EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMFAG00000035517 (Gene tree)
Gene ID: 102146659
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Plus strand
Length: 42525 bases
Position: chr11:99565223-99607747
Accession: 102146659
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000021234	LSM	PF01423.22	4.1e-21	1	1
ENSMFAP00000021214	LSM	PF01423.22	4.2e-21	1	1
ENSMFAP00000021223	LSM	PF01423.22	1.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000034793	-	384	-	ENSMFAP00000021223	127 (aa)	-	A0A2K5V933
ENSMFAT00000034811	-	476	XM_005571907	ENSMFAP00000021214	86 (aa)	XP_005571964	A0A2K5V908
ENSMFAT00000034783	-	258	-	ENSMFAP00000021234	85 (aa)	-	A0A2K5V930

Gene Model

Click here to download ENSMFAG00000035517's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000035517's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMFAG00000035517	-	52	42.424	ENSMFAG00000031422	RPS15A	51	42.424
ENSMFAG00000035517	-	78	51.515	ENSMFAG00000033073	LSM6	83	51.515
ENSMFAG00000035517	-	69	41.758	ENSMFAG00000002707	SRSF3	96	41.758

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000035517	-	50	97.674	ENSCHIG00000017139	-	87	91.525	Capra_hircus
ENSMFAG00000035517	-	100	100.000	ENSCATG00000003132	-	100	100.000	Cercocebus_atys
ENSMFAG00000035517	-	50	100.000	ENSCPBG00000001948	-	94	91.837	Chrysemys_picta_bellii
ENSMFAG00000035517	-	100	100.000	ENSCANG00000006758	-	100	100.000	Colobus_angolensis_palliatus
ENSMFAG00000035517	-	91	58.974	ENSFCAG00000037511	-	87	61.644	Felis_catus
ENSMFAG00000035517	-	51	90.909	ENSFCAG00000032773	-	70	90.909	Felis_catus
ENSMFAG00000035517	-	57	87.755	ENSGAGG00000014834	-	75	97.727	Gopherus_agassizii
ENSMFAG00000035517	-	51	97.674	ENSHBUG00000008160	-	72	97.674	Haplochromis_burtoni
ENSMFAG00000035517	-	100	100.000	ENSMMUG00000009302	-	100	100.000	Macaca_mulatta
ENSMFAG00000035517	-	100	100.000	ENSMNEG00000030762	-	100	100.000	Macaca_nemestrina
ENSMFAG00000035517	-	100	100.000	ENSMLEG00000033558	-	100	100.000	Mandrillus_leucophaeus
ENSMFAG00000035517	-	100	100.000	ENSNLEG00000005835	-	100	100.000	Nomascus_leucogenys
ENSMFAG00000035517	-	50	97.674	ENSOGAG00000014320	-	100	96.226	Otolemur_garnettii
ENSMFAG00000035517	-	100	100.000	ENSPPAG00000003072	-	100	100.000	Pan_paniscus
ENSMFAG00000035517	-	73	76.190	ENSPPRG00000020147	-	100	76.190	Panthera_pardus
ENSMFAG00000035517	-	100	100.000	ENSPTRG00000005317	-	100	94.488	Pan_troglodytes
ENSMFAG00000035517	-	100	100.000	ENSPANG00000014632	-	100	100.000	Papio_anubis
ENSMFAG00000035517	-	100	100.000	ENSPCIG00000017205	-	100	100.000	Phascolarctos_cinereus
ENSMFAG00000035517	-	53	93.478	ENSPFOG00000020883	-	100	93.478	Poecilia_formosa
ENSMFAG00000035517	-	100	100.000	ENSRBIG00000028811	-	100	100.000	Rhinopithecus_bieti
ENSMFAG00000035517	-	100	100.000	ENSRROG00000031057	-	100	100.000	Rhinopithecus_roxellana
ENSMFAG00000035517	-	64	78.182	ENSVVUG00000003155	-	73	78.182	Vulpes_vulpes