EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMFAG00000039369 (Gene tree)
Gene ID: 102126371
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Minus strand
Length: 24457 bases
Position: chr11:11016508-11040964
Accession: 102126371
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000044090	CSD	PF00313.22	6.8e-26	1	1
ENSMFAP00000044087	CSD	PF00313.22	7.9e-26	1	1
ENSMFAP00000044097	CSD	PF00313.22	3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000018379	YBX3-201	2039	XM_005570132	ENSMFAP00000044087	372 (aa)	XP_005570189	A0A2K5X456
ENSMFAT00000018382	YBX3-202	1832	XM_005570134	ENSMFAP00000044090	303 (aa)	XP_005570191	A0A2K5X3V1
ENSMFAT00000018389	YBX3-203	1107	-	ENSMFAP00000044097	368 (aa)	-	A0A2K5X468

Gene Model

Click here to download ENSMFAG00000039369's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000039369's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000039369	YBX3	100	98.925	ENSG00000060138	YBX3	100	98.925	Homo_sapiens
ENSMFAG00000039369	YBX3	96	85.475	ENSAMEG00000009393	YBX3	95	89.412	Ailuropoda_melanoleuca
ENSMFAG00000039369	YBX3	77	64.685	ENSAPLG00000003147	YBX3	70	100.000	Anas_platyrhynchos
ENSMFAG00000039369	YBX3	100	96.505	ENSANAG00000024492	-	100	97.785	Aotus_nancymaae
ENSMFAG00000039369	YBX3	98	86.154	ENSANAG00000033366	-	93	86.154	Aotus_nancymaae
ENSMFAG00000039369	YBX3	100	81.395	ENSBTAG00000009663	YBX3	100	78.329	Bos_taurus
ENSMFAG00000039369	YBX3	96	71.034	ENSCJAG00000033824	-	98	90.541	Callithrix_jacchus
ENSMFAG00000039369	YBX3	100	95.430	ENSCJAG00000021660	-	100	95.430	Callithrix_jacchus
ENSMFAG00000039369	YBX3	77	92.014	ENSCAFG00000013401	YBX3	100	91.743	Canis_familiaris
ENSMFAG00000039369	YBX3	100	88.410	ENSCAFG00020006412	YBX3	100	87.332	Canis_lupus_dingo
ENSMFAG00000039369	YBX3	100	81.395	ENSCHIG00000010863	YBX3	100	80.645	Capra_hircus
ENSMFAG00000039369	YBX3	77	94.425	ENSTSYG00000004204	-	88	94.425	Carlito_syrichta
ENSMFAG00000039369	YBX3	100	74.917	ENSTSYG00000035821	-	97	79.464	Carlito_syrichta
ENSMFAG00000039369	YBX3	77	86.411	ENSCAPG00000015039	YBX3	93	86.411	Cavia_aperea
ENSMFAG00000039369	YBX3	79	87.372	ENSCPOG00000011329	YBX3	86	87.372	Cavia_porcellus
ENSMFAG00000039369	YBX3	100	96.237	ENSCCAG00000016469	YBX3	100	96.237	Cebus_capucinus
ENSMFAG00000039369	YBX3	100	99.196	ENSCATG00000034411	YBX3	100	99.196	Cercocebus_atys
ENSMFAG00000039369	YBX3	77	86.760	ENSCLAG00000016030	YBX3	94	86.760	Chinchilla_lanigera
ENSMFAG00000039369	YBX3	100	99.196	ENSCSAG00000008744	YBX3	100	99.196	Chlorocebus_sabaeus
ENSMFAG00000039369	YBX3	94	83.237	ENSCHOG00000011988	YBX3	77	83.237	Choloepus_hoffmanni
ENSMFAG00000039369	YBX3	78	79.381	ENSCPBG00000014147	YBX3	74	87.500	Chrysemys_picta_bellii
ENSMFAG00000039369	YBX3	56	57.558	ENSCING00000010654	yb1/2/3	73	49.767	Ciona_intestinalis
ENSMFAG00000039369	YBX3	85	98.413	ENSCANG00000036801	YBX3	100	98.413	Colobus_angolensis_palliatus
ENSMFAG00000039369	YBX3	85	89.308	ENSCGRG00001016148	Ybx3	100	84.140	Cricetulus_griseus_chok1gshd
