EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMFAG00000016792 (Gene tree)
Gene ID: 101925624
Gene Symbol: APOBEC3C
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3C
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Minus strand
Length: 4362 bases
Position: chr10:12200377-12204738
Accession: 101925624
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000011567	APOBEC_N	PF08210.11	4.7e-57	1	1
ENSMFAP00000011567	APOBEC_C	PF05240.14	6e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000050443	-	1076	-	ENSMFAP00000011567	190 (aa)	-	A0A2K5UGR0

Gene Model

Click here to download ENSMFAG00000016792's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000016792's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMFAG00000016792	APOBEC3C	94	42.458	ENSMFAG00000037834	AICDA	94	41.844
ENSMFAG00000016792	APOBEC3C	100	77.419	ENSMFAG00000004037	APOBEC3F	100	77.419
ENSMFAG00000016792	APOBEC3C	100	50.526	ENSMFAG00000008980	APOBEC3A	97	50.526
ENSMFAG00000016792	APOBEC3C	99	42.473	ENSMFAG00000044711	APOBEC3G	86	42.473
ENSMFAG00000016792	APOBEC3C	100	74.731	ENSMFAG00000002331	-	100	74.731
ENSMFAG00000016792	APOBEC3C	93	34.807	ENSMFAG00000044645	APOBEC2	79	34.807
ENSMFAG00000016792	APOBEC3C	96	33.158	ENSMFAG00000031827	APOBEC3H	90	32.979

