EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMGAG00000007728 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Meleagris_gallopavo
Status: putative
Strand: Plus strand
Length: 7406 bases
Position: chr9:16478658-16486063
Accession: 20439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMGAP00000007884	Smg4_UPF3	PF03467.15	3.4e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMGAT00000008668	UPF3B-201	1173	-	ENSMGAP00000007884	390 (aa)	-	G1N6W5

Gene Model

Click here to download ENSMGAG00000007728's gene model file

Pathways

Pathway ID	Pathway Name	Source
mgp03013	RNA transport	KEGG
mgp03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMGAG00000007728's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMGAG00000007728	UPF3B	99	70.361	ENSG00000125351	UPF3B	81	67.766	Homo_sapiens
ENSMGAG00000007728	UPF3B	99	58.869	ENSAPOG00000012775	upf3b	83	58.869	Acanthochromis_polyacanthus
ENSMGAG00000007728	UPF3B	99	70.361	ENSAMEG00000000163	UPF3B	81	69.072	Ailuropoda_melanoleuca
ENSMGAG00000007728	UPF3B	99	52.538	ENSACIG00000013582	upf3b	83	53.453	Amphilophus_citrinellus
ENSMGAG00000007728	UPF3B	99	57.584	ENSAOCG00000000706	upf3b	83	57.216	Amphiprion_ocellaris
ENSMGAG00000007728	UPF3B	99	58.869	ENSAPEG00000005545	upf3b	83	58.612	Amphiprion_percula
ENSMGAG00000007728	UPF3B	94	60.434	ENSATEG00000018742	upf3b	80	60.976	Anabas_testudineus
ENSMGAG00000007728	UPF3B	99	78.261	ENSACAG00000003625	UPF3B	83	77.749	Anolis_carolinensis
ENSMGAG00000007728	UPF3B	99	63.660	ENSANAG00000025598	-	80	60.825	Aotus_nancymaae
ENSMGAG00000007728	UPF3B	99	70.103	ENSANAG00000021894	-	71	80.978	Aotus_nancymaae
ENSMGAG00000007728	UPF3B	99	58.015	ENSACLG00000001649	upf3b	84	58.015	Astatotilapia_calliptera
ENSMGAG00000007728	UPF3B	59	81.522	ENSBTAG00000035615	UPF3B	72	81.522	Bos_taurus
ENSMGAG00000007728	UPF3B	99	69.588	ENSCJAG00000004975	UPF3B	71	80.435	Callithrix_jacchus
ENSMGAG00000007728	UPF3B	97	70.079	ENSCAFG00000018426	UPF3B	81	66.925	Canis_familiaris
ENSMGAG00000007728	UPF3B	99	67.010	ENSCAFG00020004074	UPF3B	80	63.198	Canis_lupus_dingo
ENSMGAG00000007728	UPF3B	92	49.304	ENSCHIG00000011454	-	80	42.931	Capra_hircus
ENSMGAG00000007728	UPF3B	97	68.020	ENSCHIG00000018011	-	72	81.522	Capra_hircus
ENSMGAG00000007728	UPF3B	99	67.830	ENSCHIG00000000247	-	81	66.584	Capra_hircus
ENSMGAG00000007728	UPF3B	99	70.876	ENSTSYG00000014690	UPF3B	70	79.032	Carlito_syrichta
ENSMGAG00000007728	UPF3B	53	79.355	ENSCCAG00000021964	-	71	79.355	Cebus_capucinus
ENSMGAG00000007728	UPF3B	99	70.361	ENSCATG00000017506	UPF3B	71	80.978	Cercocebus_atys
