EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMGAG00000007776 (Gene tree)
Gene ID
-
Gene Symbol
LSM3
Alias
SMX4|USS2|YLR438C
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Meleagris_gallopavo
Status
putative
Strand
Plus strand
Length
1516 bases
Position
chr14:11356245-11357760
Accession
17874
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMGAP00000007917LSMPF01423.222.2e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMGAT00000008705LSM3-201288-ENSMGAP0000000791796 (aa)-G1N6Z0
Gene Model
Click here to download ENSMGAG00000007776's gene model file
Pathways
Pathway IDPathway NameSource
mgp03018RNA degradationKEGG
mgp03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMGAG00000007776's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMGAG00000007776LSM37834.667ENSMGAG00000012117LSM58234.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMGAG00000007776LSM3100100.000ENSG00000170860LSM394100.000Homo_sapiens
ENSMGAG00000007776LSM310096.875ENSAPOG00000018947lsm39496.875Acanthochromis_polyacanthus
ENSMGAG00000007776LSM3100100.000ENSAMEG00000009405LSM394100.000Ailuropoda_melanoleuca
ENSMGAG00000007776LSM310095.833ENSACIG00000004574lsm36795.833Amphilophus_citrinellus
ENSMGAG00000007776LSM310096.875ENSAOCG00000007658lsm39496.875Amphiprion_ocellaris
ENSMGAG00000007776LSM310096.875ENSAPEG00000018621lsm39496.875Amphiprion_percula
ENSMGAG00000007776LSM310096.875ENSATEG00000005153lsm39496.875Anabas_testudineus
ENSMGAG00000007776LSM399100.000ENSAPLG00000014499LSM3100100.000Anas_platyrhynchos
ENSMGAG00000007776LSM3100100.000ENSACAG00000013503LSM394100.000Anolis_carolinensis
ENSMGAG00000007776LSM310096.875ENSANAG00000002903-9496.875Aotus_nancymaae
ENSMGAG00000007776LSM3100100.000ENSANAG00000034627LSM394100.000Aotus_nancymaae
ENSMGAG00000007776LSM310096.875ENSACLG00000001726-9396.875Astatotilapia_calliptera
ENSMGAG00000007776LSM310098.958ENSAMXG00000041214lsm39498.958Astyanax_mexicanus
ENSMGAG00000007776LSM3100100.000ENSBTAG00000007363LSM3100100.000Bos_taurus
ENSMGAG00000007776LSM39675.000WBGene00003077lsm-39075.000Caenorhabditis_elegans
ENSMGAG00000007776LSM310097.917ENSCAFG00000001760LSM39497.917Canis_familiaris
ENSMGAG00000007776LSM310097.917ENSCAFG00020017266-9497.917Canis_lupus_dingo
ENSMGAG00000007776LSM310090.625ENSCAFG00020016680-9490.625Canis_lupus_dingo
ENSMGAG00000007776LSM310097.917ENSCAFG00020021584-9497.917Canis_lupus_dingo
ENSMGAG00000007776LSM310096.875ENSCAFG00020026452-9496.875Canis_lupus_dingo
ENSMGAG00000007776LSM310090.099ENSCAFG00020020950-9490.099Canis_lupus_dingo
ENSMGAG00000007776LSM3100100.000ENSCHIG00000024650LSM394100.000Capra_hircus
ENSMGAG00000007776LSM3100100.000ENSTSYG00000005204-94100.000Carlito_syrichta
ENSMGAG00000007776LSM39980.000ENSTSYG00000028528-9280.000Carlito_syrichta
ENSMGAG00000007776LSM3100100.000ENSCAPG00000015760LSM3100100.000Cavia_aperea
ENSMGAG00000007776LSM3100100.000ENSCPOG00000034071LSM394100.000Cavia_porcellus
ENSMGAG00000007776LSM3100100.000ENSCCAG00000036499-94100.000Cebus_capucinus
ENSMGAG00000007776LSM310080.208ENSCCAG00000032763-9480.208Cebus_capucinus
ENSMGAG00000007776LSM3100100.000ENSCCAG00000019503-94100.000Cebus_capucinus
