EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMFAG00000032599 (Gene tree)
Gene ID: 101926618
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Minus strand
Length: 135816 bases
Position: chr2:44430144-44565959
Accession: 101926618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000019234	XRN_N	PF03159.18	6.2e-96	1	1
ENSMFAP00000019226	XRN_N	PF03159.18	6.3e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000069782	XRN1-202	10075	XM_005545991	ENSMFAP00000019234	1694 (aa)	XP_005546048	A0A2K5V3C7
ENSMFAT00000069774	XRN1-201	10119	XM_005545989	ENSMFAP00000019226	1707 (aa)	XP_005546046	A0A2K5V3D7

Gene Model

Click here to download ENSMFAG00000032599's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf03008	Ribosome biogenesis in eukaryotes	KEGG
mcf03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000032599's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000032599	XRN1	100	97.580	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSMFAG00000032599	XRN1	95	72.786	ENSAPOG00000000622	xrn1	93	76.333	Acanthochromis_polyacanthus
ENSMFAG00000032599	XRN1	100	92.104	ENSAMEG00000012538	XRN1	100	92.104	Ailuropoda_melanoleuca
ENSMFAG00000032599	XRN1	95	72.498	ENSACIG00000001057	xrn1	94	72.661	Amphilophus_citrinellus
ENSMFAG00000032599	XRN1	100	61.117	ENSAOCG00000014097	xrn1	95	68.675	Amphiprion_ocellaris
ENSMFAG00000032599	XRN1	100	60.710	ENSAPEG00000006620	xrn1	98	62.963	Amphiprion_percula
ENSMFAG00000032599	XRN1	94	71.281	ENSATEG00000009752	xrn1	97	71.247	Anabas_testudineus
ENSMFAG00000032599	XRN1	99	76.423	ENSAPLG00000004905	XRN1	100	76.423	Anas_platyrhynchos
ENSMFAG00000032599	XRN1	100	72.635	ENSACAG00000004985	XRN1	100	72.635	Anolis_carolinensis
ENSMFAG00000032599	XRN1	100	96.812	ENSANAG00000029013	XRN1	100	96.812	Aotus_nancymaae
ENSMFAG00000032599	XRN1	100	60.604	ENSACLG00000004806	xrn1	96	62.159	Astatotilapia_calliptera
ENSMFAG00000032599	XRN1	99	60.837	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSMFAG00000032599	XRN1	100	92.501	ENSBTAG00000011524	XRN1	100	92.326	Bos_taurus
ENSMFAG00000032599	XRN1	71	39.210	WBGene00012730	xrn-1	80	39.256	Caenorhabditis_elegans
ENSMFAG00000032599	XRN1	100	96.989	ENSCJAG00000001872	XRN1	100	96.989	Callithrix_jacchus
ENSMFAG00000032599	XRN1	100	93.380	ENSCAFG00000007783	XRN1	100	93.380	Canis_familiaris
ENSMFAG00000032599	XRN1	100	92.374	ENSCAFG00020009120	XRN1	99	94.286	Canis_lupus_dingo
ENSMFAG00000032599	XRN1	99	90.515	ENSCHIG00000019192	XRN1	99	90.341	Capra_hircus
ENSMFAG00000032599	XRN1	100	94.454	ENSTSYG00000002705	XRN1	100	94.454	Carlito_syrichta
ENSMFAG00000032599	XRN1	55	76.617	ENSCAPG00000004604	-	99	76.617	Cavia_aperea
ENSMFAG00000032599	XRN1	100	97.462	ENSCCAG00000034800	XRN1	99	99.049	Cebus_capucinus
ENSMFAG00000032599	XRN1	100	99.824	ENSCATG00000041794	XRN1	100	99.824	Cercocebus_atys
ENSMFAG00000032599	XRN1	100	88.171	ENSCLAG00000001451	XRN1	99	96.197	Chinchilla_lanigera
ENSMFAG00000032599	XRN1	100	99.649	ENSCSAG00000011265	XRN1	100	99.649	Chlorocebus_sabaeus
