EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSMGAG00000010552 (Gene tree)
Gene ID
-
Gene Symbol
CPSF6
Alias
CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7
Full Name
cleavage and polyadenylation specific factor 6
Gene Type
protein_coding
Species
Meleagris_gallopavo
Status
putative
Strand
Plus strand
Length
17054 bases
Position
chr1:37145560-37162613
Accession
13871
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMGAP00000010961RRM_1PF00076.224.7e-0711
ENSMGAP00000010962RRM_1PF00076.224.7e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMGAT00000011830CPSF6-2021702-ENSMGAP00000010962531 (aa)-G1NDM2
ENSMGAT00000011829CPSF6-2011602-ENSMGAP00000010961533 (aa)-G1NDM1
Gene Model
Click here to download ENSMGAG00000010552's gene model file
Pathways
Pathway IDPathway NameSource
mgp03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMGAG00000010552's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMGAG00000010552CPSF69993.028ENSG00000111605CPSF69993.028Homo_sapiens
ENSMGAG00000010552CPSF69538.447ENSG00000149532CPSF79557.471Homo_sapiens
ENSMGAG00000010552CPSF610092.683ENSAMEG00000011781CPSF69692.683Ailuropoda_melanoleuca
ENSMGAG00000010552CPSF66438.806ENSAOCG00000012357CPSF77942.593Amphiprion_ocellaris
ENSMGAG00000010552CPSF66438.806ENSAPEG00000015375CPSF77941.975Amphiprion_percula
ENSMGAG00000010552CPSF65097.348ENSACAG00000004381CPSF69993.446Anolis_carolinensis
ENSMGAG00000010552CPSF69436.832ENSANAG00000024635CPSF77254.639Aotus_nancymaae
ENSMGAG00000010552CPSF69893.889ENSANAG00000019240CPSF610093.889Aotus_nancymaae
ENSMGAG00000010552CPSF66390.419ENSAMXG00000016745CPSF67390.303Astyanax_mexicanus
ENSMGAG00000010552CPSF69993.028ENSBTAG00000007323CPSF69993.028Bos_taurus
ENSMGAG00000010552CPSF69239.208ENSBTAG00000015263CPSF76756.000Bos_taurus
ENSMGAG00000010552CPSF69993.028ENSCJAG00000001798CPSF69993.028Callithrix_jacchus
ENSMGAG00000010552CPSF69538.068ENSCJAG00000019282CPSF77957.714Callithrix_jacchus
ENSMGAG00000010552CPSF69239.208ENSCAFG00000016152CPSF76756.571Canis_familiaris
ENSMGAG00000010552CPSF610093.045ENSCAFG00000000424CPSF69894.259Canis_familiaris
ENSMGAG00000010552CPSF69239.208ENSCAFG00020012753CPSF76756.571Canis_lupus_dingo
ENSMGAG00000010552CPSF69993.028ENSCAFG00020016950CPSF69993.028Canis_lupus_dingo
ENSMGAG00000010552CPSF69993.028ENSCHIG00000010792CPSF69993.028Capra_hircus
ENSMGAG00000010552CPSF69239.208ENSCHIG00000014655CPSF76756.000Capra_hircus
ENSMGAG00000010552CPSF69239.208ENSTSYG00000010138-6756.571Carlito_syrichta
ENSMGAG00000010552CPSF69795.113ENSTSYG00000008591CPSF69695.113Carlito_syrichta
ENSMGAG00000010552CPSF69239.208ENSCAPG00000006384CPSF77056.571Cavia_aperea
ENSMGAG00000010552CPSF69239.208ENSCPOG00000009980CPSF76756.571Cavia_porcellus
ENSMGAG00000010552CPSF69992.844ENSCPOG00000015201CPSF69992.844Cavia_porcellus
ENSMGAG00000010552CPSF69538.068ENSCCAG00000032367CPSF76756.000Cebus_capucinus
ENSMGAG00000010552CPSF69993.028ENSCCAG00000028149CPSF69993.028Cebus_capucinus
