EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMGAG00000006333 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Meleagris_gallopavo
Status: putative
Strand: Minus strand
Length: 30168 bases
Position: chr11:10184514-10214681
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMGAP00000006379	XRN_N	PF03159.18	6.5e-69	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMGAT00000007129	XRN1-201	5130	-	ENSMGAP00000006379	1709 (aa)	-	G1N3Q8

Gene Model

Click here to download ENSMGAG00000006333's gene model file

Pathways

Pathway ID	Pathway Name	Source
mgp03008	Ribosome biogenesis in eukaryotes	KEGG
mgp03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMGAG00000006333's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMGAG00000006333	XRN1	100	74.826	ENSG00000114127	XRN1	94	83.295	Homo_sapiens
ENSMGAG00000006333	XRN1	93	71.334	ENSAPOG00000000622	xrn1	97	71.417	Acanthochromis_polyacanthus
ENSMGAG00000006333	XRN1	100	75.420	ENSAMEG00000012538	XRN1	99	75.884	Ailuropoda_melanoleuca
ENSMGAG00000006333	XRN1	93	71.228	ENSACIG00000001057	xrn1	97	71.370	Amphilophus_citrinellus
ENSMGAG00000006333	XRN1	94	69.548	ENSAOCG00000014097	xrn1	97	69.628	Amphiprion_ocellaris
ENSMGAG00000006333	XRN1	100	59.773	ENSAPEG00000006620	xrn1	91	71.033	Amphiprion_percula
ENSMGAG00000006333	XRN1	99	67.051	ENSATEG00000009752	xrn1	99	67.075	Anabas_testudineus
ENSMGAG00000006333	XRN1	99	91.662	ENSAPLG00000004905	XRN1	100	91.720	Anas_platyrhynchos
ENSMGAG00000006333	XRN1	100	75.569	ENSACAG00000004985	XRN1	99	75.569	Anolis_carolinensis
ENSMGAG00000006333	XRN1	100	74.767	ENSANAG00000029013	XRN1	97	84.234	Aotus_nancymaae
ENSMGAG00000006333	XRN1	100	59.525	ENSACLG00000004806	xrn1	99	59.774	Astatotilapia_calliptera
ENSMGAG00000006333	XRN1	99	60.198	ENSAMXG00000019370	xrn1	74	95.000	Astyanax_mexicanus
ENSMGAG00000006333	XRN1	100	73.456	ENSBTAG00000011524	XRN1	99	73.860	Bos_taurus
ENSMGAG00000006333	XRN1	68	36.883	WBGene00012730	xrn-1	79	37.297	Caenorhabditis_elegans
ENSMGAG00000006333	XRN1	100	74.421	ENSCJAG00000001872	XRN1	98	75.983	Callithrix_jacchus
ENSMGAG00000006333	XRN1	100	75.610	ENSCAFG00000007783	XRN1	99	76.016	Canis_familiaris
ENSMGAG00000006333	XRN1	100	75.668	ENSCAFG00020009120	XRN1	97	82.286	Canis_lupus_dingo
ENSMGAG00000006333	XRN1	99	74.985	ENSCHIG00000019192	XRN1	99	75.393	Capra_hircus
ENSMGAG00000006333	XRN1	100	74.884	ENSTSYG00000002705	XRN1	99	74.942	Carlito_syrichta
ENSMGAG00000006333	XRN1	100	74.884	ENSCCAG00000034800	XRN1	97	84.983	Cebus_capucinus
ENSMGAG00000006333	XRN1	100	75.116	ENSCATG00000041794	XRN1	99	75.116	Cercocebus_atys
ENSMGAG00000006333	XRN1	100	74.173	ENSCLAG00000001451	XRN1	97	84.488	Chinchilla_lanigera
ENSMGAG00000006333	XRN1	100	74.668	ENSCSAG00000011265	XRN1	99	74.668	Chlorocebus_sabaeus
ENSMGAG00000006333	XRN1	53	97.403	ENSCHOG00000013961	-	55	97.403	Choloepus_hoffmanni
ENSMGAG00000006333	XRN1	68	43.108	ENSCSAVG00000008584	-	96	42.903	Ciona_savignyi
ENSMGAG00000006333	XRN1	100	75.174	ENSCANG00000037495	XRN1	97	84.983	Colobus_angolensis_palliatus