ENSMFAG00000039369	YBX3	77	90.411	ENSCGRG00000004563	Ybx3	98	89.041	Cricetulus_griseus_crigri
ENSMFAG00000039369	YBX3	90	80.882	ENSDORG00000009103	Ybx3	81	90.244	Dipodomys_ordii
ENSMFAG00000039369	YBX3	76	84.912	ENSETEG00000002557	YBX3	99	84.155	Echinops_telfairi
ENSMFAG00000039369	YBX3	100	87.228	ENSEASG00005014726	YBX3	97	91.379	Equus_asinus_asinus
ENSMFAG00000039369	YBX3	100	90.217	ENSECAG00000013777	YBX3	100	90.489	Equus_caballus
ENSMFAG00000039369	YBX3	76	91.549	ENSEEUG00000010415	YBX3	100	91.549	Erinaceus_europaeus
ENSMFAG00000039369	YBX3	100	91.711	ENSFCAG00000027748	YBX3	100	92.787	Felis_catus
ENSMFAG00000039369	YBX3	71	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSMFAG00000039369	YBX3	77	85.017	ENSFDAG00000021192	YBX3	92	83.972	Fukomys_damarensis
ENSMFAG00000039369	YBX3	91	72.727	ENSGALG00000031890	YBX3	70	97.849	Gallus_gallus
ENSMFAG00000039369	YBX3	78	79.381	ENSGAGG00000017780	YBX3	74	90.385	Gopherus_agassizii
ENSMFAG00000039369	YBX3	100	98.660	ENSGGOG00000001352	YBX3	100	98.660	Gorilla_gorilla
ENSMFAG00000039369	YBX3	74	78.909	ENSHGLG00000015495	-	88	71.096	Heterocephalus_glaber_female
ENSMFAG00000039369	YBX3	80	74.917	ENSHGLG00000014798	-	86	76.094	Heterocephalus_glaber_female
ENSMFAG00000039369	YBX3	72	88.073	ENSHGLG00100003589	YBX3	87	88.073	Heterocephalus_glaber_male
ENSMFAG00000039369	YBX3	77	86.063	ENSSTOG00000002108	-	88	86.063	Ictidomys_tridecemlineatus
ENSMFAG00000039369	YBX3	93	84.682	ENSSTOG00000032577	-	100	81.452	Ictidomys_tridecemlineatus
ENSMFAG00000039369	YBX3	79	68.013	ENSJJAG00000014239	Ybx3	96	85.227	Jaculus_jaculus
ENSMFAG00000039369	YBX3	100	91.129	ENSLAFG00000017247	YBX3	100	91.398	Loxodonta_africana
ENSMFAG00000039369	YBX3	87	100.000	ENSMMUG00000022469	YBX3	100	100.000	Macaca_mulatta
ENSMFAG00000039369	YBX3	100	99.194	ENSMNEG00000045109	YBX3	100	99.194	Macaca_nemestrina
ENSMFAG00000039369	YBX3	92	85.423	ENSMLEG00000033618	YBX3	79	98.955	Mandrillus_leucophaeus
ENSMFAG00000039369	YBX3	70	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSMFAG00000039369	YBX3	88	88.379	ENSMAUG00000012185	Ybx3	98	85.981	Mesocricetus_auratus
ENSMFAG00000039369	YBX3	100	73.927	ENSMICG00000031459	-	100	69.307	Microcebus_murinus
ENSMFAG00000039369	YBX3	100	90.323	ENSMICG00000038002	-	100	91.667	Microcebus_murinus
ENSMFAG00000039369	YBX3	84	89.068	ENSMOCG00000016291	Ybx3	96	90.847	Microtus_ochrogaster
ENSMFAG00000039369	YBX3	77	82.986	ENSMODG00000018248	YBX3	91	83.681	Monodelphis_domestica
ENSMFAG00000039369	YBX3	85	88.365	MGP_CAROLIEiJ_G0028947	Ybx3	100	83.602	Mus_caroli
ENSMFAG00000039369	YBX3	85	88.365	ENSMUSG00000030189	Ybx3	100	83.602	Mus_musculus
ENSMFAG00000039369	YBX3	85	88.994	MGP_PahariEiJ_G0022709	Ybx3	100	84.140	Mus_pahari
ENSMFAG00000039369	YBX3	85	88.679	MGP_SPRETEiJ_G0029994	Ybx3	100	83.871	Mus_spretus
ENSMFAG00000039369	YBX3	100	79.003	ENSMPUG00000011810	YBX3	100	78.478	Mustela_putorius_furo
ENSMFAG00000039369	YBX3	71	92.565	ENSMLUG00000007476	YBX3	100	90.706	Myotis_lucifugus