ENSMGAG00000010552CPSF69993.028ENSCATG00000039288CPSF69993.028Cercocebus_atys
ENSMGAG00000010552CPSF69538.447ENSCATG00000042801CPSF77656.000Cercocebus_atys
ENSMGAG00000010552CPSF69239.208ENSCLAG00000003174CPSF76756.000Chinchilla_lanigera
ENSMGAG00000010552CPSF69993.542ENSCLAG00000010149CPSF610094.925Chinchilla_lanigera
ENSMGAG00000010552CPSF69238.812ENSCSAG00000006414CPSF77656.000Chlorocebus_sabaeus
ENSMGAG00000010552CPSF610096.422ENSCPBG00000013322CPSF69994.128Chrysemys_picta_bellii
ENSMGAG00000010552CPSF65559.441ENSCSAVG00000000161-5563.158Ciona_savignyi
ENSMGAG00000010552CPSF69795.113ENSCANG00000037294CPSF610095.113Colobus_angolensis_palliatus
ENSMGAG00000010552CPSF69993.394ENSCGRG00001018082Cpsf610093.394Cricetulus_griseus_chok1gshd
ENSMGAG00000010552CPSF69239.645ENSCGRG00001020382Cpsf76758.286Cricetulus_griseus_chok1gshd
ENSMGAG00000010552CPSF68654.839ENSCGRG00000017954Cpsf77760.000Cricetulus_griseus_crigri
ENSMGAG00000010552CPSF69993.394ENSCGRG00000016909Cpsf610095.301Cricetulus_griseus_crigri
ENSMGAG00000010552CPSF66091.515ENSCSEG00000008967cpsf65174.377Cynoglossus_semilaevis
ENSMGAG00000010552CPSF67330.334ENSCSEG00000001956CPSF75747.552Cynoglossus_semilaevis
ENSMGAG00000010552CPSF66078.571ENSCVAG00000014857cpsf65171.530Cyprinodon_variegatus
ENSMGAG00000010552CPSF68035.426ENSCVAG00000007392CPSF75245.745Cyprinodon_variegatus
ENSMGAG00000010552CPSF65276.000ENSDARG00000018618cpsf65175.986Danio_rerio
ENSMGAG00000010552CPSF69239.208ENSDNOG00000018517CPSF77958.286Dasypus_novemcinctus
ENSMGAG00000010552CPSF69992.844ENSDNOG00000015292CPSF69992.844Dasypus_novemcinctus
ENSMGAG00000010552CPSF69993.761ENSDORG00000002950Cpsf610093.761Dipodomys_ordii
ENSMGAG00000010552CPSF69546.117ENSETEG00000003765CPSF76756.725Echinops_telfairi
ENSMGAG00000010552CPSF69993.028ENSEASG00005008066CPSF69993.028Equus_asinus_asinus
ENSMGAG00000010552CPSF69239.208ENSEASG00005008196CPSF76756.571Equus_asinus_asinus
ENSMGAG00000010552CPSF69993.028ENSECAG00000015988CPSF69993.028Equus_caballus
ENSMGAG00000010552CPSF67553.297ENSECAG00000018521CPSF79058.286Equus_caballus
ENSMGAG00000010552CPSF65062.069ENSEEUG00000005966-6661.017Erinaceus_europaeus
ENSMGAG00000010552CPSF69992.844ENSFCAG00000002855CPSF69992.844Felis_catus
ENSMGAG00000010552CPSF69239.208ENSFCAG00000013677CPSF79058.286Felis_catus
ENSMGAG00000010552CPSF610096.805ENSFALG00000010157CPSF69996.992Ficedula_albicollis
ENSMGAG00000010552CPSF67555.914ENSFALG00000011927CPSF77157.558Ficedula_albicollis
ENSMGAG00000010552CPSF69539.615ENSFDAG00000003919CPSF76759.429Fukomys_damarensis
ENSMGAG00000010552CPSF69987.113ENSFDAG00000002281CPSF69987.113Fukomys_damarensis
ENSMGAG00000010552CPSF65074.113ENSFHEG00000019693cpsf65367.961Fundulus_heteroclitus
ENSMGAG00000010552CPSF65491.736ENSGMOG00000012951cpsf65293.388Gadus_morhua
ENSMGAG00000010552CPSF66154.749ENSGALG00000040962CPSF75958.382Gallus_gallus
ENSMGAG00000010552CPSF610096.422ENSGAGG00000010228CPSF69994.128Gopherus_agassizii