ENSMFAG00000032599	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSMFAG00000032599	XRN1	71	45.171	ENSCSAVG00000008584	-	98	44.739	Ciona_savignyi
ENSMFAG00000032599	XRN1	100	99.292	ENSCANG00000037495	XRN1	100	99.292	Colobus_angolensis_palliatus
ENSMFAG00000032599	XRN1	100	88.099	ENSCGRG00001019411	Xrn1	99	96.355	Cricetulus_griseus_chok1gshd
ENSMFAG00000032599	XRN1	100	88.099	ENSCGRG00000012464	Xrn1	99	96.355	Cricetulus_griseus_crigri
ENSMFAG00000032599	XRN1	100	56.020	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSMFAG00000032599	XRN1	67	67.663	ENSCVAG00000013089	xrn1	99	71.958	Cyprinodon_variegatus
ENSMFAG00000032599	XRN1	99	63.050	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSMFAG00000032599	XRN1	100	87.384	ENSDORG00000013833	Xrn1	100	87.326	Dipodomys_ordii
ENSMFAG00000032599	XRN1	75	39.860	FBgn0020261	pcm	76	39.768	Drosophila_melanogaster
ENSMFAG00000032599	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSMFAG00000032599	XRN1	100	93.263	ENSEASG00005002687	XRN1	99	96.672	Equus_asinus_asinus
ENSMFAG00000032599	XRN1	100	93.263	ENSECAG00000008301	XRN1	100	93.263	Equus_caballus
ENSMFAG00000032599	XRN1	92	83.382	ENSEEUG00000011323	XRN1	92	83.382	Erinaceus_europaeus
ENSMFAG00000032599	XRN1	100	61.696	ENSELUG00000000169	xrn1	94	63.571	Esox_lucius
ENSMFAG00000032599	XRN1	100	89.813	ENSFCAG00000027589	XRN1	99	96.484	Felis_catus
ENSMFAG00000032599	XRN1	100	74.902	ENSFALG00000007021	XRN1	100	74.958	Ficedula_albicollis
ENSMFAG00000032599	XRN1	100	89.094	ENSFDAG00000020494	XRN1	99	95.721	Fukomys_damarensis
ENSMFAG00000032599	XRN1	84	68.452	ENSGMOG00000006396	xrn1	80	68.452	Gadus_morhua
ENSMFAG00000032599	XRN1	100	75.239	ENSGALG00000002706	XRN1	100	75.239	Gallus_gallus
ENSMFAG00000032599	XRN1	100	59.795	ENSGACG00000014328	xrn1	96	61.392	Gasterosteus_aculeatus
ENSMFAG00000032599	XRN1	95	78.300	ENSGAGG00000017535	XRN1	99	78.300	Gopherus_agassizii
ENSMFAG00000032599	XRN1	100	97.774	ENSGGOG00000008047	XRN1	100	97.774	Gorilla_gorilla
ENSMFAG00000032599	XRN1	100	60.673	ENSHBUG00000005908	xrn1	98	72.690	Haplochromis_burtoni
ENSMFAG00000032599	XRN1	100	90.311	ENSHGLG00000014476	XRN1	99	96.672	Heterocephalus_glaber_female
ENSMFAG00000032599	XRN1	100	90.311	ENSHGLG00100015130	XRN1	99	96.672	Heterocephalus_glaber_male
ENSMFAG00000032599	XRN1	97	70.024	ENSHCOG00000014062	xrn1	96	70.174	Hippocampus_comes
ENSMFAG00000032599	XRN1	99	62.723	ENSIPUG00000015229	xrn1	96	64.766	Ictalurus_punctatus
ENSMFAG00000032599	XRN1	100	91.975	ENSSTOG00000013552	XRN1	99	97.940	Ictidomys_tridecemlineatus
ENSMFAG00000032599	XRN1	98	87.119	ENSJJAG00000010863	Xrn1	99	94.194	Jaculus_jaculus
ENSMFAG00000032599	XRN1	94	61.355	ENSKMAG00000021356	xrn1	94	75.949	Kryptolebias_marmoratus
ENSMFAG00000032599	XRN1	100	59.762	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSMFAG00000032599	XRN1	100	69.989	ENSLACG00000009020	XRN1	97	71.091	Latimeria_chalumnae
ENSMFAG00000032599	XRN1	100	66.034	ENSLOCG00000007944	xrn1	98	66.237	Lepisosteus_oculatus
ENSMFAG00000032599	XRN1	63	96.258	ENSLAFG00000015426	XRN1	100	96.258	Loxodonta_africana
ENSMFAG00000032599	XRN1	100	99.941	ENSMMUG00000014038	XRN1	100	99.941	Macaca_mulatta
