EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMFAG00000045016 (Gene tree)
Gene ID: 101866227
Gene Symbol: UPF3A
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Macaca_fascicularis
Status: putative
Strand: Plus strand
Length: 25087 bases
Position: chr17:96784639-96809725
Accession: 101866227
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMFAP00000027235	Smg4_UPF3	PF03467.15	8.1e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMFAT00000001419	-	1374	XM_015439308	ENSMFAP00000027235	457 (aa)	XP_015294794	A0A2K5VQY1
ENSMFAT00000001426	-	777	-	ENSMFAP00000027242	258 (aa)	-	A0A2K5VR44

Gene Model

Click here to download ENSMFAG00000045016's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcf03013	RNA transport	KEGG
mcf03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMFAG00000045016's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMFAG00000045016	UPF3A	100	88.050	ENSG00000169062	UPF3A	100	88.050	Homo_sapiens
ENSMFAG00000045016	UPF3A	92	56.944	ENSAPOG00000013484	upf3a	91	57.176	Acanthochromis_polyacanthus
ENSMFAG00000045016	UPF3A	84	43.571	ENSAMEG00000000163	UPF3B	87	47.877	Ailuropoda_melanoleuca
ENSMFAG00000045016	UPF3A	93	68.615	ENSAMEG00000004259	UPF3A	99	69.365	Ailuropoda_melanoleuca
ENSMFAG00000045016	UPF3A	95	53.105	ENSACIG00000020468	upf3a	70	82.857	Amphilophus_citrinellus
ENSMFAG00000045016	UPF3A	95	56.054	ENSAOCG00000020784	upf3a	92	56.236	Amphiprion_ocellaris
ENSMFAG00000045016	UPF3A	95	56.054	ENSAPEG00000003519	upf3a	92	56.236	Amphiprion_percula
ENSMFAG00000045016	UPF3A	94	55.679	ENSATEG00000005843	upf3a	90	57.407	Anabas_testudineus
ENSMFAG00000045016	UPF3A	80	45.865	ENSACAG00000003625	UPF3B	84	50.868	Anolis_carolinensis
ENSMFAG00000045016	UPF3A	80	69.291	ENSACAG00000001540	UPF3A	92	69.291	Anolis_carolinensis
ENSMFAG00000045016	UPF3A	80	44.697	ENSANAG00000021894	-	73	69.620	Aotus_nancymaae
ENSMFAG00000045016	UPF3A	80	44.703	ENSANAG00000025598	-	66	70.968	Aotus_nancymaae
ENSMFAG00000045016	UPF3A	100	83.857	ENSANAG00000021713	UPF3A	100	83.891	Aotus_nancymaae
ENSMFAG00000045016	UPF3A	95	53.448	ENSACLG00000026274	upf3a	93	53.664	Astatotilapia_calliptera
ENSMFAG00000045016	UPF3A	96	54.267	ENSAMXG00000002608	upf3a	93	54.923	Astyanax_mexicanus
ENSMFAG00000045016	UPF3A	80	44.872	ENSCJAG00000004975	UPF3B	73	68.987	Callithrix_jacchus
ENSMFAG00000045016	UPF3A	100	84.486	ENSCJAG00000019102	UPF3A	100	83.437	Callithrix_jacchus
ENSMFAG00000045016	UPF3A	84	44.316	ENSCAFG00000018426	UPF3B	84	50.754	Canis_familiaris
ENSMFAG00000045016	UPF3A	98	68.936	ENSCAFG00000006504	UPF3A	100	68.936	Canis_familiaris
ENSMFAG00000045016	UPF3A	84	45.169	ENSCAFG00020004074	UPF3B	77	75.758	Canis_lupus_dingo
ENSMFAG00000045016	UPF3A	98	68.644	ENSCAFG00020014268	UPF3A	97	69.083	Canis_lupus_dingo
ENSMFAG00000045016	UPF3A	85	37.288	ENSCHIG00000011454	-	87	35.427	Capra_hircus
ENSMFAG00000045016	UPF3A	96	61.966	ENSCHIG00000008682	UPF3A	94	67.975	Capra_hircus