ENSMGAG00000007776LSM39978.947ENSCATG00000031630-9278.947Cercocebus_atys
ENSMGAG00000007776LSM3100100.000ENSCATG00000039421LSM394100.000Cercocebus_atys
ENSMGAG00000007776LSM3100100.000ENSCLAG00000015997LSM394100.000Chinchilla_lanigera
ENSMGAG00000007776LSM310094.792ENSCSAG00000019525-9494.792Chlorocebus_sabaeus
ENSMGAG00000007776LSM3100100.000ENSCPBG00000014531LSM394100.000Chrysemys_picta_bellii
ENSMGAG00000007776LSM310083.505ENSCSAVG00000009542-9383.505Ciona_savignyi
ENSMGAG00000007776LSM310096.875ENSCANG00000038037-9496.875Colobus_angolensis_palliatus
ENSMGAG00000007776LSM310095.833ENSCANG00000018782-9495.833Colobus_angolensis_palliatus
ENSMGAG00000007776LSM3100100.000ENSCANG00000033944-94100.000Colobus_angolensis_palliatus
ENSMGAG00000007776LSM3100100.000ENSCGRG00001017598Lsm39798.958Cricetulus_griseus_chok1gshd
ENSMGAG00000007776LSM310084.375ENSCGRG00001011396-9684.375Cricetulus_griseus_chok1gshd
ENSMGAG00000007776LSM39977.083ENSCGRG00001008639-9777.083Cricetulus_griseus_chok1gshd
ENSMGAG00000007776LSM3100100.000ENSCGRG00000016159Lsm39798.958Cricetulus_griseus_crigri
ENSMGAG00000007776LSM39984.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSMGAG00000007776LSM310096.875ENSCSEG00000015071lsm37296.875Cynoglossus_semilaevis
ENSMGAG00000007776LSM310095.833ENSCVAG00000006933lsm39495.833Cyprinodon_variegatus
ENSMGAG00000007776LSM310098.958ENSDARG00000089663lsm39498.958Danio_rerio
ENSMGAG00000007776LSM3100100.000ENSDNOG00000030808LSM394100.000Dasypus_novemcinctus
ENSMGAG00000007776LSM3100100.000ENSDORG00000006894-94100.000Dipodomys_ordii
ENSMGAG00000007776LSM310080.208ENSDORG00000024490-9380.208Dipodomys_ordii
ENSMGAG00000007776LSM39978.947FBgn0051184LSm39278.947Drosophila_melanogaster
ENSMGAG00000007776LSM3100100.000ENSETEG00000016207LSM394100.000Echinops_telfairi
ENSMGAG00000007776LSM39992.632ENSEBUG00000004943lsm39392.632Eptatretus_burgeri
ENSMGAG00000007776LSM3100100.000ENSEASG00005015443LSM394100.000Equus_asinus_asinus
ENSMGAG00000007776LSM3100100.000ENSECAG00000007803LSM394100.000Equus_caballus
ENSMGAG00000007776LSM310097.917ENSELUG00000018922lsm39497.917Esox_lucius
ENSMGAG00000007776LSM310073.958ENSFCAG00000044344-9473.958Felis_catus
ENSMGAG00000007776LSM3100100.000ENSFCAG00000038453LSM394100.000Felis_catus
ENSMGAG00000007776LSM3100100.000ENSFALG00000012644LSM394100.000Ficedula_albicollis
ENSMGAG00000007776LSM3100100.000ENSFDAG00000011470LSM394100.000Fukomys_damarensis
ENSMGAG00000007776LSM310096.875ENSFHEG00000000876lsm39496.875Fundulus_heteroclitus
ENSMGAG00000007776LSM39996.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSMGAG00000007776LSM310096.875ENSGAFG00000013965lsm39496.875Gambusia_affinis
ENSMGAG00000007776LSM310096.875ENSGACG00000003488lsm39496.875Gasterosteus_aculeatus
ENSMGAG00000007776LSM3100100.000ENSGAGG00000025707LSM394100.000Gopherus_agassizii
ENSMGAG00000007776LSM3100100.000ENSGGOG00000010006LSM394100.000Gorilla_gorilla
ENSMGAG00000007776LSM310096.875ENSHBUG00000022399lsm39496.875Haplochromis_burtoni
ENSMGAG00000007776LSM310079.167ENSHGLG00000015564-9379.167Heterocephalus_glaber_female
