EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMGAG00000004745 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Meleagris_gallopavo
Status: putative
Strand: Minus strand
Length: 15722 bases
Position: chr30:3118826-3134547
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMGAP00000004600	UPF1_Zn_bind	PF09416.10	3.2e-75	1	1
ENSMGAP00000004600	ResIII	PF04851.15	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMGAT00000005320	UPF1-201	3220	-	ENSMGAP00000004600	1052 (aa)	-	G1MZU2

Gene Model

Click here to download ENSMGAG00000004745's gene model file

Pathways

Pathway ID	Pathway Name	Source
mgp03013	RNA transport	KEGG
mgp03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMGAG00000004745's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMGAG00000004745	UPF1	100	97.719	ENSG00000005007	UPF1	93	97.719	Homo_sapiens
ENSMGAG00000004745	UPF1	100	93.548	ENSAPOG00000010916	-	95	93.643	Acanthochromis_polyacanthus
ENSMGAG00000004745	UPF1	100	92.242	ENSAPOG00000023773	upf1	95	92.431	Acanthochromis_polyacanthus
ENSMGAG00000004745	UPF1	100	97.909	ENSAMEG00000011474	UPF1	93	97.909	Ailuropoda_melanoleuca
ENSMGAG00000004745	UPF1	99	93.539	ENSACIG00000010985	-	100	93.635	Amphilophus_citrinellus
ENSMGAG00000004745	UPF1	100	92.395	ENSACIG00000019949	upf1	95	92.431	Amphilophus_citrinellus
ENSMGAG00000004745	UPF1	100	91.730	ENSAOCG00000018519	upf1	95	92.416	Amphiprion_ocellaris
ENSMGAG00000004745	UPF1	100	93.454	ENSAOCG00000006352	-	100	91.049	Amphiprion_ocellaris
ENSMGAG00000004745	UPF1	100	93.454	ENSAPEG00000006292	-	100	91.049	Amphiprion_percula
ENSMGAG00000004745	UPF1	100	91.730	ENSAPEG00000016344	upf1	95	92.416	Amphiprion_percula
ENSMGAG00000004745	UPF1	100	93.643	ENSATEG00000016606	-	95	93.738	Anabas_testudineus
ENSMGAG00000004745	UPF1	100	91.028	ENSATEG00000017867	upf1	95	91.963	Anabas_testudineus
ENSMGAG00000004745	UPF1	100	98.859	ENSAPLG00000009175	UPF1	99	98.859	Anas_platyrhynchos
ENSMGAG00000004745	UPF1	100	96.388	ENSANAG00000024107	UPF1	95	96.388	Aotus_nancymaae
ENSMGAG00000004745	UPF1	100	92.205	ENSACLG00000007181	upf1	95	92.242	Astatotilapia_calliptera
ENSMGAG00000004745	UPF1	100	93.352	ENSACLG00000022630	-	95	93.352	Astatotilapia_calliptera
ENSMGAG00000004745	UPF1	100	94.213	ENSAMXG00000042187	upf1	95	94.782	Astyanax_mexicanus
ENSMGAG00000004745	UPF1	100	97.909	ENSBTAG00000020922	UPF1	93	97.909	Bos_taurus
ENSMGAG00000004745	UPF1	85	53.224	WBGene00004880	smg-2	90	50.439	Caenorhabditis_elegans
ENSMGAG00000004745	UPF1	100	97.719	ENSCJAG00000019627	UPF1	93	97.719	Callithrix_jacchus