ENSMFAG00000045016	UPF3A	76	68.097	ENSTSYG00000001918	UPF3A	100	68.097	Carlito_syrichta
ENSMFAG00000045016	UPF3A	86	63.504	ENSCPOG00000006824	UPF3A	93	63.659	Cavia_porcellus
ENSMFAG00000045016	UPF3A	100	86.164	ENSCCAG00000018406	UPF3A	100	85.093	Cebus_capucinus
ENSMFAG00000045016	UPF3A	100	94.181	ENSCATG00000029733	UPF3A	100	94.181	Cercocebus_atys
ENSMFAG00000045016	UPF3A	100	92.291	ENSCSAG00000017388	UPF3A	100	91.121	Chlorocebus_sabaeus
ENSMFAG00000045016	UPF3A	61	93.333	ENSCHOG00000006918	-	59	67.785	Choloepus_hoffmanni
ENSMFAG00000045016	UPF3A	91	67.059	ENSCGRG00001017387	Upf3a	99	67.059	Cricetulus_griseus_chok1gshd
ENSMFAG00000045016	UPF3A	90	66.905	ENSCGRG00000001468	Upf3a	99	66.905	Cricetulus_griseus_crigri
ENSMFAG00000045016	UPF3A	93	56.849	ENSCSEG00000005106	upf3a	91	57.541	Cynoglossus_semilaevis
ENSMFAG00000045016	UPF3A	80	48.284	ENSCSEG00000002046	upf3b	86	48.931	Cynoglossus_semilaevis
ENSMFAG00000045016	UPF3A	85	57.250	ENSCVAG00000022333	upf3a	87	56.174	Cyprinodon_variegatus
ENSMFAG00000045016	UPF3A	99	51.660	ENSDARG00000069297	upf3a	99	52.282	Danio_rerio
ENSMFAG00000045016	UPF3A	88	69.655	ENSDNOG00000034391	UPF3A	98	69.248	Dasypus_novemcinctus
ENSMFAG00000045016	UPF3A	99	60.752	ENSETEG00000010110	UPF3A	99	61.042	Echinops_telfairi
ENSMFAG00000045016	UPF3A	100	67.683	ENSEASG00005021884	UPF3A	100	67.683	Equus_asinus_asinus
ENSMFAG00000045016	UPF3A	84	46.078	ENSEASG00005012919	UPF3B	78	72.581	Equus_asinus_asinus
ENSMFAG00000045016	UPF3A	100	67.886	ENSECAG00000017141	UPF3A	100	67.886	Equus_caballus
ENSMFAG00000045016	UPF3A	84	46.078	ENSECAG00000016947	UPF3B	78	63.492	Equus_caballus
ENSMFAG00000045016	UPF3A	99	54.262	ENSELUG00000011050	upf3a	99	53.958	Esox_lucius
ENSMFAG00000045016	UPF3A	99	71.042	ENSFCAG00000014602	UPF3A	99	71.042	Felis_catus
ENSMFAG00000045016	UPF3A	69	59.939	ENSGMOG00000019615	upf3a	50	79.755	Gadus_morhua
ENSMFAG00000045016	UPF3A	80	46.585	ENSGMOG00000001621	upf3b	88	47.653	Gadus_morhua
ENSMFAG00000045016	UPF3A	95	55.157	ENSGAFG00000021170	upf3a	88	56.974	Gambusia_affinis
ENSMFAG00000045016	UPF3A	79	43.655	ENSGACG00000017435	upf3b	87	42.260	Gasterosteus_aculeatus
ENSMFAG00000045016	UPF3A	69	60.494	ENSGACG00000001972	upf3a	100	59.701	Gasterosteus_aculeatus
ENSMFAG00000045016	UPF3A	80	42.569	ENSGAGG00000001219	UPF3B	85	50.623	Gopherus_agassizii
ENSMFAG00000045016	UPF3A	100	91.304	ENSGGOG00000015428	UPF3A	100	91.304	Gorilla_gorilla
ENSMFAG00000045016	UPF3A	90	82.725	ENSGGOG00000041219	-	97	79.854	Gorilla_gorilla
ENSMFAG00000045016	UPF3A	90	77.626	ENSGGOG00000043074	-	99	74.886	Gorilla_gorilla
ENSMFAG00000045016	UPF3A	95	55.605	ENSHBUG00000011325	upf3a	93	55.830	Haplochromis_burtoni
ENSMFAG00000045016	UPF3A	51	53.306	ENSHGLG00000011189	-	81	47.230	Heterocephalus_glaber_female
ENSMFAG00000045016	UPF3A	81	66.580	ENSHGLG00000001544	UPF3A	90	65.816	Heterocephalus_glaber_female