ENSMGAG00000007776LSM3100100.000ENSHGLG00000000651LSM394100.000Heterocephalus_glaber_female
ENSMGAG00000007776LSM310079.167ENSHGLG00100010658-9379.167Heterocephalus_glaber_male
ENSMGAG00000007776LSM3100100.000ENSHGLG00100011343LSM394100.000Heterocephalus_glaber_male
ENSMGAG00000007776LSM310095.833ENSHCOG00000013481lsm39495.833Hippocampus_comes
ENSMGAG00000007776LSM310097.917ENSIPUG00000009207lsm39497.917Ictalurus_punctatus
ENSMGAG00000007776LSM3100100.000ENSSTOG00000006842LSM394100.000Ictidomys_tridecemlineatus
ENSMGAG00000007776LSM310090.625ENSJJAG00000012797-9490.625Jaculus_jaculus
ENSMGAG00000007776LSM310075.000ENSJJAG00000018311-9375.000Jaculus_jaculus
ENSMGAG00000007776LSM3100100.000ENSJJAG00000017351Lsm394100.000Jaculus_jaculus
ENSMGAG00000007776LSM310095.833ENSKMAG00000015182lsm39495.833Kryptolebias_marmoratus
ENSMGAG00000007776LSM310095.833ENSLBEG00000021292lsm39895.833Labrus_bergylta
ENSMGAG00000007776LSM310097.917ENSLOCG00000013560lsm39497.917Lepisosteus_oculatus
ENSMGAG00000007776LSM3100100.000ENSLAFG00000023308LSM393100.000Loxodonta_africana
ENSMGAG00000007776LSM3100100.000ENSMFAG00000003185LSM394100.000Macaca_fascicularis
ENSMGAG00000007776LSM3100100.000ENSMMUG00000023126LSM394100.000Macaca_mulatta
ENSMGAG00000007776LSM39980.000ENSMMUG00000002294-9180.000Macaca_mulatta
ENSMGAG00000007776LSM310079.167ENSMMUG00000043596-9479.167Macaca_mulatta
ENSMGAG00000007776LSM3100100.000ENSMNEG00000043632LSM394100.000Macaca_nemestrina
ENSMGAG00000007776LSM39980.000ENSMNEG00000037686-9280.000Macaca_nemestrina
ENSMGAG00000007776LSM3100100.000ENSMLEG00000036162LSM394100.000Mandrillus_leucophaeus
ENSMGAG00000007776LSM310096.875ENSMAMG00000012807lsm39496.875Mastacembelus_armatus
ENSMGAG00000007776LSM310096.875ENSMZEG00005016682lsm36996.875Maylandia_zebra
ENSMGAG00000007776LSM399100.000ENSMICG00000032361-93100.000Microcebus_murinus
ENSMGAG00000007776LSM39985.263ENSMICG00000027821-9385.263Microcebus_murinus
ENSMGAG00000007776LSM3100100.000ENSMOCG00000014269Lsm394100.000Microtus_ochrogaster
ENSMGAG00000007776LSM310095.833ENSMMOG00000020715lsm39495.833Mola_mola
ENSMGAG00000007776LSM3100100.000ENSMODG00000007275LSM39798.958Monodelphis_domestica
ENSMGAG00000007776LSM310096.875ENSMALG00000006485lsm39496.875Monopterus_albus
ENSMGAG00000007776LSM3100100.000ENSMUSG00000034192Lsm394100.000Mus_musculus
ENSMGAG00000007776LSM3100100.000MGP_PahariEiJ_G0022402Lsm394100.000Mus_pahari
ENSMGAG00000007776LSM3100100.000MGP_SPRETEiJ_G0029681Lsm394100.000Mus_spretus
ENSMGAG00000007776LSM38292.405ENSMPUG00000017256-9392.405Mustela_putorius_furo
ENSMGAG00000007776LSM39788.172ENSMPUG00000019120-9188.172Mustela_putorius_furo
ENSMGAG00000007776LSM310093.750ENSMLUG00000024700-9493.750Myotis_lucifugus
ENSMGAG00000007776LSM3100100.000ENSMLUG00000010677LSM394100.000Myotis_lucifugus
ENSMGAG00000007776LSM3100100.000ENSNGAG00000022450Lsm394100.000Nannospalax_galili
ENSMGAG00000007776LSM39981.053ENSNGAG00000010207-9381.053Nannospalax_galili
ENSMGAG00000007776LSM310073.958ENSNGAG00000013716-9373.958Nannospalax_galili
ENSMGAG00000007776LSM310096.875ENSNBRG00000014318lsm39496.875Neolamprologus_brichardi