ENSMGAG00000006333	XRN1	100	74.404	ENSCGRG00001019411	Xrn1	97	84.158	Cricetulus_griseus_chok1gshd
ENSMGAG00000006333	XRN1	100	74.404	ENSCGRG00000012464	Xrn1	97	84.158	Cricetulus_griseus_crigri
ENSMGAG00000006333	XRN1	93	65.656	ENSCSEG00000021285	xrn1	73	96.296	Cynoglossus_semilaevis
ENSMGAG00000006333	XRN1	65	69.928	ENSCVAG00000013089	xrn1	97	70.108	Cyprinodon_variegatus
ENSMGAG00000006333	XRN1	99	62.392	ENSDARG00000091652	xrn1	98	76.101	Danio_rerio
ENSMGAG00000006333	XRN1	99	73.547	ENSDORG00000013833	Xrn1	99	74.085	Dipodomys_ordii
ENSMGAG00000006333	XRN1	71	38.741	FBgn0020261	pcm	71	39.127	Drosophila_melanogaster
ENSMGAG00000006333	XRN1	87	92.793	ENSETEG00000003978	XRN1	88	93.548	Echinops_telfairi
ENSMGAG00000006333	XRN1	100	75.377	ENSEASG00005002687	XRN1	97	83.993	Equus_asinus_asinus
ENSMGAG00000006333	XRN1	100	74.033	ENSECAG00000008301	XRN1	99	74.495	Equus_caballus
ENSMGAG00000006333	XRN1	92	72.773	ENSEEUG00000011323	XRN1	91	73.100	Erinaceus_europaeus
ENSMGAG00000006333	XRN1	100	60.815	ENSELUG00000000169	xrn1	99	60.759	Esox_lucius
ENSMGAG00000006333	XRN1	100	70.366	ENSFCAG00000027589	XRN1	94	83.565	Felis_catus
ENSMGAG00000006333	XRN1	100	88.806	ENSFALG00000007021	XRN1	99	88.806	Ficedula_albicollis
ENSMGAG00000006333	XRN1	100	74.869	ENSFDAG00000020494	XRN1	97	84.653	Fukomys_damarensis
ENSMGAG00000006333	XRN1	81	66.468	ENSGMOG00000006396	xrn1	82	66.780	Gadus_morhua
ENSMGAG00000006333	XRN1	100	94.390	ENSGALG00000002706	XRN1	99	94.390	Gallus_gallus
ENSMGAG00000006333	XRN1	100	58.699	ENSGACG00000014328	xrn1	99	59.008	Gasterosteus_aculeatus
ENSMGAG00000006333	XRN1	94	85.169	ENSGAGG00000017535	XRN1	98	85.169	Gopherus_agassizii
ENSMGAG00000006333	XRN1	100	75.058	ENSGGOG00000008047	XRN1	99	75.058	Gorilla_gorilla
ENSMGAG00000006333	XRN1	94	69.478	ENSHBUG00000005908	xrn1	98	70.868	Haplochromis_burtoni
ENSMGAG00000006333	XRN1	100	75.580	ENSHGLG00000014476	XRN1	97	84.818	Heterocephalus_glaber_female
ENSMGAG00000006333	XRN1	100	75.638	ENSHGLG00100015130	XRN1	97	84.818	Heterocephalus_glaber_male
ENSMGAG00000006333	XRN1	94	68.277	ENSHCOG00000014062	xrn1	98	68.544	Hippocampus_comes
ENSMGAG00000006333	XRN1	99	60.604	ENSIPUG00000015229	xrn1	98	60.721	Ictalurus_punctatus
ENSMGAG00000006333	XRN1	100	75.696	ENSSTOG00000013552	XRN1	97	84.488	Ictidomys_tridecemlineatus
ENSMGAG00000006333	XRN1	99	73.473	ENSJJAG00000010863	Xrn1	99	84.132	Jaculus_jaculus
ENSMGAG00000006333	XRN1	94	59.559	ENSKMAG00000021356	xrn1	94	71.548	Kryptolebias_marmoratus
ENSMGAG00000006333	XRN1	100	58.917	ENSLBEG00000018656	xrn1	75	97.500	Labrus_bergylta
ENSMGAG00000006333	XRN1	99	70.435	ENSLACG00000009020	XRN1	99	70.469	Latimeria_chalumnae
ENSMGAG00000006333	XRN1	100	63.751	ENSLOCG00000007944	xrn1	99	63.751	Lepisosteus_oculatus
ENSMGAG00000006333	XRN1	61	83.828	ENSLAFG00000015426	XRN1	98	83.828	Loxodonta_africana
ENSMGAG00000006333	XRN1	100	75.174	ENSMFAG00000032599	XRN1	99	75.174	Macaca_fascicularis
ENSMGAG00000006333	XRN1	100	75.116	ENSMMUG00000014038	XRN1	99	75.116	Macaca_mulatta