ENSMGAG00000010552CPSF69993.211ENSGGOG00000008211CPSF69993.211Gorilla_gorilla
ENSMGAG00000010552CPSF67556.410ENSHGLG00000019090-7656.571Heterocephalus_glaber_female
ENSMGAG00000010552CPSF69992.844ENSHGLG00000000792CPSF69992.844Heterocephalus_glaber_female
ENSMGAG00000010552CPSF69794.925ENSHGLG00100013861CPSF610094.925Heterocephalus_glaber_male
ENSMGAG00000010552CPSF68256.410ENSHGLG00100013933-7759.429Heterocephalus_glaber_male
ENSMGAG00000010552CPSF69239.208ENSSTOG00000007708CPSF76756.571Ictidomys_tridecemlineatus
ENSMGAG00000010552CPSF69795.113ENSSTOG00000014133CPSF610095.113Ictidomys_tridecemlineatus
ENSMGAG00000010552CPSF67655.897ENSJJAG00000019390Cpsf77756.571Jaculus_jaculus
ENSMGAG00000010552CPSF69795.301ENSJJAG00000014647Cpsf69995.301Jaculus_jaculus
ENSMGAG00000010552CPSF65540.541ENSLBEG00000000947CPSF77450.000Labrus_bergylta
ENSMGAG00000010552CPSF66544.872ENSLACG00000005542CPSF76944.872Latimeria_chalumnae
ENSMGAG00000010552CPSF66895.294ENSLOCG00000016190cpsf66595.294Lepisosteus_oculatus
ENSMGAG00000010552CPSF69239.208ENSLAFG00000032084CPSF76756.571Loxodonta_africana
ENSMGAG00000010552CPSF69993.028ENSLAFG00000030413CPSF69993.028Loxodonta_africana
ENSMGAG00000010552CPSF69993.028ENSMFAG00000045318CPSF69993.028Macaca_fascicularis
ENSMGAG00000010552CPSF69538.447ENSMFAG00000001401CPSF76856.000Macaca_fascicularis
ENSMGAG00000010552CPSF69538.447ENSMMUG00000015280CPSF77656.000Macaca_mulatta
ENSMGAG00000010552CPSF69993.211ENSMMUG00000002921CPSF69993.211Macaca_mulatta
ENSMGAG00000010552CPSF69993.028ENSMNEG00000036311CPSF69993.028Macaca_nemestrina
ENSMGAG00000010552CPSF67655.385ENSMNEG00000029585CPSF77656.000Macaca_nemestrina
ENSMGAG00000010552CPSF69795.113ENSMLEG00000003957CPSF610095.113Mandrillus_leucophaeus
ENSMGAG00000010552CPSF67655.385ENSMLEG00000031269CPSF76856.000Mandrillus_leucophaeus
ENSMGAG00000010552CPSF69239.053ENSMAUG00000013020Cpsf76756.571Mesocricetus_auratus
ENSMGAG00000010552CPSF69993.028ENSMAUG00000013240Cpsf69993.028Mesocricetus_auratus
ENSMGAG00000010552CPSF69239.208ENSMICG00000013788CPSF76756.571Microcebus_murinus
ENSMGAG00000010552CPSF69993.211ENSMICG00000007385-9993.211Microcebus_murinus
ENSMGAG00000010552CPSF69993.211ENSMOCG00000013982Cpsf69993.211Microtus_ochrogaster
ENSMGAG00000010552CPSF69239.448ENSMOCG00000000072Cpsf76756.571Microtus_ochrogaster
ENSMGAG00000010552CPSF69993.211ENSMODG00000007123CPSF69993.211Monodelphis_domestica
ENSMGAG00000010552CPSF66352.284ENSMODG00000020364CPSF76856.250Monodelphis_domestica
ENSMGAG00000010552CPSF67689.175ENSMALG00000014908cpsf67789.326Monopterus_albus
ENSMGAG00000010552CPSF69239.053MGP_CAROLIEiJ_G0022690Cpsf76756.571Mus_caroli
ENSMGAG00000010552CPSF69993.211MGP_CAROLIEiJ_G0015834Cpsf69993.211Mus_caroli
ENSMGAG00000010552CPSF69992.844ENSMUSG00000055531Cpsf69992.844Mus_musculus
ENSMGAG00000010552CPSF69239.053ENSMUSG00000034820Cpsf76756.571Mus_musculus
ENSMGAG00000010552CPSF69239.053MGP_PahariEiJ_G0014184Cpsf76756.571Mus_pahari
ENSMGAG00000010552CPSF68497.727MGP_PahariEiJ_G0031253Cpsf68691.494Mus_pahari