ENSMGAG00000004745	UPF1	100	97.909	ENSCAFG00000014578	UPF1	93	97.909	Canis_familiaris
ENSMGAG00000004745	UPF1	100	97.624	ENSCAFG00020012347	UPF1	93	97.624	Canis_lupus_dingo
ENSMGAG00000004745	UPF1	100	97.909	ENSCHIG00000011018	UPF1	93	97.909	Capra_hircus
ENSMGAG00000004745	UPF1	100	97.529	ENSTSYG00000008877	UPF1	98	97.529	Carlito_syrichta
ENSMGAG00000004745	UPF1	100	97.148	ENSCAPG00000005758	UPF1	95	97.148	Cavia_aperea
ENSMGAG00000004745	UPF1	99	97.235	ENSCPOG00000025463	UPF1	94	97.235	Cavia_porcellus
ENSMGAG00000004745	UPF1	100	97.719	ENSCCAG00000032175	UPF1	94	97.719	Cebus_capucinus
ENSMGAG00000004745	UPF1	100	97.624	ENSCATG00000040306	UPF1	98	97.624	Cercocebus_atys
ENSMGAG00000004745	UPF1	100	97.719	ENSCLAG00000004037	UPF1	99	97.719	Chinchilla_lanigera
ENSMGAG00000004745	UPF1	100	97.433	ENSCSAG00000005276	UPF1	93	97.433	Chlorocebus_sabaeus
ENSMGAG00000004745	UPF1	100	97.820	ENSCPBG00000012513	UPF1	94	97.820	Chrysemys_picta_bellii
ENSMGAG00000004745	UPF1	74	81.877	ENSCING00000021399	-	91	81.877	Ciona_intestinalis
ENSMGAG00000004745	UPF1	99	72.873	ENSCSAVG00000006533	-	94	73.157	Ciona_savignyi
ENSMGAG00000004745	UPF1	100	97.719	ENSCANG00000029819	UPF1	97	97.719	Colobus_angolensis_palliatus
ENSMGAG00000004745	UPF1	100	96.863	ENSCGRG00001021067	Upf1	93	96.863	Cricetulus_griseus_chok1gshd
ENSMGAG00000004745	UPF1	100	97.148	ENSCGRG00000013480	Upf1	98	97.148	Cricetulus_griseus_crigri
ENSMGAG00000004745	UPF1	100	93.637	ENSCSEG00000016159	-	95	93.637	Cynoglossus_semilaevis
ENSMGAG00000004745	UPF1	100	86.907	ENSCSEG00000017239	upf1	94	87.048	Cynoglossus_semilaevis
ENSMGAG00000004745	UPF1	100	93.264	ENSCVAG00000010561	upf1	95	93.264	Cyprinodon_variegatus
ENSMGAG00000004745	UPF1	100	94.118	ENSDARG00000016302	upf1	95	94.687	Danio_rerio
ENSMGAG00000004745	UPF1	100	94.682	ENSDORG00000009984	Upf1	95	94.682	Dipodomys_ordii
ENSMGAG00000004745	UPF1	83	73.839	FBgn0030354	Upf1	78	70.464	Drosophila_melanogaster
ENSMGAG00000004745	UPF1	52	88.727	ENSEBUG00000010069	upf1	89	88.727	Eptatretus_burgeri
ENSMGAG00000004745	UPF1	100	97.529	ENSEASG00005006549	UPF1	93	97.529	Equus_asinus_asinus
ENSMGAG00000004745	UPF1	100	97.529	ENSECAG00000010639	UPF1	93	97.529	Equus_caballus
ENSMGAG00000004745	UPF1	100	92.925	ENSELUG00000012916	-	95	92.931	Esox_lucius
ENSMGAG00000004745	UPF1	100	91.313	ENSELUG00000020917	upf1	95	91.596	Esox_lucius
ENSMGAG00000004745	UPF1	100	98.004	ENSFCAG00000009757	UPF1	93	98.004	Felis_catus
ENSMGAG00000004745	UPF1	100	97.822	ENSFALG00000009312	UPF1	96	97.822	Ficedula_albicollis