ENSMFAG00000032599	XRN1	100	99.707	ENSMNEG00000034217	XRN1	100	99.707	Macaca_nemestrina
ENSMFAG00000032599	XRN1	94	70.686	ENSMAMG00000013219	xrn1	94	77.320	Mastacembelus_armatus
ENSMFAG00000032599	XRN1	100	60.308	ENSMZEG00005015099	xrn1	96	62.040	Maylandia_zebra
ENSMFAG00000032599	XRN1	99	75.174	ENSMGAG00000006333	XRN1	100	75.174	Meleagris_gallopavo
ENSMFAG00000032599	XRN1	100	94.582	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSMFAG00000032599	XRN1	58	95.404	ENSMOCG00000008665	Xrn1	99	95.404	Microtus_ochrogaster
ENSMFAG00000032599	XRN1	100	82.614	ENSMODG00000021236	XRN1	100	82.322	Monodelphis_domestica
ENSMFAG00000032599	XRN1	100	58.007	ENSMALG00000004098	xrn1	100	57.616	Monopterus_albus
ENSMFAG00000032599	XRN1	96	95.419	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSMFAG00000032599	XRN1	100	87.002	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSMFAG00000032599	XRN1	100	86.713	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSMFAG00000032599	XRN1	100	86.944	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSMFAG00000032599	XRN1	100	93.790	ENSMPUG00000012040	XRN1	100	93.790	Mustela_putorius_furo
ENSMFAG00000032599	XRN1	100	89.665	ENSMLUG00000016885	XRN1	100	89.550	Myotis_lucifugus
ENSMFAG00000032599	XRN1	58	91.759	ENSNGAG00000023964	Xrn1	99	92.051	Nannospalax_galili
ENSMFAG00000032599	XRN1	100	98.170	ENSNLEG00000004726	XRN1	100	98.170	Nomascus_leucogenys
ENSMFAG00000032599	XRN1	77	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSMFAG00000032599	XRN1	79	84.800	ENSOPRG00000007337	-	78	84.800	Ochotona_princeps
ENSMFAG00000032599	XRN1	100	61.425	ENSONIG00000016673	xrn1	99	64.710	Oreochromis_niloticus
ENSMFAG00000032599	XRN1	92	78.016	ENSOANG00000006735	XRN1	100	77.890	Ornithorhynchus_anatinus
ENSMFAG00000032599	XRN1	100	90.544	ENSOCUG00000001861	XRN1	100	90.372	Oryctolagus_cuniculus
ENSMFAG00000032599	XRN1	100	60.963	ENSORLG00000013005	xrn1	100	60.514	Oryzias_latipes
ENSMFAG00000032599	XRN1	100	61.102	ENSORLG00020005559	xrn1	100	61.357	Oryzias_latipes_hni
ENSMFAG00000032599	XRN1	100	61.136	ENSORLG00015022523	xrn1	96	62.300	Oryzias_latipes_hsok
ENSMFAG00000032599	XRN1	93	72.742	ENSOMEG00000015397	xrn1	99	72.742	Oryzias_melastigma
ENSMFAG00000032599	XRN1	100	91.393	ENSOGAG00000000170	XRN1	100	91.393	Otolemur_garnettii
ENSMFAG00000032599	XRN1	99	93.021	ENSOARG00000006343	XRN1	99	92.845	Ovis_aries
ENSMFAG00000032599	XRN1	100	97.657	ENSPPAG00000010180	XRN1	100	97.657	Pan_paniscus
ENSMFAG00000032599	XRN1	100	93.923	ENSPPRG00000007125	XRN1	100	93.923	Panthera_pardus
ENSMFAG00000032599	XRN1	100	93.982	ENSPTIG00000021081	XRN1	100	93.982	Panthera_tigris_altaica
ENSMFAG00000032599	XRN1	100	97.774	ENSPTRG00000015482	XRN1	100	97.774	Pan_troglodytes
ENSMFAG00000032599	XRN1	100	99.824	ENSPANG00000010638	XRN1	100	99.824	Papio_anubis
ENSMFAG00000032599	XRN1	100	77.099	ENSPSIG00000018050	XRN1	100	77.213	Pelodiscus_sinensis
ENSMFAG00000032599	XRN1	57	77.394	ENSPMGG00000002648	xrn1	98	78.493	Periophthalmus_magnuspinnatus
