EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMGAG00000008437 (Gene tree)
Gene ID: -
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Meleagris_gallopavo
Status: putative
Strand: Plus strand
Length: 26684 bases
Position: chr10:15178862-15205545
Accession: 20193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMGAP00000008649	ResIII	PF04851.15	1.5e-13	1	1
ENSMGAP00000008649	DEAD	PF00270.29	8.6e-25	1	1
ENSMGAP00000008654	DEAD	PF00270.29	4.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMGAT00000009449	HFM1-201	2694	-	ENSMGAP00000008649	898 (aa)	-	G1N8K2
ENSMGAT00000009454	HFM1-202	2412	-	ENSMGAP00000008654	804 (aa)	-	G1N8K6

Gene Model

Click here to download ENSMGAG00000008437's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMGAG00000008437's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMGAG00000008437	HFM1	96	31.224	ENSMGAG00000001831	SNRNP200	70	31.224
ENSMGAG00000008437	HFM1	82	34.010	ENSMGAG00000013551	ASCC3	55	34.877

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMGAG00000008437	HFM1	98	77.423	ENSG00000162669	HFM1	99	37.671	Homo_sapiens
ENSMGAG00000008437	HFM1	95	64.453	ENSAPOG00000005304	hfm1	86	64.453	Acanthochromis_polyacanthus
ENSMGAG00000008437	HFM1	98	78.217	ENSAMEG00000000432	HFM1	54	78.217	Ailuropoda_melanoleuca
ENSMGAG00000008437	HFM1	93	68.449	ENSACIG00000021553	hfm1	69	68.449	Amphilophus_citrinellus
ENSMGAG00000008437	HFM1	93	68.575	ENSAOCG00000022839	hfm1	91	68.575	Amphiprion_ocellaris
ENSMGAG00000008437	HFM1	93	68.758	ENSAPEG00000014316	hfm1	91	68.758	Amphiprion_percula
ENSMGAG00000008437	HFM1	96	66.968	ENSATEG00000019181	hfm1	68	66.968	Anabas_testudineus
ENSMGAG00000008437	HFM1	97	90.689	ENSAPLG00000013639	HFM1	55	90.689	Anas_platyrhynchos
ENSMGAG00000008437	HFM1	96	76.645	ENSANAG00000029513	HFM1	55	76.645	Aotus_nancymaae
ENSMGAG00000008437	HFM1	95	67.192	ENSACLG00000009033	hfm1	88	64.398	Astatotilapia_calliptera
ENSMGAG00000008437	HFM1	97	68.199	ENSAMXG00000006108	hfm1	54	68.199	Astyanax_mexicanus
ENSMGAG00000008437	HFM1	98	77.551	ENSBTAG00000020856	HFM1	54	77.551	Bos_taurus
ENSMGAG00000008437	HFM1	98	76.913	ENSCJAG00000001843	HFM1	55	76.913	Callithrix_jacchus
ENSMGAG00000008437	HFM1	98	78.571	ENSCAFG00000020187	HFM1	54	78.571	Canis_familiaris
ENSMGAG00000008437	HFM1	53	52.869	ENSCAFG00020013595	-	100	52.869	Canis_lupus_dingo
ENSMGAG00000008437	HFM1	98	76.815	ENSTSYG00000014250	HFM1	55	76.815	Carlito_syrichta
ENSMGAG00000008437	HFM1	97	76.569	ENSCPOG00000007421	HFM1	56	76.569	Cavia_porcellus
ENSMGAG00000008437	HFM1	98	76.913	ENSCCAG00000033206	HFM1	55	76.913	Cebus_capucinus
ENSMGAG00000008437	HFM1	98	77.806	ENSCATG00000030987	HFM1	54	77.806	Cercocebus_atys
ENSMGAG00000008437	HFM1	98	77.296	ENSCLAG00000005173	HFM1	53	77.296	Chinchilla_lanigera