ENSMGAG00000004745	UPF1	100	97.624	ENSFDAG00000014816	UPF1	99	97.624	Fukomys_damarensis
ENSMGAG00000004745	UPF1	100	89.642	ENSFHEG00000006428	upf1	94	89.642	Fundulus_heteroclitus
ENSMGAG00000004745	UPF1	91	93.116	ENSFHEG00000016276	-	96	93.297	Fundulus_heteroclitus
ENSMGAG00000004745	UPF1	100	93.264	ENSGMOG00000007541	upf1	95	93.833	Gadus_morhua
ENSMGAG00000004745	UPF1	100	98.479	ENSGALG00000003220	UPF1	93	98.479	Gallus_gallus
ENSMGAG00000004745	UPF1	67	93.343	ENSGAFG00000015443	-	85	93.343	Gambusia_affinis
ENSMGAG00000004745	UPF1	100	93.067	ENSGAFG00000004831	upf1	95	93.067	Gambusia_affinis
ENSMGAG00000004745	UPF1	100	98.194	ENSGAGG00000022217	UPF1	94	98.194	Gopherus_agassizii
ENSMGAG00000004745	UPF1	100	97.433	ENSGGOG00000002608	UPF1	99	97.433	Gorilla_gorilla
ENSMGAG00000004745	UPF1	86	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSMGAG00000004745	UPF1	86	87.356	ENSHBUG00000014694	upf1	90	87.356	Haplochromis_burtoni
ENSMGAG00000004745	UPF1	100	97.433	ENSHGLG00000010900	UPF1	93	97.433	Heterocephalus_glaber_female
ENSMGAG00000004745	UPF1	100	95.722	ENSHGLG00100005904	UPF1	96	95.722	Heterocephalus_glaber_male
ENSMGAG00000004745	UPF1	100	92.403	ENSHCOG00000008918	upf1	100	92.543	Hippocampus_comes
ENSMGAG00000004745	UPF1	100	94.402	ENSIPUG00000005108	UPF1	95	94.877	Ictalurus_punctatus
ENSMGAG00000004745	UPF1	100	97.719	ENSSTOG00000009196	UPF1	94	97.719	Ictidomys_tridecemlineatus
ENSMGAG00000004745	UPF1	100	96.768	ENSJJAG00000023151	Upf1	94	96.768	Jaculus_jaculus
ENSMGAG00000004745	UPF1	100	93.454	ENSKMAG00000004962	upf1	95	93.454	Kryptolebias_marmoratus
ENSMGAG00000004745	UPF1	100	90.449	ENSLBEG00000014862	upf1	95	91.760	Labrus_bergylta
ENSMGAG00000004745	UPF1	100	93.359	ENSLBEG00000027848	-	95	93.454	Labrus_bergylta
ENSMGAG00000004745	UPF1	66	97.135	ENSLACG00000008482	UPF1	100	97.135	Latimeria_chalumnae
ENSMGAG00000004745	UPF1	100	96.296	ENSLOCG00000002072	upf1	95	96.296	Lepisosteus_oculatus
ENSMGAG00000004745	UPF1	100	97.338	ENSLAFG00000014963	UPF1	93	97.338	Loxodonta_africana
ENSMGAG00000004745	UPF1	100	97.719	ENSMFAG00000037748	UPF1	94	97.719	Macaca_fascicularis
ENSMGAG00000004745	UPF1	100	97.719	ENSMMUG00000023286	UPF1	94	97.719	Macaca_mulatta
ENSMGAG00000004745	UPF1	100	97.719	ENSMNEG00000000046	UPF1	94	97.719	Macaca_nemestrina
ENSMGAG00000004745	UPF1	100	97.719	ENSMLEG00000028404	UPF1	99	97.719	Mandrillus_leucophaeus
ENSMGAG00000004745	UPF1	100	92.789	ENSMAMG00000006231	-	95	93.359	Mastacembelus_armatus