ENSMGAG00000006333	XRN1	100	74.942	ENSMNEG00000034217	XRN1	99	74.942	Macaca_nemestrina
ENSMGAG00000006333	XRN1	91	69.520	ENSMAMG00000013219	xrn1	95	72.358	Mastacembelus_armatus
ENSMGAG00000006333	XRN1	100	59.232	ENSMZEG00005015099	xrn1	99	59.661	Maylandia_zebra
ENSMGAG00000006333	XRN1	100	75.246	ENSMICG00000048948	XRN1	99	75.334	Microcebus_murinus
ENSMGAG00000006333	XRN1	56	83.993	ENSMOCG00000008665	Xrn1	97	83.993	Microtus_ochrogaster
ENSMGAG00000006333	XRN1	100	74.856	ENSMODG00000021236	XRN1	99	75.317	Monodelphis_domestica
ENSMGAG00000006333	XRN1	100	56.634	ENSMALG00000004098	xrn1	99	56.830	Monopterus_albus
ENSMGAG00000006333	XRN1	100	67.131	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSMGAG00000006333	XRN1	100	72.616	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSMGAG00000006333	XRN1	100	73.008	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSMGAG00000006333	XRN1	100	72.500	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSMGAG00000006333	XRN1	100	74.322	ENSMPUG00000012040	XRN1	99	74.784	Mustela_putorius_furo
ENSMGAG00000006333	XRN1	100	74.811	ENSMLUG00000016885	XRN1	99	74.811	Myotis_lucifugus
ENSMGAG00000006333	XRN1	56	79.714	ENSNGAG00000023964	Xrn1	97	79.714	Nannospalax_galili
ENSMGAG00000006333	XRN1	100	74.767	ENSNLEG00000004726	XRN1	99	74.884	Nomascus_leucogenys
ENSMGAG00000006333	XRN1	73	98.649	ENSMEUG00000014473	-	74	98.750	Notamacropus_eugenii
ENSMGAG00000006333	XRN1	79	71.262	ENSOPRG00000007337	-	76	72.757	Ochotona_princeps
ENSMGAG00000006333	XRN1	100	60.526	ENSONIG00000016673	xrn1	98	62.844	Oreochromis_niloticus
ENSMGAG00000006333	XRN1	92	73.283	ENSOANG00000006735	XRN1	98	73.850	Ornithorhynchus_anatinus
ENSMGAG00000006333	XRN1	100	74.813	ENSOCUG00000001861	XRN1	99	74.870	Oryctolagus_cuniculus
ENSMGAG00000006333	XRN1	100	60.444	ENSORLG00000013005	xrn1	97	60.810	Oryzias_latipes
ENSMGAG00000006333	XRN1	94	70.192	ENSORLG00020005559	xrn1	99	60.835	Oryzias_latipes_hni
ENSMGAG00000006333	XRN1	100	60.159	ENSORLG00015022523	xrn1	95	70.789	Oryzias_latipes_hsok
ENSMGAG00000006333	XRN1	91	71.511	ENSOMEG00000015397	xrn1	98	71.511	Oryzias_melastigma
ENSMGAG00000006333	XRN1	100	72.491	ENSOGAG00000000170	XRN1	99	72.591	Otolemur_garnettii
ENSMGAG00000006333	XRN1	99	74.711	ENSOARG00000006343	XRN1	99	75.115	Ovis_aries
ENSMGAG00000006333	XRN1	100	74.521	ENSPPAG00000010180	XRN1	99	75.116	Pan_paniscus
ENSMGAG00000006333	XRN1	100	74.608	ENSPPRG00000007125	XRN1	99	75.073	Panthera_pardus
ENSMGAG00000006333	XRN1	100	74.666	ENSPTIG00000021081	XRN1	99	75.131	Panthera_tigris_altaica
ENSMGAG00000006333	XRN1	100	74.521	ENSPTRG00000015482	XRN1	99	75.116	Pan_troglodytes
ENSMGAG00000006333	XRN1	100	75.058	ENSPANG00000010638	XRN1	99	75.058	Papio_anubis
ENSMGAG00000006333	XRN1	100	83.430	ENSPSIG00000018050	XRN1	99	83.488	Pelodiscus_sinensis
ENSMGAG00000006333	XRN1	55	72.727	ENSPMGG00000002648	xrn1	95	74.795	Periophthalmus_magnuspinnatus
ENSMGAG00000006333	XRN1	56	83.993	ENSPEMG00000020610	Xrn1	97	83.993	Peromyscus_maniculatus_bairdii
