EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMFAG00000025726 (Gene tree)
Gene ID: 102142011
Gene Symbol: SRRM1
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Minus strand
Length: 29835 bases
Position: chr1:203678731-203708565
Accession: 102142011
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000013193	PWI	PF01480.17	9.3e-30	1	1
ENSMFAP00000013154	PWI	PF01480.17	1e-29	1	1
ENSMFAP00000013143	PWI	PF01480.17	1e-29	1	1
ENSMFAP00000013095	PWI	PF01480.17	8.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000062184	SRRM1-202	4056	XM_005544413	ENSMFAP00000013143	918 (aa)	XP_005544470	A0A2K5UL84
ENSMFAT00000062219	SRRM1-203	4014	XM_005544416	ENSMFAP00000013154	904 (aa)	XP_005544473	A0A2K5UL68
ENSMFAT00000061967	SRRM1-201	4186	XM_005544422	ENSMFAP00000013095	835 (aa)	XP_005544479	A0A2K5UL26
ENSMFAT00000062377	SRRM1-204	2451	-	ENSMFAP00000013193	816 (aa)	-	A0A2K5ULB8

Gene Model

Click here to download ENSMFAG00000025726's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf03013	RNA transport	KEGG
mcf03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000025726's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMFAG00000025726	SRRM1	86	77.617	ENSMFAG00000038841	-	61	80.684