ENSMFAG00000045016	UPF3A	81	66.580	ENSHGLG00100013244	UPF3A	90	65.816	Heterocephalus_glaber_male
ENSMFAG00000045016	UPF3A	80	47.118	ENSHCOG00000017004	upf3b	86	46.585	Hippocampus_comes
ENSMFAG00000045016	UPF3A	50	63.158	ENSIPUG00000019249	upf3b	87	43.237	Ictalurus_punctatus
ENSMFAG00000045016	UPF3A	96	54.167	ENSIPUG00000023450	upf3a	93	55.011	Ictalurus_punctatus
ENSMFAG00000045016	UPF3A	80	46.154	ENSSTOG00000001101	UPF3B	82	50.125	Ictidomys_tridecemlineatus
ENSMFAG00000045016	UPF3A	93	55.505	ENSKMAG00000004381	upf3a	91	55.034	Kryptolebias_marmoratus
ENSMFAG00000045016	UPF3A	94	51.382	ENSLBEG00000021570	upf3a	91	52.315	Labrus_bergylta
ENSMFAG00000045016	UPF3A	99	56.118	ENSLOCG00000002665	upf3a	96	57.602	Lepisosteus_oculatus
ENSMFAG00000045016	UPF3A	85	58.837	ENSLAFG00000023358	UPF3A	99	57.477	Loxodonta_africana
ENSMFAG00000045016	UPF3A	85	44.104	ENSLAFG00000001267	UPF3B	82	49.750	Loxodonta_africana
ENSMFAG00000045016	UPF3A	100	93.926	ENSMMUG00000007449	UPF3A	100	93.926	Macaca_mulatta
ENSMFAG00000045016	UPF3A	99	88.260	ENSMNEG00000036402	UPF3A	100	88.260	Macaca_nemestrina
ENSMFAG00000045016	UPF3A	89	96.852	ENSMLEG00000014726	UPF3A	99	96.852	Mandrillus_leucophaeus
ENSMFAG00000045016	UPF3A	94	54.486	ENSMAMG00000018364	upf3a	93	54.705	Mastacembelus_armatus
ENSMFAG00000045016	UPF3A	95	53.448	ENSMZEG00005021571	upf3a	93	53.664	Maylandia_zebra
ENSMFAG00000045016	UPF3A	82	65.586	ENSMGAG00000014837	UPF3A	89	70.308	Meleagris_gallopavo
ENSMFAG00000045016	UPF3A	67	72.615	ENSMOCG00000000550	Upf3a	89	73.668	Microtus_ochrogaster
ENSMFAG00000045016	UPF3A	84	56.068	ENSMMOG00000019751	upf3a	85	56.311	Mola_mola
ENSMFAG00000045016	UPF3A	86	49.766	ENSMODG00000010232	UPF3B	97	51.168	Monodelphis_domestica
ENSMFAG00000045016	UPF3A	86	68.160	ENSMODG00000003159	UPF3A	99	68.160	Monodelphis_domestica
ENSMFAG00000045016	UPF3A	87	67.164	MGP_CAROLIEiJ_G0030848	Upf3a	99	67.458	Mus_caroli
ENSMFAG00000045016	UPF3A	87	66.502	ENSMUSG00000038398	Upf3a	99	66.824	Mus_musculus
ENSMFAG00000045016	UPF3A	87	66.749	MGP_PahariEiJ_G0021311	Upf3a	99	67.294	Mus_pahari
ENSMFAG00000045016	UPF3A	87	66.010	MGP_SPRETEiJ_G0031958	Upf3a	99	66.353	Mus_spretus
ENSMFAG00000045016	UPF3A	98	70.213	ENSMPUG00000009139	UPF3A	96	70.878	Mustela_putorius_furo
ENSMFAG00000045016	UPF3A	86	72.447	ENSMLUG00000015905	UPF3A	100	72.447	Myotis_lucifugus
ENSMFAG00000045016	UPF3A	91	68.000	ENSNGAG00000019314	Upf3a	99	68.000	Nannospalax_galili
ENSMFAG00000045016	UPF3A	95	55.381	ENSNBRG00000000828	upf3a	93	55.605	Neolamprologus_brichardi
ENSMFAG00000045016	UPF3A	100	91.540	ENSNLEG00000007563	UPF3A	100	91.540	Nomascus_leucogenys
ENSMFAG00000045016	UPF3A	50	68.670	ENSOPRG00000008846	-	56	71.250	Ochotona_princeps
ENSMFAG00000045016	UPF3A	95	55.234	ENSONIG00000006817	upf3a	92	55.405	Oreochromis_niloticus
ENSMFAG00000045016	UPF3A	76	62.295	ENSOANG00000006985	-	95	62.295	Ornithorhynchus_anatinus