ENSMGAG00000004745	UPF1	100	90.748	ENSMAMG00000006229	upf1	95	91.869	Mastacembelus_armatus
ENSMGAG00000004745	UPF1	100	93.352	ENSMZEG00005016386	-	95	93.352	Maylandia_zebra
ENSMGAG00000004745	UPF1	100	90.663	ENSMZEG00005003489	upf1	95	92.019	Maylandia_zebra
ENSMGAG00000004745	UPF1	100	97.148	ENSMAUG00000011398	Upf1	95	97.148	Mesocricetus_auratus
ENSMGAG00000004745	UPF1	100	97.338	ENSMICG00000001659	UPF1	93	97.338	Microcebus_murinus
ENSMGAG00000004745	UPF1	100	97.148	ENSMOCG00000005699	Upf1	94	97.148	Microtus_ochrogaster
ENSMGAG00000004745	UPF1	99	91.810	ENSMMOG00000007881	upf1	94	92.293	Mola_mola
ENSMGAG00000004745	UPF1	100	91.271	ENSMMOG00000007537	-	99	91.366	Mola_mola
ENSMGAG00000004745	UPF1	100	98.479	ENSMODG00000003689	UPF1	95	98.194	Monodelphis_domestica
ENSMGAG00000004745	UPF1	100	92.060	ENSMALG00000018100	-	95	92.155	Monopterus_albus
ENSMGAG00000004745	UPF1	100	91.825	ENSMALG00000000144	upf1	95	92.205	Monopterus_albus
ENSMGAG00000004745	UPF1	100	97.053	MGP_CAROLIEiJ_G0031142	Upf1	94	97.053	Mus_caroli
ENSMGAG00000004745	UPF1	100	97.053	ENSMUSG00000058301	Upf1	94	97.053	Mus_musculus
ENSMGAG00000004745	UPF1	100	97.053	MGP_PahariEiJ_G0021607	Upf1	94	97.053	Mus_pahari
ENSMGAG00000004745	UPF1	100	97.053	MGP_SPRETEiJ_G0032260	Upf1	94	97.053	Mus_spretus
ENSMGAG00000004745	UPF1	100	97.624	ENSMPUG00000015516	UPF1	93	97.624	Mustela_putorius_furo
ENSMGAG00000004745	UPF1	100	97.433	ENSMLUG00000012122	UPF1	93	97.433	Myotis_lucifugus
ENSMGAG00000004745	UPF1	100	97.053	ENSNGAG00000024107	Upf1	93	97.053	Nannospalax_galili
ENSMGAG00000004745	UPF1	100	90.399	ENSNBRG00000000670	upf1	95	90.445	Neolamprologus_brichardi
ENSMGAG00000004745	UPF1	99	92.507	ENSNBRG00000022069	-	100	92.507	Neolamprologus_brichardi
ENSMGAG00000004745	UPF1	100	91.920	ENSNLEG00000006062	UPF1	99	91.920	Nomascus_leucogenys
ENSMGAG00000004745	UPF1	82	94.521	ENSMEUG00000014146	-	76	94.521	Notamacropus_eugenii
ENSMGAG00000004745	UPF1	100	89.639	ENSOPRG00000014018	UPF1	99	89.639	Ochotona_princeps
ENSMGAG00000004745	UPF1	100	97.624	ENSODEG00000012426	UPF1	95	97.624	Octodon_degus
ENSMGAG00000004745	UPF1	100	93.447	ENSONIG00000012729	-	95	93.447	Oreochromis_niloticus
ENSMGAG00000004745	UPF1	100	90.943	ENSONIG00000010452	upf1	95	92.300	Oreochromis_niloticus
ENSMGAG00000004745	UPF1	100	97.438	ENSOANG00000004568	UPF1	93	97.438	Ornithorhynchus_anatinus
ENSMGAG00000004745	UPF1	100	93.169	ENSORLG00000008453	upf1	95	93.169	Oryzias_latipes
ENSMGAG00000004745	UPF1	100	93.169	ENSORLG00020014758	upf1	95	93.169	Oryzias_latipes_hni