ENSMGAG00000010552CPSF69992.844MGP_SPRETEiJ_G0016657Cpsf69992.844Mus_spretus
ENSMGAG00000010552CPSF69239.053MGP_SPRETEiJ_G0023604Cpsf76756.571Mus_spretus
ENSMGAG00000010552CPSF69238.812ENSMPUG00000014163CPSF76655.429Mustela_putorius_furo
ENSMGAG00000010552CPSF610093.045ENSMPUG00000017502CPSF69793.045Mustela_putorius_furo
ENSMGAG00000010552CPSF69239.010ENSMLUG00000013278CPSF77656.571Myotis_lucifugus
ENSMGAG00000010552CPSF66694.203ENSMLUG00000028728-8892.857Myotis_lucifugus
ENSMGAG00000010552CPSF610093.045ENSMLUG00000004172-9793.045Myotis_lucifugus
ENSMGAG00000010552CPSF67979.048ENSMLUG00000023960-6781.122Myotis_lucifugus
ENSMGAG00000010552CPSF69239.053ENSNGAG00000005031Cpsf76756.571Nannospalax_galili
ENSMGAG00000010552CPSF69993.211ENSNGAG00000015901Cpsf69993.211Nannospalax_galili
ENSMGAG00000010552CPSF69993.028ENSNLEG00000003798CPSF69993.028Nomascus_leucogenys
ENSMGAG00000010552CPSF69538.447ENSNLEG00000002529CPSF76156.000Nomascus_leucogenys
ENSMGAG00000010552CPSF66354.688ENSMEUG00000002261CPSF76756.395Notamacropus_eugenii
ENSMGAG00000010552CPSF69788.752ENSOPRG00000005199CPSF610088.752Ochotona_princeps
ENSMGAG00000010552CPSF67396.939ENSODEG00000004418-8594.915Octodon_degus
ENSMGAG00000010552CPSF65096.970ENSODEG00000018399-5192.832Octodon_degus
ENSMGAG00000010552CPSF69238.780ENSODEG00000002610CPSF76959.259Octodon_degus
ENSMGAG00000010552CPSF67880.916ENSODEG00000007109-6679.137Octodon_degus
ENSMGAG00000010552CPSF69477.645ENSOANG00000005944CPSF65087.218Ornithorhynchus_anatinus
ENSMGAG00000010552CPSF69939.927ENSOCUG00000024726CPSF76758.857Oryctolagus_cuniculus
ENSMGAG00000010552CPSF67535.931ENSORLG00000006495CPSF75549.558Oryzias_latipes
ENSMGAG00000010552CPSF67436.087ENSORLG00020012657CPSF75549.558Oryzias_latipes_hni
ENSMGAG00000010552CPSF67836.797ENSOMEG00000000539CPSF76037.267Oryzias_melastigma
ENSMGAG00000010552CPSF610092.857ENSOGAG00000031988CPSF69992.857Otolemur_garnettii
ENSMGAG00000010552CPSF69239.604ENSOGAG00000027958CPSF76256.571Otolemur_garnettii
ENSMGAG00000010552CPSF66355.897ENSOARG00000012937CPSF76158.857Ovis_aries
ENSMGAG00000010552CPSF69789.104ENSOARG00000020532CPSF610088.268Ovis_aries
ENSMGAG00000010552CPSF69239.010ENSPPAG00000028232CPSF76956.000Pan_paniscus
ENSMGAG00000010552CPSF69238.703ENSPPRG00000008538CPSF76759.429Panthera_pardus
ENSMGAG00000010552CPSF69992.844ENSPPRG00000021620CPSF69992.844Panthera_pardus
ENSMGAG00000010552CPSF69239.208ENSPTIG00000021699CPSF76756.571Panthera_tigris_altaica
ENSMGAG00000010552CPSF69194.600ENSPTIG00000004079CPSF610094.600Panthera_tigris_altaica
ENSMGAG00000010552CPSF69239.010ENSPTRG00000003742CPSF76956.000Pan_troglodytes
ENSMGAG00000010552CPSF69993.211ENSPTRG00000005205CPSF69993.211Pan_troglodytes
ENSMGAG00000010552CPSF69993.028ENSPANG00000011641CPSF69993.028Papio_anubis
ENSMGAG00000010552CPSF69538.447ENSPANG00000006037CPSF76856.000Papio_anubis
ENSMGAG00000010552CPSF66048.588ENSPKIG00000018054CPSF77645.213Paramormyrops_kingsleyae