ENSMGAG00000007776LSM3100100.000ENSNLEG00000005079LSM394100.000Nomascus_leucogenys
ENSMGAG00000007776LSM310090.625ENSNLEG00000030229-9490.625Nomascus_leucogenys
ENSMGAG00000007776LSM310098.958ENSODEG00000019740-9498.958Octodon_degus
ENSMGAG00000007776LSM310097.917ENSODEG00000019158-9497.917Octodon_degus
ENSMGAG00000007776LSM310092.708ENSODEG00000019403-9492.708Octodon_degus
ENSMGAG00000007776LSM3100100.000ENSODEG00000001726LSM394100.000Octodon_degus
ENSMGAG00000007776LSM310096.875ENSONIG00000000370lsm39496.875Oreochromis_niloticus
ENSMGAG00000007776LSM310096.875ENSONIG00000021369-9496.875Oreochromis_niloticus
ENSMGAG00000007776LSM3100100.000ENSOANG00000012273LSM394100.000Ornithorhynchus_anatinus
ENSMGAG00000007776LSM310094.792ENSOCUG00000011088-9494.792Oryctolagus_cuniculus
ENSMGAG00000007776LSM3100100.000ENSOCUG00000027653-94100.000Oryctolagus_cuniculus
ENSMGAG00000007776LSM310095.833ENSORLG00000025900lsm39495.833Oryzias_latipes
ENSMGAG00000007776LSM310095.833ENSORLG00020007125lsm39495.833Oryzias_latipes_hni
ENSMGAG00000007776LSM310095.833ENSORLG00015002944lsm39495.833Oryzias_latipes_hsok
ENSMGAG00000007776LSM310095.833ENSOMEG00000001915lsm39495.833Oryzias_melastigma
ENSMGAG00000007776LSM3100100.000ENSOGAG00000007659-94100.000Otolemur_garnettii
ENSMGAG00000007776LSM310089.583ENSOGAG00000033051-9489.583Otolemur_garnettii
ENSMGAG00000007776LSM310098.958ENSOGAG00000028858-9898.958Otolemur_garnettii
ENSMGAG00000007776LSM3100100.000ENSOARG00000000600LSM393100.000Ovis_aries
ENSMGAG00000007776LSM3100100.000ENSPPAG00000034074LSM394100.000Pan_paniscus
ENSMGAG00000007776LSM3100100.000ENSPPRG00000012912-94100.000Panthera_pardus
ENSMGAG00000007776LSM310092.708ENSPPRG00000010610-8492.708Panthera_pardus
ENSMGAG00000007776LSM310098.958ENSPPRG00000020953-9498.958Panthera_pardus
ENSMGAG00000007776LSM3100100.000ENSPTIG00000013072-94100.000Panthera_tigris_altaica
ENSMGAG00000007776LSM3100100.000ENSPTIG00000003463-94100.000Panthera_tigris_altaica
ENSMGAG00000007776LSM3100100.000ENSPTRG00000014650LSM394100.000Pan_troglodytes
ENSMGAG00000007776LSM3100100.000ENSPANG00000009378LSM394100.000Papio_anubis
ENSMGAG00000007776LSM310079.167ENSPANG00000032192-9479.167Papio_anubis
ENSMGAG00000007776LSM3100100.000ENSPKIG00000008037lsm386100.000Paramormyrops_kingsleyae
ENSMGAG00000007776LSM3100100.000ENSPSIG00000015720LSM394100.000Pelodiscus_sinensis
ENSMGAG00000007776LSM39994.737ENSPMGG00000012103lsm39694.737Periophthalmus_magnuspinnatus
ENSMGAG00000007776LSM310083.333ENSPEMG00000020213-9483.333Peromyscus_maniculatus_bairdii
ENSMGAG00000007776LSM3100100.000ENSPEMG00000015797Lsm394100.000Peromyscus_maniculatus_bairdii
ENSMGAG00000007776LSM310096.875ENSPFOG00000008372lsm39496.875Poecilia_formosa
ENSMGAG00000007776LSM310096.875ENSPLAG00000000563lsm39496.875Poecilia_latipinna
ENSMGAG00000007776LSM310096.875ENSPMEG00000022052lsm39496.875Poecilia_mexicana
ENSMGAG00000007776LSM310096.875ENSPREG00000022485lsm39496.875Poecilia_reticulata
ENSMGAG00000007776LSM3100100.000ENSPPYG00000013402LSM394100.000Pongo_abelii
ENSMGAG00000007776LSM3100100.000ENSPCAG00000017077LSM394100.000Procavia_capensis