ENSMFAG00000032599	XRN1	58	96.197	ENSPEMG00000020610	Xrn1	99	96.197	Peromyscus_maniculatus_bairdii
ENSMFAG00000032599	XRN1	65	50.717	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSMFAG00000032599	XRN1	100	81.876	ENSPCIG00000028735	XRN1	99	90.194	Phascolarctos_cinereus
ENSMFAG00000032599	XRN1	91	64.702	ENSPFOG00000013932	xrn1	99	65.083	Poecilia_formosa
ENSMFAG00000032599	XRN1	91	63.458	ENSPLAG00000021653	xrn1	99	64.295	Poecilia_latipinna
ENSMFAG00000032599	XRN1	89	64.295	ENSPMEG00000003076	xrn1	95	64.809	Poecilia_mexicana
ENSMFAG00000032599	XRN1	100	60.763	ENSPREG00000021147	xrn1	100	60.427	Poecilia_reticulata
ENSMFAG00000032599	XRN1	100	97.891	ENSPPYG00000014172	XRN1	100	97.891	Pongo_abelii
ENSMFAG00000032599	XRN1	90	81.865	ENSPCAG00000005638	XRN1	100	81.865	Procavia_capensis
ENSMFAG00000032599	XRN1	100	95.103	ENSPCOG00000013089	XRN1	99	97.529	Propithecus_coquereli
ENSMFAG00000032599	XRN1	96	92.634	ENSPVAG00000016265	XRN1	96	92.634	Pteropus_vampyrus
ENSMFAG00000032599	XRN1	96	71.282	ENSPNYG00000010570	xrn1	94	71.338	Pundamilia_nyererei
ENSMFAG00000032599	XRN1	99	60.657	ENSPNAG00000023531	xrn1	96	62.048	Pygocentrus_nattereri
ENSMFAG00000032599	XRN1	100	87.695	ENSRNOG00000042951	Xrn1	100	87.579	Rattus_norvegicus
ENSMFAG00000032599	XRN1	100	98.594	ENSRBIG00000041227	XRN1	100	98.594	Rhinopithecus_bieti
ENSMFAG00000032599	XRN1	67	54.496	YGL173C	XRN1	81	34.434	Saccharomyces_cerevisiae
ENSMFAG00000032599	XRN1	100	96.871	ENSSBOG00000029561	XRN1	100	96.871	Saimiri_boliviensis_boliviensis
ENSMFAG00000032599	XRN1	99	82.022	ENSSHAG00000016207	XRN1	100	81.775	Sarcophilus_harrisii
ENSMFAG00000032599	XRN1	100	61.454	ENSSFOG00015024211	xrn1	97	63.259	Scleropages_formosus
ENSMFAG00000032599	XRN1	94	72.617	ENSSMAG00000016534	xrn1	95	72.617	Scophthalmus_maximus
ENSMFAG00000032599	XRN1	93	72.254	ENSSDUG00000010306	xrn1	91	72.254	Seriola_dumerili
ENSMFAG00000032599	XRN1	95	71.815	ENSSLDG00000021543	xrn1	97	71.815	Seriola_lalandi_dorsalis
ENSMFAG00000032599	XRN1	68	85.434	ENSSARG00000007741	-	83	85.434	Sorex_araneus
ENSMFAG00000032599	XRN1	100	77.191	ENSTGUG00000008498	XRN1	100	77.249	Taeniopygia_guttata
ENSMFAG00000032599	XRN1	100	59.009	ENSTRUG00000004895	xrn1	96	75.574	Takifugu_rubripes
ENSMFAG00000032599	XRN1	96	68.526	ENSTNIG00000017615	xrn1	96	60.580	Tetraodon_nigroviridis
ENSMFAG00000032599	XRN1	84	97.844	ENSTBEG00000003256	XRN1	89	87.719	Tupaia_belangeri
ENSMFAG00000032599	XRN1	100	89.338	ENSTTRG00000012914	XRN1	100	89.104	Tursiops_truncatus
ENSMFAG00000032599	XRN1	100	92.916	ENSUAMG00000001608	XRN1	99	94.286	Ursus_americanus
ENSMFAG00000032599	XRN1	100	94.789	ENSUMAG00000013625	XRN1	100	94.789	Ursus_maritimus
ENSMFAG00000032599	XRN1	100	90.920	ENSVPAG00000004690	XRN1	100	90.920	Vicugna_pacos
ENSMFAG00000032599	XRN1	100	94.376	ENSVVUG00000024461	XRN1	99	97.464	Vulpes_vulpes
ENSMFAG00000032599	XRN1	100	69.298	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSMFAG00000032599	XRN1	100	61.415	ENSXCOG00000007917	xrn1	95	62.902	Xiphophorus_couchianus
ENSMFAG00000032599	XRN1	92	71.883	ENSXMAG00000018320	xrn1	98	71.964	Xiphophorus_maculatus