ENSMFAG00000045016	UPF3A	98	59.355	ENSOCUG00000008450	UPF3A	99	59.660	Oryctolagus_cuniculus
ENSMFAG00000045016	UPF3A	82	58.673	ENSORLG00000010911	upf3a	88	55.869	Oryzias_latipes
ENSMFAG00000045016	UPF3A	90	55.107	ENSORLG00020014317	upf3a	88	55.344	Oryzias_latipes_hni
ENSMFAG00000045016	UPF3A	50	55.263	ENSORLG00020003758	upf3b	87	40.594	Oryzias_latipes_hni
ENSMFAG00000045016	UPF3A	81	59.269	ENSORLG00015017339	upf3a	51	56.635	Oryzias_latipes_hsok
ENSMFAG00000045016	UPF3A	81	58.793	ENSOMEG00000014425	upf3a	89	55.425	Oryzias_melastigma
ENSMFAG00000045016	UPF3A	87	70.096	ENSOGAG00000004788	UPF3A	99	70.096	Otolemur_garnettii
ENSMFAG00000045016	UPF3A	94	67.174	ENSOARG00000009004	UPF3A	96	67.174	Ovis_aries
ENSMFAG00000045016	UPF3A	83	42.785	ENSOARG00000007869	-	92	39.286	Ovis_aries
ENSMFAG00000045016	UPF3A	100	86.792	ENSPPAG00000042267	UPF3A	100	86.792	Pan_paniscus
ENSMFAG00000045016	UPF3A	99	70.625	ENSPPRG00000025062	UPF3A	99	70.625	Panthera_pardus
ENSMFAG00000045016	UPF3A	90	74.359	ENSPTRG00000051640	-	97	70.862	Pan_troglodytes
ENSMFAG00000045016	UPF3A	100	87.553	ENSPTRG00000006073	UPF3A	100	87.975	Pan_troglodytes
ENSMFAG00000045016	UPF3A	90	78.795	ENSPTRG00000041835	-	97	75.962	Pan_troglodytes
ENSMFAG00000045016	UPF3A	90	81.265	ENSPTRG00000041187	-	97	78.155	Pan_troglodytes
ENSMFAG00000045016	UPF3A	100	92.340	ENSPANG00000004346	UPF3A	100	93.133	Papio_anubis
ENSMFAG00000045016	UPF3A	81	48.750	ENSPKIG00000019226	upf3b	67	75.000	Paramormyrops_kingsleyae
ENSMFAG00000045016	UPF3A	99	51.411	ENSPKIG00000004422	upf3a	97	54.817	Paramormyrops_kingsleyae
ENSMFAG00000045016	UPF3A	86	68.613	ENSPSIG00000007468	UPF3A	100	68.613	Pelodiscus_sinensis
ENSMFAG00000045016	UPF3A	98	51.452	ENSPMGG00000012696	upf3a	95	52.058	Periophthalmus_magnuspinnatus
ENSMFAG00000045016	UPF3A	91	68.287	ENSPEMG00000019968	-	99	68.287	Peromyscus_maniculatus_bairdii
ENSMFAG00000045016	UPF3A	80	43.069	ENSPEMG00000012352	Upf3b	82	50.248	Peromyscus_maniculatus_bairdii
ENSMFAG00000045016	UPF3A	80	74.561	ENSPCIG00000019590	-	100	69.804	Phascolarctos_cinereus
ENSMFAG00000045016	UPF3A	80	47.583	ENSPCIG00000028914	UPF3B	92	44.091	Phascolarctos_cinereus
ENSMFAG00000045016	UPF3A	95	56.180	ENSPFOG00000013222	upf3a	88	58.057	Poecilia_formosa
ENSMFAG00000045016	UPF3A	95	54.933	ENSPLAG00000011960	upf3a	89	56.872	Poecilia_latipinna
ENSMFAG00000045016	UPF3A	95	53.548	ENSPMEG00000000836	upf3a	89	55.329	Poecilia_mexicana
ENSMFAG00000045016	UPF3A	100	88.050	ENSPPYG00000005536	UPF3A	100	88.050	Pongo_abelii
ENSMFAG00000045016	UPF3A	69	64.412	ENSPCAG00000013124	UPF3A	70	64.412	Procavia_capensis
ENSMFAG00000045016	UPF3A	100	65.281	ENSPVAG00000005656	UPF3A	100	65.281	Pteropus_vampyrus
ENSMFAG00000045016	UPF3A	95	53.448	ENSPNYG00000011289	upf3a	93	53.664	Pundamilia_nyererei
ENSMFAG00000045016	UPF3A	96	54.148	ENSPNAG00000019532	upf3a	93	55.022	Pygocentrus_nattereri