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000016792	APOBEC3C	100	83.684	ENSG00000244509	APOBEC3C	100	83.684	Homo_sapiens
ENSMFAG00000016792	APOBEC3C	100	72.581	ENSG00000128394	APOBEC3F	100	72.581	Homo_sapiens
ENSMFAG00000016792	APOBEC3C	100	73.158	ENSG00000243811	APOBEC3D	100	73.158	Homo_sapiens
ENSMFAG00000016792	APOBEC3C	100	65.789	ENSANAG00000030088	-	97	65.054	Aotus_nancymaae
ENSMFAG00000016792	APOBEC3C	69	65.909	ENSCJAG00000015317	-	100	65.909	Callithrix_jacchus
ENSMFAG00000016792	APOBEC3C	98	46.316	ENSCAFG00020002615	-	99	46.316	Canis_lupus_dingo
ENSMFAG00000016792	APOBEC3C	96	54.645	ENSTSYG00000028254	-	99	54.645	Carlito_syrichta
ENSMFAG00000016792	APOBEC3C	96	49.180	ENSTSYG00000030036	-	99	49.180	Carlito_syrichta
ENSMFAG00000016792	APOBEC3C	100	50.820	ENSTSYG00000034260	-	98	50.820	Carlito_syrichta
ENSMFAG00000016792	APOBEC3C	98	63.441	ENSCCAG00000030932	-	84	63.441	Cebus_capucinus
ENSMFAG00000016792	APOBEC3C	100	90.000	ENSCATG00000043226	APOBEC3C	100	90.000	Cercocebus_atys
ENSMFAG00000016792	APOBEC3C	99	76.882	ENSCATG00000033502	-	100	76.882	Cercocebus_atys
ENSMFAG00000016792	APOBEC3C	100	88.947	ENSCSAG00000006402	APOBEC3C	100	88.947	Chlorocebus_sabaeus
ENSMFAG00000016792	APOBEC3C	100	75.806	ENSCSAG00000006382	APOBEC3F	100	75.806	Chlorocebus_sabaeus
ENSMFAG00000016792	APOBEC3C	100	73.118	ENSCANG00000031957	-	100	73.118	Colobus_angolensis_palliatus
ENSMFAG00000016792	APOBEC3C	100	85.789	ENSCANG00000039177	APOBEC3C	100	85.789	Colobus_angolensis_palliatus
ENSMFAG00000016792	APOBEC3C	100	68.280	ENSCANG00000033269	-	99	70.109	Colobus_angolensis_palliatus
ENSMFAG00000016792	APOBEC3C	100	74.731	ENSCANG00000032904	-	100	74.731	Colobus_angolensis_palliatus
ENSMFAG00000016792	APOBEC3C	97	41.398	ENSDNOG00000044642	-	99	41.398	Dasypus_novemcinctus
ENSMFAG00000016792	APOBEC3C	100	43.137	ENSEASG00005018641	-	100	43.137	Equus_asinus_asinus
ENSMFAG00000016792	APOBEC3C	98	47.973	ENSECAG00000006071	-	100	46.703	Equus_caballus
ENSMFAG00000016792	APOBEC3C	100	77.368	ENSGGOG00000036587	-	100	77.368	Gorilla_gorilla
ENSMFAG00000016792	APOBEC3C	100	72.581	ENSGGOG00000038678	APOBEC3F	100	72.581	Gorilla_gorilla
ENSMFAG00000016792	APOBEC3C	98	43.915	ENSHGLG00000017315	-	87	43.915	Heterocephalus_glaber_female
ENSMFAG00000016792	APOBEC3C	98	44.149	ENSHGLG00100003105	-	94	44.149	Heterocephalus_glaber_male
ENSMFAG00000016792	APOBEC3C	100	76.882	ENSMMUG00000004017	APOBEC3F	100	76.882	Macaca_mulatta
ENSMFAG00000016792	APOBEC3C	97	97.283	ENSMMUG00000004018	APOBEC3C	95	97.283	Macaca_mulatta
ENSMFAG00000016792	APOBEC3C	100	94.211	ENSMNEG00000045196	APOBEC3C	100	94.211	Macaca_nemestrina
ENSMFAG00000016792	APOBEC3C	100	75.806	ENSMNEG00000043316	APOBEC3D	100	75.806	Macaca_nemestrina
ENSMFAG00000016792	APOBEC3C	100	91.053	ENSMLEG00000036992	APOBEC3C	100	91.053	Mandrillus_leucophaeus
ENSMFAG00000016792	APOBEC3C	100	76.344	ENSMLEG00000029642	APOBEC3F	100	76.344	Mandrillus_leucophaeus
ENSMFAG00000016792	APOBEC3C	99	53.723	ENSMICG00000042615	-	89	53.723	Microcebus_murinus
ENSMFAG00000016792	APOBEC3C	97	45.550	ENSMLUG00000023676	-	99	45.550	Myotis_lucifugus
ENSMFAG00000016792	APOBEC3C	100	77.368	ENSNLEG00000028392	APOBEC3C	100	77.368	Nomascus_leucogenys
ENSMFAG00000016792	APOBEC3C	100	59.474	ENSNLEG00000035811	-	100	59.474	Nomascus_leucogenys
ENSMFAG00000016792	APOBEC3C	98	45.989	ENSOGAG00000032498	-	99	45.989	Otolemur_garnettii
ENSMFAG00000016792	APOBEC3C	98	45.714	ENSOGAG00000033404	-	99	45.714	Otolemur_garnettii
ENSMFAG00000016792	APOBEC3C	98	43.850	ENSOGAG00000030300	-	97	43.850	Otolemur_garnettii
ENSMFAG00000016792	APOBEC3C	100	82.632	ENSPPAG00000014118	APOBEC3C	100	82.632	Pan_paniscus
ENSMFAG00000016792	APOBEC3C	100	71.579	ENSPPAG00000028218	-	100	71.579	Pan_paniscus
ENSMFAG00000016792	APOBEC3C	97	48.108	ENSPPRG00000003726	-	98	48.108	Panthera_pardus
ENSMFAG00000016792	APOBEC3C	100	72.043	ENSPTRG00000014385	APOBEC3C	100	72.043	Pan_troglodytes
ENSMFAG00000016792	APOBEC3C	100	71.579	ENSPTRG00000041588	APOBEC3D	100	71.579	Pan_troglodytes
ENSMFAG00000016792	APOBEC3C	100	90.526	ENSPANG00000010775	APOBEC3F	100	90.526	Papio_anubis
ENSMFAG00000016792	APOBEC3C	100	80.000	ENSPPYG00000011832	APOBEC3C	100	80.000	Pongo_abelii
ENSMFAG00000016792	APOBEC3C	66	54.400	ENSPCOG00000022067	-	95	54.400	Propithecus_coquereli
ENSMFAG00000016792	APOBEC3C	69	54.887	ENSPCOG00000018072	-	100	54.887	Propithecus_coquereli
ENSMFAG00000016792	APOBEC3C	94	47.967	ENSPVAG00000009461	-	71	47.967	Pteropus_vampyrus
ENSMFAG00000016792	APOBEC3C	100	73.656	ENSRBIG00000030834	-	100	73.656	Rhinopithecus_bieti
ENSMFAG00000016792	APOBEC3C	100	82.105	ENSRBIG00000030323	-	100	82.105	Rhinopithecus_bieti
ENSMFAG00000016792	APOBEC3C	100	73.889	ENSRBIG00000042297	-	99	76.433	Rhinopithecus_bieti
ENSMFAG00000016792	APOBEC3C	100	73.333	ENSRROG00000029996	-	100	73.333	Rhinopithecus_roxellana
ENSMFAG00000016792	APOBEC3C	100	82.105	ENSRROG00000029045	APOBEC3C	100	82.105	Rhinopithecus_roxellana
ENSMFAG00000016792	APOBEC3C	100	73.118	ENSRROG00000028557	-	100	73.118	Rhinopithecus_roxellana
ENSMFAG00000016792	APOBEC3C	100	65.789	ENSSBOG00000032780	-	100	65.789	Saimiri_boliviensis_boliviensis
ENSMFAG00000016792	APOBEC3C	85	50.311	ENSUAMG00000004433	-	89	50.311	Ursus_americanus
ENSMFAG00000016792	APOBEC3C	86	51.220	ENSUMAG00000014441	-	76	51.220	Ursus_maritimus
ENSMFAG00000016792	APOBEC3C	77	48.993	ENSVVUG00000014628	-	91	48.630	Vulpes_vulpes