ENSMGAG00000004745	UPF1	100	93.169	ENSORLG00015010165	upf1	100	89.317	Oryzias_latipes_hsok
ENSMGAG00000004745	UPF1	100	93.169	ENSOMEG00000003665	upf1	95	93.169	Oryzias_melastigma
ENSMGAG00000004745	UPF1	100	97.529	ENSOGAG00000012866	UPF1	93	97.529	Otolemur_garnettii
ENSMGAG00000004745	UPF1	96	97.438	ENSOARG00000010739	UPF1	93	97.438	Ovis_aries
ENSMGAG00000004745	UPF1	100	97.719	ENSPPAG00000043884	UPF1	96	97.719	Pan_paniscus
ENSMGAG00000004745	UPF1	100	98.004	ENSPPRG00000023470	UPF1	93	98.004	Panthera_pardus
ENSMGAG00000004745	UPF1	100	95.627	ENSPTIG00000010159	UPF1	99	95.627	Panthera_tigris_altaica
ENSMGAG00000004745	UPF1	100	97.719	ENSPTRG00000010721	UPF1	94	97.719	Pan_troglodytes
ENSMGAG00000004745	UPF1	100	97.719	ENSPANG00000008847	UPF1	94	97.719	Papio_anubis
ENSMGAG00000004745	UPF1	90	95.925	ENSPKIG00000006069	upf1	91	95.925	Paramormyrops_kingsleyae
ENSMGAG00000004745	UPF1	73	98.303	ENSPSIG00000009491	UPF1	100	98.303	Pelodiscus_sinensis
ENSMGAG00000004745	UPF1	99	90.152	ENSPMGG00000017327	upf1	95	90.265	Periophthalmus_magnuspinnatus
ENSMGAG00000004745	UPF1	100	97.148	ENSPEMG00000001085	Upf1	94	97.148	Peromyscus_maniculatus_bairdii
ENSMGAG00000004745	UPF1	100	88.604	ENSPMAG00000001206	upf1	94	88.604	Petromyzon_marinus
ENSMGAG00000004745	UPF1	100	98.194	ENSPCIG00000006156	UPF1	93	98.194	Phascolarctos_cinereus
ENSMGAG00000004745	UPF1	100	93.162	ENSPLAG00000016232	-	95	93.162	Poecilia_latipinna
ENSMGAG00000004745	UPF1	100	90.687	ENSPLAG00000018155	-	95	90.687	Poecilia_latipinna
ENSMGAG00000004745	UPF1	100	93.257	ENSPMEG00000016319	-	95	93.257	Poecilia_mexicana
ENSMGAG00000004745	UPF1	100	91.090	ENSPMEG00000011443	-	95	91.090	Poecilia_mexicana
ENSMGAG00000004745	UPF1	100	91.063	ENSPREG00000009940	upf1	94	91.063	Poecilia_reticulata
ENSMGAG00000004745	UPF1	100	92.972	ENSPREG00000011247	-	95	92.972	Poecilia_reticulata
ENSMGAG00000004745	UPF1	100	92.395	ENSPPYG00000009752	UPF1	93	92.395	Pongo_abelii
ENSMGAG00000004745	UPF1	70	98.322	ENSPCAG00000012962	UPF1	65	98.322	Procavia_capensis
ENSMGAG00000004745	UPF1	100	97.814	ENSPCOG00000023813	UPF1	94	97.814	Propithecus_coquereli
ENSMGAG00000004745	UPF1	67	100.000	ENSPVAG00000003183	UPF1	61	100.000	Pteropus_vampyrus
ENSMGAG00000004745	UPF1	100	90.663	ENSPNYG00000003694	upf1	95	92.019	Pundamilia_nyererei
ENSMGAG00000004745	UPF1	100	93.447	ENSPNYG00000016731	-	95	93.447	Pundamilia_nyererei
ENSMGAG00000004745	UPF1	100	94.213	ENSPNAG00000025614	upf1	95	94.782	Pygocentrus_nattereri