ENSMGAG00000008437	HFM1	81	54.641	ENSCSAVG00000005094	-	92	54.641	Ciona_savignyi
ENSMGAG00000008437	HFM1	53	53.027	ENSCANG00000034052	-	99	53.027	Colobus_angolensis_palliatus
ENSMGAG00000008437	HFM1	96	72.797	ENSCGRG00001016995	Hfm1	55	72.797	Cricetulus_griseus_chok1gshd
ENSMGAG00000008437	HFM1	96	75.323	ENSCGRG00000017181	Hfm1	54	75.323	Cricetulus_griseus_crigri
ENSMGAG00000008437	HFM1	96	65.670	ENSCSEG00000017659	hfm1	71	65.670	Cynoglossus_semilaevis
ENSMGAG00000008437	HFM1	89	68.671	ENSCVAG00000005075	hfm1	86	68.671	Cyprinodon_variegatus
ENSMGAG00000008437	HFM1	95	66.667	ENSDARG00000104288	hfm1	69	66.667	Danio_rerio
ENSMGAG00000008437	HFM1	98	77.041	ENSDNOG00000004776	HFM1	53	77.041	Dasypus_novemcinctus
ENSMGAG00000008437	HFM1	99	76.101	ENSDORG00000014661	Hfm1	55	76.101	Dipodomys_ordii
ENSMGAG00000008437	HFM1	93	79.518	ENSEASG00005015424	HFM1	75	79.518	Equus_asinus_asinus
ENSMGAG00000008437	HFM1	98	78.061	ENSECAG00000024039	HFM1	53	78.061	Equus_caballus
ENSMGAG00000008437	HFM1	96	67.917	ENSELUG00000018944	hfm1	83	67.917	Esox_lucius
ENSMGAG00000008437	HFM1	98	78.217	ENSFCAG00000029116	HFM1	54	78.217	Felis_catus
ENSMGAG00000008437	HFM1	97	88.790	ENSFALG00000001781	HFM1	55	88.790	Ficedula_albicollis
ENSMGAG00000008437	HFM1	98	77.296	ENSFDAG00000020816	HFM1	53	77.296	Fukomys_damarensis
ENSMGAG00000008437	HFM1	96	62.710	ENSGMOG00000017436	hfm1	80	62.710	Gadus_morhua
ENSMGAG00000008437	HFM1	94	68.063	ENSGAFG00000018093	hfm1	83	65.688	Gambusia_affinis
ENSMGAG00000008437	HFM1	96	63.437	ENSGACG00000015686	hfm1	79	63.437	Gasterosteus_aculeatus
ENSMGAG00000008437	HFM1	98	77.423	ENSGGOG00000038524	HFM1	54	77.423	Gorilla_gorilla
ENSMGAG00000008437	HFM1	95	68.504	ENSHBUG00000007309	hfm1	72	68.504	Haplochromis_burtoni
ENSMGAG00000008437	HFM1	53	50.932	ENSHGLG00000007780	-	100	50.932	Heterocephalus_glaber_female
ENSMGAG00000008437	HFM1	53	50.617	ENSHGLG00100019217	-	100	50.617	Heterocephalus_glaber_male
ENSMGAG00000008437	HFM1	94	63.228	ENSHCOG00000019632	hfm1	89	63.228	Hippocampus_comes
ENSMGAG00000008437	HFM1	96	67.358	ENSIPUG00000017020	hfm1	84	63.871	Ictalurus_punctatus
ENSMGAG00000008437	HFM1	52	51.992	ENSSTOG00000008477	-	99	51.992	Ictidomys_tridecemlineatus
ENSMGAG00000008437	HFM1	98	76.148	ENSJJAG00000017198	Hfm1	56	76.148	Jaculus_jaculus
ENSMGAG00000008437	HFM1	94	65.879	ENSKMAG00000002282	hfm1	79	64.987	Kryptolebias_marmoratus
ENSMGAG00000008437	HFM1	95	64.759	ENSLBEG00000006759	hfm1	87	63.708	Labrus_bergylta
ENSMGAG00000008437	HFM1	97	71.555	ENSLACG00000010698	HFM1	74	71.827	Latimeria_chalumnae
ENSMGAG00000008437	HFM1	95	70.611	ENSLOCG00000004931	hfm1	71	70.611	Lepisosteus_oculatus
ENSMGAG00000008437	HFM1	75	79.967	ENSLAFG00000015903	-	93	75.396	Loxodonta_africana
ENSMGAG00000008437	HFM1	98	73.698	ENSMFAG00000003649	HFM1	54	73.698	Macaca_fascicularis