ENSMFAG00000039369	YBX3	79	85.522	ENSNGAG00000000710	Ybx3	91	82.895	Nannospalax_galili
ENSMFAG00000039369	YBX3	95	93.521	ENSNLEG00000034844	YBX3	100	93.521	Nomascus_leucogenys
ENSMFAG00000039369	YBX3	52	68.599	ENSMEUG00000002507	-	81	76.879	Notamacropus_eugenii
ENSMFAG00000039369	YBX3	82	80.592	ENSODEG00000017957	YBX3	94	80.997	Octodon_degus
ENSMFAG00000039369	YBX3	79	87.119	ENSOCUG00000001889	YBX3	85	86.780	Oryctolagus_cuniculus
ENSMFAG00000039369	YBX3	100	89.446	ENSOGAG00000013245	YBX3	100	89.182	Otolemur_garnettii
ENSMFAG00000039369	YBX3	69	98.980	ENSOARG00000020919	YBX3	99	82.155	Ovis_aries
ENSMFAG00000039369	YBX3	100	91.667	ENSPPAG00000039068	YBX3	100	91.667	Pan_paniscus
ENSMFAG00000039369	YBX3	100	91.711	ENSPPRG00000005859	YBX3	100	92.787	Panthera_pardus
ENSMFAG00000039369	YBX3	77	92.632	ENSPTIG00000005322	YBX3	81	91.986	Panthera_tigris_altaica
ENSMFAG00000039369	YBX3	100	98.396	ENSPTRG00000004681	YBX3	100	98.396	Pan_troglodytes
ENSMFAG00000039369	YBX3	100	99.462	ENSPANG00000010280	YBX3	100	99.462	Papio_anubis
ENSMFAG00000039369	YBX3	57	99.038	ENSPSIG00000009247	YBX3	95	100.000	Pelodiscus_sinensis
ENSMFAG00000039369	YBX3	82	88.306	ENSPEMG00000010391	-	85	90.708	Peromyscus_maniculatus_bairdii
ENSMFAG00000039369	YBX3	87	88.889	ENSPEMG00000012132	-	99	86.916	Peromyscus_maniculatus_bairdii
ENSMFAG00000039369	YBX3	70	81.154	ENSPCIG00000029949	YBX3	100	79.231	Phascolarctos_cinereus
ENSMFAG00000039369	YBX3	100	98.387	ENSPPYG00000004279	YBX3	100	98.387	Pongo_abelii
ENSMFAG00000039369	YBX3	80	100.000	ENSPCAG00000001397	YBX3	95	100.000	Procavia_capensis
ENSMFAG00000039369	YBX3	50	70.732	ENSPCOG00000011663	YBX3	100	87.109	Propithecus_coquereli
ENSMFAG00000039369	YBX3	100	78.667	ENSPVAG00000006740	YBX3	77	91.379	Pteropus_vampyrus
ENSMFAG00000039369	YBX3	85	89.623	ENSRNOG00000005480	Ybx3	100	84.409	Rattus_norvegicus
ENSMFAG00000039369	YBX3	100	98.118	ENSRBIG00000039208	YBX3	100	98.118	Rhinopithecus_bieti
ENSMFAG00000039369	YBX3	100	98.387	ENSRROG00000029638	YBX3	100	98.387	Rhinopithecus_roxellana
ENSMFAG00000039369	YBX3	92	87.172	ENSSBOG00000030573	YBX3	87	95.254	Saimiri_boliviensis_boliviensis
ENSMFAG00000039369	YBX3	65	98.837	ENSSHAG00000003262	YBX3	98	80.069	Sarcophilus_harrisii
ENSMFAG00000039369	YBX3	100	87.664	ENSSSCG00000000633	YBX3	100	89.501	Sus_scrofa
ENSMFAG00000039369	YBX3	70	98.077	ENSTGUG00000012047	YBX3	74	98.077	Taeniopygia_guttata
ENSMFAG00000039369	YBX3	100	86.022	ENSTBEG00000012570	YBX3	81	93.857	Tupaia_belangeri
ENSMFAG00000039369	YBX3	71	84.211	ENSTTRG00000008045	YBX3	100	84.211	Tursiops_truncatus
ENSMFAG00000039369	YBX3	75	87.770	ENSUAMG00000016662	YBX3	100	88.727	Ursus_americanus
ENSMFAG00000039369	YBX3	77	91.228	ENSUMAG00000016118	YBX3	94	91.289	Ursus_maritimus
ENSMFAG00000039369	YBX3	57	100.000	ENSVPAG00000000876	YBX3	100	71.831	Vicugna_pacos
ENSMFAG00000039369	YBX3	74	90.511	ENSVVUG00000004956	YBX3	100	90.876	Vulpes_vulpes
ENSMFAG00000039369	YBX3	53	92.222	ENSXETG00000016239	ybx3	90	64.602	Xenopus_tropicalis