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000025726	SRRM1	100	99.668	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSMFAG00000025726	SRRM1	100	97.603	ENSAMEG00000010075	SRRM1	100	97.603	Ailuropoda_melanoleuca
ENSMFAG00000025726	SRRM1	54	69.758	ENSAPLG00000002066	SRRM1	59	76.512	Anas_platyrhynchos
ENSMFAG00000025726	SRRM1	100	98.693	ENSANAG00000035606	SRRM1	100	98.693	Aotus_nancymaae
ENSMFAG00000025726	SRRM1	100	97.566	ENSBTAG00000013772	SRRM1	56	96.436	Bos_taurus
ENSMFAG00000025726	SRRM1	100	97.712	ENSCJAG00000020822	SRRM1	100	97.929	Callithrix_jacchus
ENSMFAG00000025726	SRRM1	100	98.009	ENSCAFG00020020948	SRRM1	100	98.009	Canis_lupus_dingo
ENSMFAG00000025726	SRRM1	96	89.245	ENSCAFG00020000003	-	98	89.322	Canis_lupus_dingo
ENSMFAG00000025726	SRRM1	100	98.009	ENSTSYG00000006782	SRRM1	100	98.009	Carlito_syrichta
ENSMFAG00000025726	SRRM1	100	94.132	ENSCAPG00000011473	SRRM1	100	94.621	Cavia_aperea
ENSMFAG00000025726	SRRM1	100	98.451	ENSCCAG00000029474	SRRM1	100	98.451	Cebus_capucinus
ENSMFAG00000025726	SRRM1	100	100.000	ENSCATG00000031303	SRRM1	100	100.000	Cercocebus_atys
ENSMFAG00000025726	SRRM1	79	97.183	ENSCHOG00000000027	SRRM1	73	97.222	Choloepus_hoffmanni
ENSMFAG00000025726	SRRM1	100	99.668	ENSCANG00000028271	SRRM1	100	99.668	Colobus_angolensis_palliatus
ENSMFAG00000025726	SRRM1	96	93.552	ENSDNOG00000049141	SRRM1	98	93.552	Dasypus_novemcinctus
ENSMFAG00000025726	SRRM1	100	96.950	ENSEASG00005004270	SRRM1	100	96.950	Equus_asinus_asinus
ENSMFAG00000025726	SRRM1	100	97.124	ENSECAG00000026981	SRRM1	100	97.124	Equus_caballus
ENSMFAG00000025726	SRRM1	100	98.119	ENSFCAG00000000678	-	100	98.119	Felis_catus
ENSMFAG00000025726	SRRM1	100	99.632	ENSGGOG00000005209	SRRM1	100	99.632	Gorilla_gorilla
ENSMFAG00000025726	SRRM1	100	98.257	ENSSTOG00000014640	SRRM1	100	98.257	Ictidomys_tridecemlineatus
ENSMFAG00000025726	SRRM1	100	99.889	ENSMMUG00000006645	SRRM1	100	99.889	Macaca_mulatta
ENSMFAG00000025726	SRRM1	100	100.000	ENSMNEG00000039415	SRRM1	100	100.000	Macaca_nemestrina
ENSMFAG00000025726	SRRM1	59	70.709	ENSMLEG00000032221	-	61	73.384	Mandrillus_leucophaeus
ENSMFAG00000025726	SRRM1	72	100.000	ENSMLEG00000038030	-	100	94.363	Mandrillus_leucophaeus
ENSMFAG00000025726	SRRM1	100	98.366	ENSMICG00000006553	SRRM1	100	98.366	Microcebus_murinus
ENSMFAG00000025726	SRRM1	96	94.869	ENSMLUG00000006246	SRRM1	87	94.869	Myotis_lucifugus
ENSMFAG00000025726	SRRM1	100	99.755	ENSNLEG00000008966	SRRM1	100	99.755	Nomascus_leucogenys
ENSMFAG00000025726	SRRM1	81	81.250	ENSMEUG00000014704	SRRM1	60	88.095	Notamacropus_eugenii
ENSMFAG00000025726	SRRM1	100	97.168	ENSOGAG00000010210	SRRM1	100	97.168	Otolemur_garnettii
ENSMFAG00000025726	SRRM1	92	97.759	ENSOARG00000006453	SRRM1	57	97.546	Ovis_aries
ENSMFAG00000025726	SRRM1	100	99.558	ENSPPAG00000043918	SRRM1	100	99.558	Pan_paniscus
ENSMFAG00000025726	SRRM1	100	98.119	ENSPPRG00000002509	SRRM1	100	98.119	Panthera_pardus
ENSMFAG00000025726	SRRM1	100	90.761	ENSPTIG00000008778	-	100	90.761	Panthera_tigris_altaica
ENSMFAG00000025726	SRRM1	100	99.673	ENSPTRG00000000349	SRRM1	100	99.673	Pan_troglodytes
ENSMFAG00000025726	SRRM1	61	77.255	ENSPANG00000035568	-	59	78.427	Papio_anubis
ENSMFAG00000025726	SRRM1	100	100.000	ENSPANG00000010194	SRRM1	100	100.000	Papio_anubis
ENSMFAG00000025726	SRRM1	100	98.803	ENSPPYG00000001716	SRRM1	100	98.803	Pongo_abelii
ENSMFAG00000025726	SRRM1	100	97.606	ENSPCOG00000021311	SRRM1	100	97.606	Propithecus_coquereli
ENSMFAG00000025726	SRRM1	100	97.277	ENSPVAG00000005836	SRRM1	100	97.277	Pteropus_vampyrus
ENSMFAG00000025726	SRRM1	100	93.091	ENSRBIG00000035461	SRRM1	99	93.023	Rhinopithecus_bieti
ENSMFAG00000025726	SRRM1	100	99.779	ENSRROG00000035151	SRRM1	100	99.779	Rhinopithecus_roxellana
ENSMFAG00000025726	SRRM1	100	96.950	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSMFAG00000025726	SRRM1	100	90.419	ENSSARG00000013718	SRRM1	91	90.419	Sorex_araneus
ENSMFAG00000025726	SRRM1	66	73.693	ENSSPUG00000015890	SRRM1	57	82.841	Sphenodon_punctatus
ENSMFAG00000025726	SRRM1	100	97.725	ENSSSCG00000032947	SRRM1	100	97.838	Sus_scrofa
ENSMFAG00000025726	SRRM1	100	96.407	ENSTTRG00000009365	SRRM1	100	96.707	Tursiops_truncatus
ENSMFAG00000025726	SRRM1	92	96.871	ENSUMAG00000013121	SRRM1	95	98.747	Ursus_maritimus
ENSMFAG00000025726	SRRM1	96	93.537	ENSVPAG00000007698	SRRM1	100	93.537	Vicugna_pacos
ENSMFAG00000025726	SRRM1	96	98.469	ENSVVUG00000026966	SRRM1	97	95.419	Vulpes_vulpes