ENSMGAG00000006333	XRN1	64	50.168	ENSPMAG00000002975	xrn1	99	47.819	Petromyzon_marinus
ENSMGAG00000006333	XRN1	100	76.914	ENSPCIG00000028735	XRN1	97	86.643	Phascolarctos_cinereus
ENSMGAG00000006333	XRN1	91	62.698	ENSPFOG00000013932	xrn1	97	62.761	Poecilia_formosa
ENSMGAG00000006333	XRN1	91	62.155	ENSPLAG00000021653	xrn1	97	62.524	Poecilia_latipinna
ENSMGAG00000006333	XRN1	89	62.804	ENSPMEG00000003076	xrn1	93	62.660	Poecilia_mexicana
ENSMGAG00000006333	XRN1	100	59.842	ENSPREG00000021147	xrn1	99	59.752	Poecilia_reticulata
ENSMGAG00000006333	XRN1	100	74.437	ENSPPYG00000014172	XRN1	99	74.437	Pongo_abelii
ENSMGAG00000006333	XRN1	84	76.637	ENSPCAG00000005638	XRN1	93	76.637	Procavia_capensis
ENSMGAG00000006333	XRN1	100	75.233	ENSPCOG00000013089	XRN1	97	84.818	Propithecus_coquereli
ENSMGAG00000006333	XRN1	93	80.548	ENSPVAG00000016265	XRN1	91	80.548	Pteropus_vampyrus
ENSMGAG00000006333	XRN1	94	69.952	ENSPNYG00000010570	xrn1	97	69.952	Pundamilia_nyererei
ENSMGAG00000006333	XRN1	99	59.317	ENSPNAG00000023531	xrn1	98	59.514	Pygocentrus_nattereri
ENSMGAG00000006333	XRN1	100	73.736	ENSRNOG00000042951	Xrn1	99	74.012	Rattus_norvegicus
ENSMGAG00000006333	XRN1	100	74.593	ENSRBIG00000041227	XRN1	99	74.593	Rhinopithecus_bieti
ENSMGAG00000006333	XRN1	66	52.187	YGL173C	XRN1	79	32.985	Saccharomyces_cerevisiae
ENSMGAG00000006333	XRN1	100	74.593	ENSSBOG00000029561	XRN1	99	74.593	Saimiri_boliviensis_boliviensis
ENSMGAG00000006333	XRN1	99	76.641	ENSSHAG00000016207	XRN1	100	77.106	Sarcophilus_harrisii
ENSMGAG00000006333	XRN1	100	59.837	ENSSFOG00015024211	xrn1	99	60.186	Scleropages_formosus
ENSMGAG00000006333	XRN1	91	69.943	ENSSMAG00000016534	xrn1	95	69.943	Scophthalmus_maximus
ENSMGAG00000006333	XRN1	88	70.246	ENSSDUG00000010306	xrn1	96	70.468	Seriola_dumerili
ENSMGAG00000006333	XRN1	95	67.355	ENSSLDG00000021543	xrn1	99	67.559	Seriola_lalandi_dorsalis
ENSMGAG00000006333	XRN1	67	75.801	ENSSARG00000007741	-	82	75.801	Sorex_araneus
ENSMGAG00000006333	XRN1	100	90.215	ENSTGUG00000008498	XRN1	99	90.215	Taeniopygia_guttata
ENSMGAG00000006333	XRN1	95	68.248	ENSTRUG00000004895	xrn1	99	70.221	Takifugu_rubripes
ENSMGAG00000006333	XRN1	100	56.487	ENSTNIG00000017615	xrn1	99	56.981	Tetraodon_nigroviridis
ENSMGAG00000006333	XRN1	76	84.270	ENSTBEG00000003256	XRN1	87	75.662	Tupaia_belangeri
ENSMGAG00000006333	XRN1	99	70.306	ENSTTRG00000012914	XRN1	99	70.711	Tursiops_truncatus
ENSMGAG00000006333	XRN1	100	75.566	ENSUAMG00000001608	XRN1	99	82.994	Ursus_americanus
ENSMGAG00000006333	XRN1	100	75.740	ENSUMAG00000013625	XRN1	99	76.204	Ursus_maritimus
ENSMGAG00000006333	XRN1	100	70.843	ENSVPAG00000004690	XRN1	99	71.247	Vicugna_pacos
ENSMGAG00000006333	XRN1	100	75.668	ENSVVUG00000024461	XRN1	97	84.818	Vulpes_vulpes
ENSMGAG00000006333	XRN1	100	66.935	ENSXETG00000000619	xrn1	91	82.235	Xenopus_tropicalis
ENSMGAG00000006333	XRN1	100	59.829	ENSXCOG00000007917	xrn1	99	59.920	Xiphophorus_couchianus
ENSMGAG00000006333	XRN1	90	70.346	ENSXMAG00000018320	xrn1	97	70.758	Xiphophorus_maculatus