EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMFAG00000036005 (Gene tree)
Gene ID: 102142461
Gene Symbol: ZNF550
Alias: MGC41917
Full Name: zinc finger protein 550
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Minus strand
Length: 26041 bases
Position: chr19:58170384-58196424
Accession: 102142461
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000022215	zf-C2H2	PF00096.26	5.8e-37	1	6
ENSMFAP00000022215	zf-C2H2	PF00096.26	5.8e-37	2	6
ENSMFAP00000022215	zf-C2H2	PF00096.26	5.8e-37	3	6
ENSMFAP00000022215	zf-C2H2	PF00096.26	5.8e-37	4	6
ENSMFAP00000022215	zf-C2H2	PF00096.26	5.8e-37	5	6
ENSMFAP00000022215	zf-C2H2	PF00096.26	5.8e-37	6	6
ENSMFAP00000022213	zf-C2H2	PF00096.26	1.5e-36	1	6
ENSMFAP00000022213	zf-C2H2	PF00096.26	1.5e-36	2	6
ENSMFAP00000022213	zf-C2H2	PF00096.26	1.5e-36	3	6
ENSMFAP00000022213	zf-C2H2	PF00096.26	1.5e-36	4	6
ENSMFAP00000022213	zf-C2H2	PF00096.26	1.5e-36	5	6
ENSMFAP00000022213	zf-C2H2	PF00096.26	1.5e-36	6	6
ENSMFAP00000022215	zf-met	PF12874.7	0.00018	1	1
ENSMFAP00000022213	zf-met	PF12874.7	0.00043	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000030340	ZNF550-202	2102	XM_005590526	ENSMFAP00000022213	417 (aa)	XP_005590583	A0A2K5VBX7
ENSMFAT00000030342	ZNF550-203	1131	-	ENSMFAP00000022215	376 (aa)	-	A0A2K5VBS9
ENSMFAT00000030336	ZNF550-201	378	-	ENSMFAP00000022209	125 (aa)	-	A0A2K5VBU0

Gene Model

Click here to download ENSMFAG00000036005's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000036005's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMFAG00000036005	ZNF550	99	49.558	ENSMFAG00000046200	ZNF225	97	49.115
ENSMFAG00000036005	ZNF550	99	53.333	ENSMFAG00000005779	-	99	53.333
ENSMFAG00000036005	ZNF550	99	62.115	ENSMFAG00000002728	ZNF582	93	62.115
ENSMFAG00000036005	ZNF550	99	59.204	ENSMFAG00000043337	ZNF454	98	59.204
ENSMFAG00000036005	ZNF550	60	54.745	ENSMFAG00000000769	ZNF768	54	51.542
ENSMFAG00000036005	ZNF550	98	57.078	ENSMFAG00000039940	ZNF2	95	57.078
ENSMFAG00000036005	ZNF550	98	44.690	ENSMFAG00000031149	ZNF337	99	44.690
ENSMFAG00000036005	ZNF550	99	56.637	ENSMFAG00000032041	ZNF468	99	56.637
ENSMFAG00000036005	ZNF550	99	50.661	ENSMFAG00000043396	ZNF814	97	50.661
ENSMFAG00000036005	ZNF550	99	48.731	ENSMFAG00000045354	-	96	50.649
ENSMFAG00000036005	ZNF550	99	55.429	ENSMFAG00000001812	ZFP1	98	55.429
ENSMFAG00000036005	ZNF550	99	56.828	ENSMFAG00000031747	ZNF112	74	56.828
ENSMFAG00000036005	ZNF550	99	57.269	ENSMFAG00000037611	ZNF816	97	57.269
ENSMFAG00000036005	ZNF550	89	61.062	ENSMFAG00000008648	-	98	61.062
ENSMFAG00000036005	ZNF550	61	61.951	ENSMFAG00000046052	-	86	61.951
ENSMFAG00000036005	ZNF550	100	41.162	ENSMFAG00000031163	ZNF205	73	41.162
ENSMFAG00000036005	ZNF550	79	55.652	ENSMFAG00000030933	-	92	55.652
ENSMFAG00000036005	ZNF550	99	53.540	ENSMFAG00000033366	-	98	53.540
ENSMFAG00000036005	ZNF550	99	60.500	ENSMFAG00000030846	ZNF829	77	60.500
ENSMFAG00000036005	ZNF550	99	51.190	ENSMFAG00000036858	ZNF317	90	50.833
ENSMFAG00000036005	ZNF550	77	61.905	ENSMFAG00000039215	ZNF233	99	54.425