ENSMGAG00000008437	HFM1	98	77.296	ENSMMUG00000006819	HFM1	54	77.296	Macaca_mulatta
ENSMGAG00000008437	HFM1	53	53.002	ENSMNEG00000039833	-	99	53.002	Macaca_nemestrina
ENSMGAG00000008437	HFM1	53	53.333	ENSMLEG00000027571	-	99	53.333	Mandrillus_leucophaeus
ENSMGAG00000008437	HFM1	95	65.319	ENSMAMG00000004623	hfm1	90	65.319	Mastacembelus_armatus
ENSMGAG00000008437	HFM1	95	67.192	ENSMZEG00005004679	hfm1	88	64.398	Maylandia_zebra
ENSMGAG00000008437	HFM1	96	76.425	ENSMAUG00000018858	Hfm1	54	76.425	Mesocricetus_auratus
ENSMGAG00000008437	HFM1	98	76.943	ENSMICG00000037935	HFM1	54	76.943	Microcebus_murinus
ENSMGAG00000008437	HFM1	96	76.166	ENSMOCG00000014812	Hfm1	54	76.166	Microtus_ochrogaster
ENSMGAG00000008437	HFM1	93	66.222	ENSMMOG00000006148	hfm1	85	63.708	Mola_mola
ENSMGAG00000008437	HFM1	93	69.826	ENSMALG00000002401	hfm1	86	65.971	Monopterus_albus
ENSMGAG00000008437	HFM1	88	80.328	MGP_CAROLIEiJ_G0027496	Hfm1	96	45.823	Mus_caroli
ENSMGAG00000008437	HFM1	96	76.744	ENSMUSG00000043410	Hfm1	100	47.765	Mus_musculus
ENSMGAG00000008437	HFM1	96	77.261	MGP_PahariEiJ_G0017268	Hfm1	100	48.478	Mus_pahari
ENSMGAG00000008437	HFM1	97	76.373	MGP_SPRETEiJ_G0028495	Hfm1	100	48.000	Mus_spretus
ENSMGAG00000008437	HFM1	98	78.217	ENSMPUG00000004594	HFM1	53	78.217	Mustela_putorius_furo
ENSMGAG00000008437	HFM1	96	77.907	ENSMLUG00000010200	HFM1	54	77.907	Myotis_lucifugus
ENSMGAG00000008437	HFM1	95	64.136	ENSNBRG00000002910	hfm1	89	64.136	Neolamprologus_brichardi
ENSMGAG00000008437	HFM1	98	74.490	ENSNLEG00000010285	HFM1	54	74.490	Nomascus_leucogenys
ENSMGAG00000008437	HFM1	87	72.353	ENSMEUG00000015788	HFM1	52	63.688	Notamacropus_eugenii
ENSMGAG00000008437	HFM1	96	69.935	ENSOPRG00000013916	HFM1	54	69.935	Ochotona_princeps
ENSMGAG00000008437	HFM1	53	52.391	ENSODEG00000006243	-	100	52.391	Octodon_degus
ENSMGAG00000008437	HFM1	96	67.613	ENSONIG00000010590	hfm1	74	67.613	Oreochromis_niloticus
ENSMGAG00000008437	HFM1	93	62.948	ENSORLG00000026844	hfm1	92	62.948	Oryzias_latipes
ENSMGAG00000008437	HFM1	89	66.917	ENSORLG00020002951	hfm1	60	66.917	Oryzias_latipes_hni
ENSMGAG00000008437	HFM1	95	65.800	ENSOMEG00000016474	hfm1	53	65.800	Oryzias_melastigma
ENSMGAG00000008437	HFM1	96	77.490	ENSOGAG00000032369	HFM1	63	77.490	Otolemur_garnettii
ENSMGAG00000008437	HFM1	98	77.551	ENSOARG00000015812	HFM1	54	77.551	Ovis_aries
ENSMGAG00000008437	HFM1	98	77.679	ENSPPAG00000024582	HFM1	59	77.679	Pan_paniscus
ENSMGAG00000008437	HFM1	98	78.344	ENSPPRG00000003270	HFM1	54	78.344	Panthera_pardus
ENSMGAG00000008437	HFM1	98	78.217	ENSPTIG00000018881	HFM1	54	78.217	Panthera_tigris_altaica
ENSMGAG00000008437	HFM1	98	77.679	ENSPTRG00000000948	HFM1	54	77.679	Pan_troglodytes
ENSMGAG00000008437	HFM1	98	77.423	ENSPANG00000009838	HFM1	54	77.423	Papio_anubis