ENSMGAG00000007728	UPF3B	98	70.284	ENSCLAG00000003260	UPF3B	81	69.072	Chinchilla_lanigera
ENSMGAG00000007728	UPF3B	99	68.080	ENSCSAG00000018348	UPF3B	81	65.602	Chlorocebus_sabaeus
ENSMGAG00000007728	UPF3B	99	80.513	ENSCPBG00000020685	UPF3B	83	80.513	Chrysemys_picta_bellii
ENSMGAG00000007728	UPF3B	61	80.978	ENSCANG00000029220	UPF3B	71	80.978	Colobus_angolensis_palliatus
ENSMGAG00000007728	UPF3B	68	65.543	ENSCGRG00001013643	-	70	65.649	Cricetulus_griseus_chok1gshd
ENSMGAG00000007728	UPF3B	99	63.590	ENSCGRG00001006858	-	81	61.616	Cricetulus_griseus_chok1gshd
ENSMGAG00000007728	UPF3B	99	63.333	ENSCGRG00000007627	Upf3b	91	61.616	Cricetulus_griseus_crigri
ENSMGAG00000007728	UPF3B	91	58.678	ENSCSEG00000002046	upf3b	78	57.368	Cynoglossus_semilaevis
ENSMGAG00000007728	UPF3B	94	57.609	ENSCVAG00000005030	upf3b	80	57.609	Cyprinodon_variegatus
ENSMGAG00000007728	UPF3B	91	58.678	ENSDARG00000000489	upf3b	78	60.055	Danio_rerio
ENSMGAG00000007728	UPF3B	99	68.080	ENSDNOG00000008665	UPF3B	81	65.602	Dasypus_novemcinctus
ENSMGAG00000007728	UPF3B	98	67.700	ENSDORG00000006077	Upf3b	81	64.467	Dipodomys_ordii
ENSMGAG00000007728	UPF3B	99	68.974	ENSEASG00005012919	UPF3B	81	67.436	Equus_asinus_asinus
ENSMGAG00000007728	UPF3B	99	68.974	ENSECAG00000016947	UPF3B	81	67.436	Equus_caballus
ENSMGAG00000007728	UPF3B	65	64.453	ENSELUG00000020389	upf3b	78	57.256	Esox_lucius
ENSMGAG00000007728	UPF3B	99	69.487	ENSFCAG00000004388	UPF3B	81	68.205	Felis_catus
ENSMGAG00000007728	UPF3B	99	80.098	ENSFALG00000001569	UPF3B	81	85.995	Ficedula_albicollis
ENSMGAG00000007728	UPF3B	99	70.103	ENSFDAG00000018869	UPF3B	81	68.814	Fukomys_damarensis
ENSMGAG00000007728	UPF3B	91	57.895	ENSFHEG00000017895	upf3b	78	57.895	Fundulus_heteroclitus
ENSMGAG00000007728	UPF3B	91	54.743	ENSGMOG00000001621	upf3b	77	53.951	Gadus_morhua
ENSMGAG00000007728	UPF3B	99	97.158	ENSGALG00000008618	UPF3B	81	97.158	Gallus_gallus
ENSMGAG00000007728	UPF3B	92	59.003	ENSGAFG00000000829	upf3b	78	58.726	Gambusia_affinis
ENSMGAG00000007728	UPF3B	89	59.104	ENSGACG00000017435	upf3b	67	76.087	Gasterosteus_aculeatus
ENSMGAG00000007728	UPF3B	99	84.615	ENSGAGG00000001219	UPF3B	83	84.615	Gopherus_agassizii
ENSMGAG00000007728	UPF3B	99	70.361	ENSGGOG00000023995	UPF3B	71	80.978	Gorilla_gorilla
ENSMGAG00000007728	UPF3B	99	58.015	ENSHBUG00000017393	upf3b	84	58.015	Haplochromis_burtoni
ENSMGAG00000007728	UPF3B	79	65.705	ENSHGLG00000011189	-	73	66.134	Heterocephalus_glaber_female
ENSMGAG00000007728	UPF3B	98	70.026	ENSHGLG00000019582	-	81	68.814	Heterocephalus_glaber_female
