EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMFAG00000034223 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1-like
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Plus strand
Length: 4739 bases
Position: chr12:79195383-79200121
Accession: 102140385
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000035649	RRM_1	PF00076.22	2e-30	1	2
ENSMFAP00000035649	RRM_1	PF00076.22	2e-30	2	2
ENSMFAP00000035659	RRM_1	PF00076.22	6.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000009888	-	4367	XM_015432491	ENSMFAP00000035649	298 (aa)	XP_015287977	A0A2K5WF18
ENSMFAT00000009898	-	522	-	ENSMFAP00000035659	173 (aa)	-	A0A2K5WF30

Gene Model

Click here to download ENSMFAG00000034223's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000034223's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMFAG00000034223	-	52	69.231	ENSMFAG00000039423	SRSF9	79	69.231
ENSMFAG00000034223	-	100	97.688	ENSMFAG00000040003	-	100	97.688
ENSMFAG00000034223	-	65	40.094	ENSMFAG00000036925	SRSF6	58	39.234
ENSMFAG00000034223	-	54	45.181	ENSMFAG00000002393	SRSF5	86	41.129

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000034223	-	61	88.462	ENSACIG00000002623	-	95	89.560	Amphilophus_citrinellus
ENSMFAG00000034223	-	65	88.601	ENSACLG00000005676	-	99	81.148	Astatotilapia_calliptera
ENSMFAG00000034223	-	79	80.738	ENSACLG00000021693	-	95	80.952	Astatotilapia_calliptera
ENSMFAG00000034223	-	62	61.340	WBGene00004700	rsp-3	75	60.513	Caenorhabditis_elegans
ENSMFAG00000034223	-	50	77.011	ENSCING00000000257	-	75	61.832	Ciona_intestinalis
ENSMFAG00000034223	-	61	71.978	ENSCING00000007375	-	76	71.978	Ciona_intestinalis
ENSMFAG00000034223	-	51	70.455	ENSCSAVG00000003567	-	76	60.769	Ciona_savignyi
ENSMFAG00000034223	-	61	70.330	ENSCSAVG00000006093	-	91	69.780	Ciona_savignyi
ENSMFAG00000034223	-	61	66.667	FBgn0283477	SF2	73	66.667	Drosophila_melanogaster
ENSMFAG00000034223	-	88	67.097	ENSEBUG00000009582	-	82	78.125	Eptatretus_burgeri
ENSMFAG00000034223	-	65	85.279	ENSFHEG00000017425	-	97	84.865	Fundulus_heteroclitus
ENSMFAG00000034223	-	62	88.108	ENSGMOG00000010606	-	97	88.108	Gadus_morhua
ENSMFAG00000034223	-	66	85.149	ENSGAFG00000000609	-	98	81.526	Gambusia_affinis
ENSMFAG00000034223	-	65	89.119	ENSGAFG00000012721	-	99	81.557	Gambusia_affinis
ENSMFAG00000034223	-	62	87.568	ENSGACG00000011094	-	97	87.568	Gasterosteus_aculeatus
ENSMFAG00000034223	-	79	80.913	ENSHBUG00000015576	-	95	81.275	Haplochromis_burtoni
ENSMFAG00000034223	-	66	78.894	ENSHCOG00000008016	-	79	77.889	Hippocampus_comes
ENSMFAG00000034223	-	65	85.500	ENSMZEG00005019071	-	98	83.422	Maylandia_zebra
ENSMFAG00000034223	-	65	88.601	ENSMZEG00005007947	-	99	81.148	Maylandia_zebra
ENSMFAG00000034223	-	65	87.629	ENSMMOG00000018849	-	96	84.774	Mola_mola
ENSMFAG00000034223	-	65	85.052	ENSNBRG00000008134	-	95	82.377	Neolamprologus_brichardi
ENSMFAG00000034223	-	65	88.601	ENSNBRG00000019981	-	99	81.148	Neolamprologus_brichardi
ENSMFAG00000034223	-	56	69.048	ENSOPRG00000004745	-	98	68.452	Ochotona_princeps
ENSMFAG00000034223	-	66	83.495	ENSONIG00000004857	-	98	81.423	Oreochromis_niloticus
ENSMFAG00000034223	-	93	87.578	ENSOANG00000007320	-	99	85.380	Ornithorhynchus_anatinus
ENSMFAG00000034223	-	60	55.618	ENSOCUG00000026856	-	100	57.303	Oryctolagus_cuniculus
ENSMFAG00000034223	-	65	87.179	ENSORLG00000005314	-	94	84.082	Oryzias_latipes
ENSMFAG00000034223	-	65	87.179	ENSORLG00015015497	-	94	84.082	Oryzias_latipes_hsok
ENSMFAG00000034223	-	65	86.000	ENSOMEG00000017711	-	94	82.800	Oryzias_melastigma
ENSMFAG00000034223	-	78	71.193	ENSPLAG00000019613	-	71	88.889	Poecilia_latipinna
ENSMFAG00000034223	-	65	87.245	ENSPLAG00000019553	-	99	82.500	Poecilia_latipinna
ENSMFAG00000034223	-	66	86.000	ENSPREG00000016792	-	98	82.186	Poecilia_reticulata
ENSMFAG00000034223	-	65	84.653	ENSPNYG00000020651	-	95	80.952	Pundamilia_nyererei
ENSMFAG00000034223	-	65	88.601	ENSPNYG00000017115	-	99	81.148	Pundamilia_nyererei
ENSMFAG00000034223	-	70	93.780	ENSSFOG00015004989	-	72	89.848	Scleropages_formosus
ENSMFAG00000034223	-	66	83.491	ENSSDUG00000003887	-	98	80.153	Seriola_dumerili
ENSMFAG00000034223	-	65	83.938	ENSTRUG00000017058	-	97	80.658	Takifugu_rubripes
ENSMFAG00000034223	-	65	80.412	ENSTNIG00000009993	-	80	80.928	Tetraodon_nigroviridis
ENSMFAG00000034223	-	67	84.314	ENSXCOG00000017888	-	98	82.773	Xiphophorus_couchianus
ENSMFAG00000034223	-	65	87.245	ENSXCOG00000009643	-	99	82.500	Xiphophorus_couchianus
ENSMFAG00000034223	-	66	85.572	ENSXMAG00000010797	-	98	81.855	Xiphophorus_maculatus