14	7.9e-48	2	2
ENSMFAP00000010793	APOBEC_C	PF05240.14	2.1e-32	1	1
ENSMFAP00000010803	APOBEC_C	PF05240.14	2.1e-32	1	1
ENSMFAP00000010810	APOBEC_C	PF05240.14	5e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000043524	-	609	-	ENSMFAP00000010793	202 (aa)	-	A0A2K5UEK9
ENSMFAT00000043663	-	1096	XM_005567261	ENSMFAP00000010803	202 (aa)	XP_005567318	A0A2K5UEK9
ENSMFAT00000042737	-	1143	XM_005567246	ENSMFAP00000010710	380 (aa)	XP_005567303	A0A2K5UEB6
ENSMFAT00000043850	-	216	-	ENSMFAP00000010813	71 (aa)	-	A0A2K5UEM6
ENSMFAT00000042870	-	1416	-	ENSMFAP00000010737	471 (aa)	-	A0A2K5UED1
ENSMFAT00000043720	-	930	-	ENSMFAP00000010810	309 (aa)	-	A0A2K5UEL0

Gene Model

Click here to download ENSMFAG00000008980's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf05170	Human immunodeficiency virus 1 infection	KEGG
mcf05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000008980's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMFAG00000008980	APOBEC3A	98	63.830	ENSMFAG00000002331	-	100	63.830
ENSMFAG00000008980	APOBEC3A	97	50.526	ENSMFAG00000016792	APOBEC3C	100	50.526
ENSMFAG00000008980	APOBEC3A	95	45.055	ENSMFAG00000037834	AICDA	95	46.000
ENSMFAG00000008980	APOBEC3A	96	64.767	ENSMFAG00000044711	APOBEC3G	86	64.767
ENSMFAG00000008980	APOBEC3A	98	34.010	ENSMFAG00000031827	APOBEC3H	90	34.759
ENSMFAG00000008980	APOBEC3A	94	33.333	ENSMFAG00000044645	APOBEC2	80	33.333
ENSMFAG00000008980	APOBEC3A	98	60.904	ENSMFAG00000004037	APOBEC3F	100	60.904

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000008980	APOBEC3A	99	81.443	ENSG00000179750	APOBEC3B	99	81.414	Homo_sapiens
ENSMFAG00000008980	APOBEC3A	100	80.693	ENSG00000128383	APOBEC3A	100	80.693	Homo_sapiens
ENSMFAG00000008980	APOBEC3A	97	54.348	ENSCJAG00000012500	-	98	54.348	Callithrix_jacchus
ENSMFAG00000008980	APOBEC3A	100	59.406	ENSTSYG00000035593	-	100	59.406	Carlito_syrichta
ENSMFAG00000008980	APOBEC3A	96	65.803	ENSCCAG00000027450	-	96	65.803	Cebus_capucinus
ENSMFAG00000008980	APOBEC3A	100	91.584	ENSCATG00000013527	-	100	91.584	Cercocebus_atys
ENSMFAG00000008980	APOBEC3A	99	86.082	ENSCSAG00000006445	-	99	84.718	Chlorocebus_sabaeus
ENSMFAG00000008980	APOBEC3A	73	89.116	ENSCSAG00000018401	-	70	89.116	Chlorocebus_sabaeus
ENSMFAG00000008980	APOBEC3A	100	84.653	ENSCANG00000030513	-	100	84.653	Colobus_angolensis_palliatus
ENSMFAG00000008980	APOBEC3A	98	79.581	ENSGGOG00000006721	APOBEC3B	98	81.347	Gorilla_gorilla
ENSMFAG00000008980	APOBEC3A	100	98.515	ENSMMUG00000042504	APOBEC3A	100	98.515	Macaca_mulatta
ENSMFAG00000008980	APOBEC3A	99	95.361	ENSMMUG00000004015	-	100	94.359	Macaca_mulatta
ENSMFAG00000008980	APOBEC3A	98	91.617	ENSMNEG00000043211	-	95	91.617	Macaca_nemestrina
ENSMFAG00000008980	APOBEC3A	98	90.838	ENSMLEG00000004809	-	99	90.838	Mandrillus_leucophaeus
ENSMFAG00000008980	APOBEC3A	99	80.402	ENSNLEG00000015215	-	100	78.713	Nomascus_leucogenys
ENSMFAG00000008980	APOBEC3A	99	82.990	ENSPPAG00000009288	APOBEC3B	99	82.984	Pan_paniscus
ENSMFAG00000008980	APOBEC3A	99	77.612	ENSPTRG00000014384	APOBEC3B	99	77.612	Pan_troglodytes
ENSMFAG00000008980	APOBEC3A	100	90.594	ENSPANG00000006941	APOBEC3B	100	90.594	Papio_anubis
ENSMFAG00000008980	APOBEC3A	98	81.432	ENSPPYG00000011831	-	99	81.432	Pongo_abelii
ENSMFAG00000008980	APOBEC3A	76	57.143	ENSPCOG00000017606	-	97	57.143	Propithecus_coquereli
ENSMFAG00000008980	APOBEC3A	98	86.911	ENSRBIG00000042829	-	99	86.911	Rhinopithecus_bieti
ENSMFAG00000008980	APOBEC3A	98	86.911	ENSRROG00000028773	APOBEC3G	99	86.911	Rhinopithecus_roxellana