ENSMGAG00000007776LSM39378.652ENSPCOG00000014435-8978.652Propithecus_coquereli
ENSMGAG00000007776LSM399100.000ENSPCOG00000016217-93100.000Propithecus_coquereli
ENSMGAG00000007776LSM3100100.000ENSPVAG00000016795LSM394100.000Pteropus_vampyrus
ENSMGAG00000007776LSM310096.875ENSPNYG00000009552lsm36996.875Pundamilia_nyererei
ENSMGAG00000007776LSM310098.958ENSPNAG00000023467lsm39498.958Pygocentrus_nattereri
ENSMGAG00000007776LSM3100100.000ENSRNOG00000008733Lsm394100.000Rattus_norvegicus
ENSMGAG00000007776LSM310082.292ENSRBIG00000043783-9382.292Rhinopithecus_bieti
ENSMGAG00000007776LSM3100100.000ENSRBIG00000034399LSM394100.000Rhinopithecus_bieti
ENSMGAG00000007776LSM310082.292ENSRROG00000044056-9482.292Rhinopithecus_roxellana
ENSMGAG00000007776LSM310083.333ENSRROG00000039868-9383.333Rhinopithecus_roxellana
ENSMGAG00000007776LSM310088.542ENSRROG00000044047-9488.542Rhinopithecus_roxellana
ENSMGAG00000007776LSM3100100.000ENSRROG00000033276-94100.000Rhinopithecus_roxellana
ENSMGAG00000007776LSM3100100.000ENSSBOG00000024310LSM394100.000Saimiri_boliviensis_boliviensis
ENSMGAG00000007776LSM310098.958ENSSFOG00015007071lsm39498.958Scleropages_formosus
ENSMGAG00000007776LSM310096.875ENSSMAG00000001818lsm39496.875Scophthalmus_maximus
ENSMGAG00000007776LSM310096.875ENSSDUG00000006040lsm39496.875Seriola_dumerili
ENSMGAG00000007776LSM310096.875ENSSLDG00000006399lsm39496.875Seriola_lalandi_dorsalis
ENSMGAG00000007776LSM360100.000ENSSARG00000005275-100100.000Sorex_araneus
ENSMGAG00000007776LSM310090.625ENSSPUG00000005394LSM39490.625Sphenodon_punctatus
ENSMGAG00000007776LSM399100.000ENSSPUG00000017047-99100.000Sphenodon_punctatus
ENSMGAG00000007776LSM310085.417ENSSPAG00000000934lsm39485.417Stegastes_partitus
ENSMGAG00000007776LSM3100100.000ENSSSCG00000011601LSM394100.000Sus_scrofa
ENSMGAG00000007776LSM39575.824ENSSSCG00000023718-9375.824Sus_scrofa
ENSMGAG00000007776LSM3100100.000ENSTGUG00000008327LSM394100.000Taeniopygia_guttata
ENSMGAG00000007776LSM310095.833ENSTRUG00000023175lsm39495.833Takifugu_rubripes
ENSMGAG00000007776LSM310095.833ENSTNIG00000005589lsm39495.833Tetraodon_nigroviridis
ENSMGAG00000007776LSM310089.583ENSTBEG00000001050-9389.583Tupaia_belangeri
ENSMGAG00000007776LSM3100100.000ENSTTRG00000011197LSM394100.000Tursiops_truncatus
ENSMGAG00000007776LSM3100100.000ENSUAMG00000017250-94100.000Ursus_americanus
ENSMGAG00000007776LSM3100100.000ENSUMAG00000015905LSM394100.000Ursus_maritimus
ENSMGAG00000007776LSM399100.000ENSVPAG00000010709LSM3100100.000Vicugna_pacos
ENSMGAG00000007776LSM310094.792ENSVVUG00000005684-9494.792Vulpes_vulpes
ENSMGAG00000007776LSM310096.875ENSVVUG00000007332-8696.875Vulpes_vulpes
ENSMGAG00000007776LSM310091.667ENSVVUG00000024228-9491.667Vulpes_vulpes
ENSMGAG00000007776LSM310094.792ENSVVUG00000006481-9494.792Vulpes_vulpes
ENSMGAG00000007776LSM310096.875ENSVVUG00000029294-9496.875Vulpes_vulpes
ENSMGAG00000007776LSM3100100.000ENSXETG00000011534lsm394100.000Xenopus_tropicalis
ENSMGAG00000007776LSM310096.875ENSXCOG00000017432LSM39496.875Xiphophorus_couchianus
ENSMGAG00000007776LSM310096.875ENSXMAG00000009151lsm39496.875Xiphophorus_maculatus

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