ENSMGAG00000008437	HFM1	96	68.264	ENSPKIG00000003810	hfm1	87	66.446	Paramormyrops_kingsleyae
ENSMGAG00000008437	HFM1	94	64.389	ENSPMGG00000011059	hfm1	92	64.389	Periophthalmus_magnuspinnatus
ENSMGAG00000008437	HFM1	96	77.073	ENSPEMG00000022852	Hfm1	54	77.073	Peromyscus_maniculatus_bairdii
ENSMGAG00000008437	HFM1	96	77.677	ENSPCIG00000014233	HFM1	52	77.677	Phascolarctos_cinereus
ENSMGAG00000008437	HFM1	95	68.504	ENSPFOG00000017194	hfm1	72	68.504	Poecilia_formosa
ENSMGAG00000008437	HFM1	95	68.898	ENSPLAG00000000571	hfm1	69	68.898	Poecilia_latipinna
ENSMGAG00000008437	HFM1	95	68.635	ENSPMEG00000019475	hfm1	70	68.635	Poecilia_mexicana
ENSMGAG00000008437	HFM1	95	67.717	ENSPREG00000007803	hfm1	84	64.807	Poecilia_reticulata
ENSMGAG00000008437	HFM1	98	77.423	ENSPPYG00000001163	HFM1	54	77.423	Pongo_abelii
ENSMGAG00000008437	HFM1	53	39.752	ENSPCOG00000026252	-	100	40.166	Propithecus_coquereli
ENSMGAG00000008437	HFM1	98	71.046	ENSPVAG00000009713	HFM1	56	71.046	Pteropus_vampyrus
ENSMGAG00000008437	HFM1	95	67.060	ENSPNYG00000001795	hfm1	88	64.398	Pundamilia_nyererei
ENSMGAG00000008437	HFM1	96	65.888	ENSPNAG00000010865	hfm1	76	65.888	Pygocentrus_nattereri
ENSMGAG00000008437	HFM1	96	76.615	ENSRNOG00000023299	Hfm1	54	76.615	Rattus_norvegicus
ENSMGAG00000008437	HFM1	53	52.818	ENSRBIG00000033899	-	99	52.818	Rhinopithecus_bieti
ENSMGAG00000008437	HFM1	98	77.423	ENSRROG00000045569	HFM1	54	77.423	Rhinopithecus_roxellana
ENSMGAG00000008437	HFM1	98	76.913	ENSSBOG00000027456	HFM1	56	76.913	Saimiri_boliviensis_boliviensis
ENSMGAG00000008437	HFM1	96	62.874	ENSSHAG00000014616	-	98	62.874	Sarcophilus_harrisii
ENSMGAG00000008437	HFM1	97	67.821	ENSSFOG00015020129	hfm1	52	67.821	Scleropages_formosus
ENSMGAG00000008437	HFM1	96	67.097	ENSSMAG00000006907	hfm1	76	67.097	Scophthalmus_maximus
ENSMGAG00000008437	HFM1	95	65.274	ENSSDUG00000011424	hfm1	86	65.274	Seriola_dumerili
ENSMGAG00000008437	HFM1	95	65.319	ENSSLDG00000016386	hfm1	85	65.319	Seriola_lalandi_dorsalis
ENSMGAG00000008437	HFM1	95	65.405	ENSSPAG00000001023	hfm1	86	65.405	Stegastes_partitus
ENSMGAG00000008437	HFM1	97	77.849	ENSSSCG00000006912	HFM1	57	77.849	Sus_scrofa
ENSMGAG00000008437	HFM1	97	88.662	ENSTGUG00000006172	HFM1	82	88.662	Taeniopygia_guttata
ENSMGAG00000008437	HFM1	52	66.809	ENSTNIG00000006962	hfm1	96	66.809	Tetraodon_nigroviridis
ENSMGAG00000008437	HFM1	96	77.261	ENSTTRG00000013933	HFM1	55	77.261	Tursiops_truncatus
ENSMGAG00000008437	HFM1	51	44.050	ENSUAMG00000008754	-	97	44.050	Ursus_americanus
ENSMGAG00000008437	HFM1	53	52.254	ENSUMAG00000001345	-	100	52.254	Ursus_maritimus
ENSMGAG00000008437	HFM1	98	74.490	ENSVPAG00000011331	HFM1	54	74.490	Vicugna_pacos
ENSMGAG00000008437	HFM1	93	80.054	ENSVVUG00000020760	HFM1	74	80.054	Vulpes_vulpes
ENSMGAG00000008437	HFM1	93	65.604	ENSXMAG00000004178	hfm1	83	65.604	Xiphophorus_maculatus