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000036005	ZNF550	100	95.276	ENSG00000251369	ZNF550	100	95.276	Homo_sapiens
ENSMFAG00000036005	ZNF550	100	99.041	ENSCATG00000020915	ZNF550	100	99.041	Cercocebus_atys
ENSMFAG00000036005	ZNF550	100	63.542	ENSCLAG00000000250	ZNF550	95	68.533	Chinchilla_lanigera
ENSMFAG00000036005	ZNF550	98	98.039	ENSCSAG00000001629	ZNF550	100	98.039	Chlorocebus_sabaeus
ENSMFAG00000036005	ZNF550	100	97.340	ENSCANG00000033735	ZNF550	100	97.340	Colobus_angolensis_palliatus
ENSMFAG00000036005	ZNF550	89	71.848	ENSDNOG00000033330	-	99	71.709	Dasypus_novemcinctus
ENSMFAG00000036005	ZNF550	99	69.029	ENSFCAG00000034766	ZNF550	99	69.029	Felis_catus
ENSMFAG00000036005	ZNF550	100	94.751	ENSGGOG00000014068	ZNF550	100	94.751	Gorilla_gorilla
ENSMFAG00000036005	ZNF550	100	71.599	ENSHGLG00000018048	ZNF550	100	71.599	Heterocephalus_glaber_female
ENSMFAG00000036005	ZNF550	100	99.734	ENSMMUG00000006122	ZNF550	100	99.734	Macaca_mulatta
ENSMFAG00000036005	ZNF550	100	100.000	ENSMNEG00000041366	ZNF550	100	100.000	Macaca_nemestrina
ENSMFAG00000036005	ZNF550	100	98.801	ENSMLEG00000034688	ZNF550	100	98.801	Mandrillus_leucophaeus
ENSMFAG00000036005	ZNF550	100	83.246	ENSMICG00000007561	ZNF550	100	83.246	Microcebus_murinus
ENSMFAG00000036005	ZNF550	99	68.766	ENSPPRG00000013475	ZNF550	99	68.766	Panthera_pardus
ENSMFAG00000036005	ZNF550	100	67.881	ENSPTIG00000018007	ZNF550	80	67.665	Panthera_tigris_altaica
ENSMFAG00000036005	ZNF550	100	94.751	ENSPTRG00000011560	ZNF550	100	94.751	Pan_troglodytes
ENSMFAG00000036005	ZNF550	100	98.404	ENSPANG00000030602	ZNF550	100	98.404	Papio_anubis
ENSMFAG00000036005	ZNF550	100	85.343	ENSPCOG00000018751	ZNF550	100	85.343	Propithecus_coquereli
ENSMFAG00000036005	ZNF550	99	72.115	ENSPVAG00000000908	ZNF550	100	72.115	Pteropus_vampyrus
ENSMFAG00000036005	ZNF550	100	98.561	ENSRBIG00000017275	ZNF550	100	98.561	Rhinopithecus_bieti
ENSMFAG00000036005	ZNF550	100	98.561	ENSRROG00000040063	ZNF550	100	98.561	Rhinopithecus_roxellana
ENSMFAG00000036005	ZNF550	98	78.502	ENSTTRG00000000293	ZNF550	100	78.502	Tursiops_truncatus