ENSMGAG00000007728	UPF3B	79	66.026	ENSHGLG00100001889	-	73	65.495	Heterocephalus_glaber_male
ENSMGAG00000007728	UPF3B	98	67.959	ENSHGLG00100002042	-	80	66.753	Heterocephalus_glaber_male
ENSMGAG00000007728	UPF3B	91	64.187	ENSHCOG00000017004	upf3b	77	62.327	Hippocampus_comes
ENSMGAG00000007728	UPF3B	99	59.033	ENSIPUG00000019249	upf3b	83	58.270	Ictalurus_punctatus
ENSMGAG00000007728	UPF3B	98	68.734	ENSSTOG00000001101	UPF3B	81	67.784	Ictidomys_tridecemlineatus
ENSMGAG00000007728	UPF3B	99	67.179	ENSJJAG00000000053	Upf3b	81	64.232	Jaculus_jaculus
ENSMGAG00000007728	UPF3B	99	55.754	ENSKMAG00000020300	upf3b	83	57.692	Kryptolebias_marmoratus
ENSMGAG00000007728	UPF3B	99	61.307	ENSLACG00000008691	UPF3B	85	61.538	Latimeria_chalumnae
ENSMGAG00000007728	UPF3B	50	78.173	ENSLOCG00000015238	upf3b	83	59.008	Lepisosteus_oculatus
ENSMGAG00000007728	UPF3B	99	70.619	ENSLAFG00000001267	UPF3B	81	69.588	Loxodonta_africana
ENSMGAG00000007728	UPF3B	99	70.103	ENSMFAG00000045414	UPF3B	71	80.978	Macaca_fascicularis
ENSMGAG00000007728	UPF3B	99	70.103	ENSMMUG00000020222	UPF3B	71	80.978	Macaca_mulatta
ENSMGAG00000007728	UPF3B	99	70.103	ENSMNEG00000039794	UPF3B	71	80.978	Macaca_nemestrina
ENSMGAG00000007728	UPF3B	99	70.361	ENSMLEG00000010999	UPF3B	71	80.978	Mandrillus_leucophaeus
ENSMGAG00000007728	UPF3B	99	58.015	ENSMZEG00005007871	upf3b	84	58.015	Maylandia_zebra
ENSMGAG00000007728	UPF3B	99	61.538	ENSMAUG00000008705	Upf3b	81	60.354	Mesocricetus_auratus
ENSMGAG00000007728	UPF3B	61	80.435	ENSMICG00000001743	UPF3B	71	80.435	Microcebus_murinus
ENSMGAG00000007728	UPF3B	98	63.750	ENSMOCG00000017893	Upf3b	81	62.594	Microtus_ochrogaster
ENSMGAG00000007728	UPF3B	98	55.670	ENSMMOG00000004183	upf3b	83	54.780	Mola_mola
ENSMGAG00000007728	UPF3B	99	77.041	ENSMODG00000010232	UPF3B	91	75.255	Monodelphis_domestica
ENSMGAG00000007728	UPF3B	61	67.220	ENSMALG00000008042	upf3b	79	59.016	Monopterus_albus
ENSMGAG00000007728	UPF3B	99	67.692	MGP_CAROLIEiJ_G0032999	Upf3b	84	66.818	Mus_caroli
ENSMGAG00000007728	UPF3B	99	66.154	ENSMUSG00000036572	Upf3b	84	66.818	Mus_musculus
ENSMGAG00000007728	UPF3B	99	66.923	MGP_PahariEiJ_G0031543	Upf3b	84	66.968	Mus_pahari
ENSMGAG00000007728	UPF3B	99	66.154	MGP_SPRETEiJ_G0034152	Upf3b	84	66.818	Mus_spretus
ENSMGAG00000007728	UPF3B	97	70.866	ENSMPUG00000001531	UPF3B	81	67.700	Mustela_putorius_furo
ENSMGAG00000007728	UPF3B	99	70.103	ENSMLUG00000010821	UPF3B	81	68.814	Myotis_lucifugus
ENSMGAG00000007728	UPF3B	99	64.359	ENSNGAG00000008231	Upf3b	81	62.879	Nannospalax_galili