ENSMGAG00000004745	UPF1	100	97.053	ENSRNOG00000020134	Upf1	94	97.053	Rattus_norvegicus
ENSMGAG00000004745	UPF1	100	95.342	ENSRBIG00000013894	UPF1	98	97.189	Rhinopithecus_bieti
ENSMGAG00000004745	UPF1	100	97.719	ENSRROG00000040935	UPF1	98	97.189	Rhinopithecus_roxellana
ENSMGAG00000004745	UPF1	80	54.715	YMR080C	NAM7	87	54.715	Saccharomyces_cerevisiae
ENSMGAG00000004745	UPF1	99	97.716	ENSSBOG00000023632	UPF1	96	97.716	Saimiri_boliviensis_boliviensis
ENSMGAG00000004745	UPF1	100	98.197	ENSSHAG00000010499	UPF1	100	98.197	Sarcophilus_harrisii
ENSMGAG00000004745	UPF1	100	96.296	ENSSFOG00015021095	upf1	99	96.201	Scleropages_formosus
ENSMGAG00000004745	UPF1	100	89.981	ENSSMAG00000005055	upf1	95	91.020	Scophthalmus_maximus
ENSMGAG00000004745	UPF1	100	93.454	ENSSMAG00000021018	-	95	93.548	Scophthalmus_maximus
ENSMGAG00000004745	UPF1	100	93.833	ENSSDUG00000009629	-	95	93.928	Seriola_dumerili
ENSMGAG00000004745	UPF1	100	90.935	ENSSDUG00000013320	upf1	95	92.056	Seriola_dumerili
ENSMGAG00000004745	UPF1	100	93.833	ENSSLDG00000006878	-	95	93.928	Seriola_lalandi_dorsalis
ENSMGAG00000004745	UPF1	100	91.792	ENSSLDG00000020868	upf1	95	92.373	Seriola_lalandi_dorsalis
ENSMGAG00000004745	UPF1	100	98.099	ENSSPUG00000010538	UPF1	94	98.099	Sphenodon_punctatus
ENSMGAG00000004745	UPF1	100	93.447	ENSSPAG00000011521	-	95	93.447	Stegastes_partitus
ENSMGAG00000004745	UPF1	100	90.028	ENSSPAG00000000003	upf1	95	90.057	Stegastes_partitus
ENSMGAG00000004745	UPF1	100	97.814	ENSSSCG00000039301	UPF1	99	97.529	Sus_scrofa
ENSMGAG00000004745	UPF1	82	91.773	ENSTGUG00000001057	UPF1	89	98.331	Taeniopygia_guttata
ENSMGAG00000004745	UPF1	100	91.825	ENSTRUG00000000150	upf1	95	91.825	Takifugu_rubripes
ENSMGAG00000004745	UPF1	100	92.498	ENSTRUG00000005131	-	95	92.593	Takifugu_rubripes
ENSMGAG00000004745	UPF1	100	93.536	ENSTTRG00000011544	UPF1	93	93.536	Tursiops_truncatus
ENSMGAG00000004745	UPF1	100	97.624	ENSUAMG00000007093	UPF1	93	97.624	Ursus_americanus
ENSMGAG00000004745	UPF1	100	97.909	ENSUMAG00000006652	UPF1	99	97.643	Ursus_maritimus
ENSMGAG00000004745	UPF1	100	97.624	ENSVVUG00000007797	UPF1	93	97.624	Vulpes_vulpes
ENSMGAG00000004745	UPF1	100	83.617	ENSXETG00000013602	upf1	93	83.617	Xenopus_tropicalis
ENSMGAG00000004745	UPF1	96	90.748	ENSXCOG00000015275	-	91	90.748	Xiphophorus_couchianus
ENSMGAG00000004745	UPF1	99	93.289	ENSXCOG00000005764	-	100	93.289	Xiphophorus_couchianus
ENSMGAG00000004745	UPF1	100	93.067	ENSXMAG00000002540	-	95	93.067	Xiphophorus_maculatus
ENSMGAG00000004745	UPF1	100	90.978	ENSXMAG00000001703	-	95	90.978	Xiphophorus_maculatus