ENSMFAG00000045016	UPF3A	86	67.079	ENSRNOG00000017397	Upf3a	97	67.750	Rattus_norvegicus
ENSMFAG00000045016	UPF3A	85	96.701	ENSRBIG00000034007	UPF3A	96	92.363	Rhinopithecus_bieti
ENSMFAG00000045016	UPF3A	85	96.701	ENSRROG00000012212	UPF3A	85	96.701	Rhinopithecus_roxellana
ENSMFAG00000045016	UPF3A	80	45.128	ENSSBOG00000019740	UPF3B	74	70.513	Saimiri_boliviensis_boliviensis
ENSMFAG00000045016	UPF3A	100	78.692	ENSSBOG00000029989	UPF3A	100	79.325	Saimiri_boliviensis_boliviensis
ENSMFAG00000045016	UPF3A	86	69.830	ENSSHAG00000009895	UPF3A	98	69.830	Sarcophilus_harrisii
ENSMFAG00000045016	UPF3A	80	49.246	ENSSHAG00000008634	UPF3B	89	51.270	Sarcophilus_harrisii
ENSMFAG00000045016	UPF3A	85	59.542	ENSSFOG00015021851	upf3a	87	59.542	Scleropages_formosus
ENSMFAG00000045016	UPF3A	51	58.848	ENSSFOG00015005614	upf3b	87	50.750	Scleropages_formosus
ENSMFAG00000045016	UPF3A	50	64.474	ENSSMAG00000012913	upf3b	86	43.842	Scophthalmus_maximus
ENSMFAG00000045016	UPF3A	80	54.634	ENSSMAG00000003858	upf3a	95	58.140	Scophthalmus_maximus
ENSMFAG00000045016	UPF3A	94	53.392	ENSSDUG00000009680	upf3a	91	54.241	Seriola_dumerili
ENSMFAG00000045016	UPF3A	94	55.329	ENSSLDG00000009700	upf3a	90	56.250	Seriola_lalandi_dorsalis
ENSMFAG00000045016	UPF3A	84	61.347	ENSSARG00000007262	UPF3A	97	59.850	Sorex_araneus
ENSMFAG00000045016	UPF3A	80	45.038	ENSSPUG00000013082	UPF3B	82	45.038	Sphenodon_punctatus
ENSMFAG00000045016	UPF3A	100	68.916	ENSSSCG00000024679	UPF3A	97	69.278	Sus_scrofa
ENSMFAG00000045016	UPF3A	84	44.418	ENSTGUG00000003413	UPF3B	95	49.880	Taeniopygia_guttata
ENSMFAG00000045016	UPF3A	80	70.419	ENSTGUG00000009493	UPF3A	97	70.419	Taeniopygia_guttata
ENSMFAG00000045016	UPF3A	96	53.761	ENSTRUG00000012730	upf3a	94	53.982	Takifugu_rubripes
ENSMFAG00000045016	UPF3A	81	47.407	ENSTRUG00000010645	upf3b	91	46.851	Takifugu_rubripes
ENSMFAG00000045016	UPF3A	80	51.872	ENSTNIG00000014973	upf3a	96	50.781	Tetraodon_nigroviridis
ENSMFAG00000045016	UPF3A	68	60.790	ENSTBEG00000017186	-	100	53.495	Tupaia_belangeri
ENSMFAG00000045016	UPF3A	100	59.836	ENSTTRG00000015414	UPF3A	100	59.836	Tursiops_truncatus
ENSMFAG00000045016	UPF3A	84	43.765	ENSUAMG00000024565	UPF3B	77	70.968	Ursus_americanus
ENSMFAG00000045016	UPF3A	84	42.892	ENSUMAG00000002150	UPF3B	88	42.686	Ursus_maritimus
ENSMFAG00000045016	UPF3A	85	71.638	ENSVPAG00000003525	UPF3A	100	71.638	Vicugna_pacos
ENSMFAG00000045016	UPF3A	98	67.666	ENSVVUG00000013538	UPF3A	94	67.880	Vulpes_vulpes
ENSMFAG00000045016	UPF3A	84	44.471	ENSVVUG00000011594	UPF3B	77	75.758	Vulpes_vulpes
ENSMFAG00000045016	UPF3A	80	45.685	ENSXETG00000007440	upf3b	68	70.701	Xenopus_tropicalis
ENSMFAG00000045016	UPF3A	80	58.824	ENSXETG00000002572	upf3a	88	57.754	Xenopus_tropicalis
ENSMFAG00000045016	UPF3A	81	41.481	ENSXMAG00000013680	upf3b	87	44.363	Xiphophorus_maculatus
ENSMFAG00000045016	UPF3A	95	55.381	ENSXMAG00000013452	upf3a	88	57.210	Xiphophorus_maculatus