ENSMGAG00000007728	UPF3B	99	70.361	ENSNLEG00000014897	UPF3B	81	67.766	Nomascus_leucogenys
ENSMGAG00000007728	UPF3B	71	88.333	ENSMEUG00000015615	UPF3B	66	88.333	Notamacropus_eugenii
ENSMGAG00000007728	UPF3B	99	66.150	ENSODEG00000002186	-	80	66.150	Octodon_degus
ENSMGAG00000007728	UPF3B	91	62.088	ENSONIG00000002536	upf3b	84	56.962	Oreochromis_niloticus
ENSMGAG00000007728	UPF3B	99	67.332	ENSOCUG00000010213	UPF3B	81	66.085	Oryctolagus_cuniculus
ENSMGAG00000007728	UPF3B	92	59.003	ENSORLG00000001026	upf3b	85	58.726	Oryzias_latipes
ENSMGAG00000007728	UPF3B	91	50.139	ENSORLG00020014317	upf3a	73	49.171	Oryzias_latipes_hni
ENSMGAG00000007728	UPF3B	92	58.449	ENSORLG00020003758	upf3b	79	58.011	Oryzias_latipes_hni
ENSMGAG00000007728	UPF3B	92	58.840	ENSORLG00015012954	upf3b	79	58.564	Oryzias_latipes_hsok
ENSMGAG00000007728	UPF3B	97	57.403	ENSOMEG00000014736	upf3b	79	59.116	Oryzias_melastigma
ENSMGAG00000007728	UPF3B	97	64.829	ENSOGAG00000033003	-	81	63.780	Otolemur_garnettii
ENSMGAG00000007728	UPF3B	99	69.845	ENSOGAG00000004643	-	81	68.557	Otolemur_garnettii
ENSMGAG00000007728	UPF3B	99	67.327	ENSOARG00000016051	-	81	66.089	Ovis_aries
ENSMGAG00000007728	UPF3B	99	52.320	ENSOARG00000007869	-	88	49.354	Ovis_aries
ENSMGAG00000007728	UPF3B	99	70.361	ENSPPAG00000040390	UPF3B	71	80.978	Pan_paniscus
ENSMGAG00000007728	UPF3B	99	70.361	ENSPPRG00000023536	UPF3B	81	69.072	Panthera_pardus
ENSMGAG00000007728	UPF3B	99	66.915	ENSPTIG00000015264	UPF3B	71	81.522	Panthera_tigris_altaica
ENSMGAG00000007728	UPF3B	99	70.361	ENSPTRG00000022228	UPF3B	71	80.978	Pan_troglodytes
ENSMGAG00000007728	UPF3B	99	70.361	ENSPANG00000000900	UPF3B	71	80.978	Papio_anubis
ENSMGAG00000007728	UPF3B	99	56.995	ENSPKIG00000019226	upf3b	83	55.065	Paramormyrops_kingsleyae
ENSMGAG00000007728	UPF3B	66	88.550	ENSPSIG00000005833	UPF3B	92	88.462	Pelodiscus_sinensis
ENSMGAG00000007728	UPF3B	51	73.604	ENSPMGG00000016067	upf3b	69	75.132	Periophthalmus_magnuspinnatus
ENSMGAG00000007728	UPF3B	99	66.240	ENSPEMG00000012352	Upf3b	81	62.469	Peromyscus_maniculatus_bairdii
ENSMGAG00000007728	UPF3B	96	75.328	ENSPCIG00000028914	UPF3B	81	72.704	Phascolarctos_cinereus
ENSMGAG00000007728	UPF3B	92	59.280	ENSPLAG00000005105	upf3b	78	59.003	Poecilia_latipinna
ENSMGAG00000007728	UPF3B	92	59.280	ENSPLAG00000019922	upf3b	78	59.003	Poecilia_latipinna
ENSMGAG00000007728	UPF3B	92	59.557	ENSPMEG00000023532	upf3b	78	59.280	Poecilia_mexicana
ENSMGAG00000007728	UPF3B	59	80.541	ENSPPYG00000020675	-	69	80.541	Pongo_abelii
ENSMGAG00000007728	UPF3B	98	68.500	ENSPCAG00000009464	UPF3B	81	67.332	Procavia_capensis
ENSMGAG00000007728	UPF3B	99	69.330	ENSPCOG00000021960	UPF3B	71	80.435	Propithecus_coquereli
ENSMGAG00000007728	UPF3B	97	56.345	ENSPVAG00000014075	UPF3B	80	55.076	Pteropus_vampyrus
ENSMGAG00000007728	UPF3B	99	58.056	ENSPNYG00000009846	upf3b	84	58.056	Pundamilia_nyererei
ENSMGAG00000007728	UPF3B	99	59.343	ENSPNAG00000021528	upf3b	74	77.297	Pygocentrus_nattereri
ENSMGAG00000007728	UPF3B	99	66.154	ENSRNOG00000039994	Upf3b	81	64.141	Rattus_norvegicus
ENSMGAG00000007728	UPF3B	98	69.689	ENSRBIG00000037219	UPF3B	99	67.939	Rhinopithecus_bieti
ENSMGAG00000007728	UPF3B	99	70.361	ENSRROG00000041031	UPF3B	71	80.978	Rhinopithecus_roxellana
ENSMGAG00000007728	UPF3B	99	70.103	ENSSBOG00000019740	UPF3B	71	80.978	Saimiri_boliviensis_boliviensis
ENSMGAG00000007728	UPF3B	97	78.182	ENSSHAG00000008634	UPF3B	81	76.276	Sarcophilus_harrisii
ENSMGAG00000007728	UPF3B	99	61.240	ENSSFOG00015005614	upf3b	85	59.640	Scleropages_formosus
ENSMGAG00000007728	UPF3B	91	61.111	ENSSMAG00000012913	upf3b	83	56.555	Scophthalmus_maximus
ENSMGAG00000007728	UPF3B	98	57.584	ENSSDUG00000005682	upf3b	83	59.126	Seriola_dumerili
ENSMGAG00000007728	UPF3B	98	57.069	ENSSLDG00000003130	upf3b	83	58.612	Seriola_lalandi_dorsalis
ENSMGAG00000007728	UPF3B	99	62.935	ENSSARG00000004147	UPF3B	91	61.707	Sorex_araneus
ENSMGAG00000007728	UPF3B	99	77.099	ENSSPUG00000013082	UPF3B	81	76.786	Sphenodon_punctatus
ENSMGAG00000007728	UPF3B	99	57.033	ENSSPAG00000009989	upf3b	84	57.801	Stegastes_partitus
ENSMGAG00000007728	UPF3B	99	69.845	ENSSSCG00000012617	UPF3B	81	68.814	Sus_scrofa
ENSMGAG00000007728	UPF3B	99	93.540	ENSTGUG00000003413	UPF3B	91	93.540	Taeniopygia_guttata
ENSMGAG00000007728	UPF3B	96	59.367	ENSTRUG00000010645	upf3b	83	59.103	Takifugu_rubripes
ENSMGAG00000007728	UPF3B	91	54.420	ENSTNIG00000015763	upf3b	77	51.648	Tetraodon_nigroviridis
ENSMGAG00000007728	UPF3B	99	56.110	ENSTBEG00000003229	UPF3B	81	55.611	Tupaia_belangeri
ENSMGAG00000007728	UPF3B	99	66.923	ENSUAMG00000024565	UPF3B	81	63.384	Ursus_americanus
ENSMGAG00000007728	UPF3B	99	67.095	ENSUMAG00000002150	UPF3B	82	62.629	Ursus_maritimus
ENSMGAG00000007728	UPF3B	99	68.080	ENSVPAG00000009971	UPF3B	96	66.833	Vicugna_pacos
ENSMGAG00000007728	UPF3B	99	67.010	ENSVVUG00000011594	UPF3B	80	63.198	Vulpes_vulpes
ENSMGAG00000007728	UPF3B	96	58.005	ENSXETG00000007440	upf3b	84	53.684	Xenopus_tropicalis
ENSMGAG00000007728	UPF3B	91	55.899	ENSXCOG00000016586	upf3b	59	77.311	Xiphophorus_couchianus
ENSMGAG00000007728	UPF3B	92	59.834	ENSXMAG00000013680	upf3b	79	59.116	Xiphophorus_maculatus