ENSMGAG00000010552CPSF69795.113ENSPEMG00000007973Cpsf610095.113Peromyscus_maniculatus_bairdii
ENSMGAG00000010552CPSF67655.897ENSPEMG00000012648Cpsf77756.571Peromyscus_maniculatus_bairdii
ENSMGAG00000010552CPSF69993.211ENSPCIG00000019063CPSF69993.211Phascolarctos_cinereus
ENSMGAG00000010552CPSF66352.792ENSPCIG00000002551CPSF77956.284Phascolarctos_cinereus
ENSMGAG00000010552CPSF66584.916ENSPLAG00000005715cpsf65174.733Poecilia_latipinna
ENSMGAG00000010552CPSF65077.612ENSPMEG00000001353cpsf65174.733Poecilia_mexicana
ENSMGAG00000010552CPSF65077.612ENSPREG00000004417cpsf65274.733Poecilia_reticulata
ENSMGAG00000010552CPSF69239.010ENSPPYG00000003188CPSF76756.000Pongo_abelii
ENSMGAG00000010552CPSF69992.844ENSPPYG00000004756CPSF69992.844Pongo_abelii
ENSMGAG00000010552CPSF69993.028ENSPCOG00000024384CPSF69993.028Propithecus_coquereli
ENSMGAG00000010552CPSF69239.208ENSPCOG00000011976CPSF76756.571Propithecus_coquereli
ENSMGAG00000010552CPSF69239.010ENSPVAG00000010675CPSF76756.571Pteropus_vampyrus
ENSMGAG00000010552CPSF65274.729ENSPNAG00000024098CPSF65174.733Pygocentrus_nattereri
ENSMGAG00000010552CPSF66840.359ENSPNAG00000015073CPSF76847.879Pygocentrus_nattereri
ENSMGAG00000010552CPSF69992.844ENSRNOG00000005927Cpsf69992.844Rattus_norvegicus
ENSMGAG00000010552CPSF68655.385ENSRNOG00000020668Cpsf77756.395Rattus_norvegicus
ENSMGAG00000010552CPSF69993.028ENSRBIG00000042827CPSF69993.028Rhinopithecus_bieti
ENSMGAG00000010552CPSF69239.406ENSRBIG00000031429CPSF79057.714Rhinopithecus_bieti
ENSMGAG00000010552CPSF69239.406ENSRROG00000045009CPSF76756.000Rhinopithecus_roxellana
ENSMGAG00000010552CPSF69992.844ENSRROG00000042758CPSF69992.844Rhinopithecus_roxellana
ENSMGAG00000010552CPSF69888.656ENSSBOG00000010652CPSF610094.800Saimiri_boliviensis_boliviensis
ENSMGAG00000010552CPSF69239.010ENSSBOG00000018431CPSF76756.000Saimiri_boliviensis_boliviensis
ENSMGAG00000010552CPSF66354.872ENSSHAG00000011964CPSF76756.395Sarcophilus_harrisii
ENSMGAG00000010552CPSF69843.056ENSSFOG00015010288cpsf77340.659Scleropages_formosus
ENSMGAG00000010552CPSF68596.939ENSSARG00000006743CPSF67696.939Sorex_araneus
ENSMGAG00000010552CPSF66356.250ENSSPUG00000019344CPSF76956.977Sphenodon_punctatus
ENSMGAG00000010552CPSF69490.772ENSSPUG00000001238CPSF69989.236Sphenodon_punctatus
ENSMGAG00000010552CPSF69239.208ENSSSCG00000013083CPSF77958.286Sus_scrofa
ENSMGAG00000010552CPSF69993.028ENSSSCG00000038031CPSF69993.028Sus_scrofa
ENSMGAG00000010552CPSF66053.889ENSTGUG00000006513CPSF76755.747Taeniopygia_guttata
ENSMGAG00000010552CPSF67551.795ENSTTRG00000011085CPSF77056.571Tursiops_truncatus
ENSMGAG00000010552CPSF69194.800ENSUAMG00000023492CPSF610094.800Ursus_americanus
ENSMGAG00000010552CPSF69239.208ENSUAMG00000017809CPSF76756.571Ursus_americanus
ENSMGAG00000010552CPSF69194.800ENSUMAG00000020779CPSF610094.800Ursus_maritimus
ENSMGAG00000010552CPSF69239.010ENSUMAG00000011825CPSF77656.571Ursus_maritimus
ENSMGAG00000010552CPSF69538.258ENSVVUG00000004939CPSF77958.286Vulpes_vulpes
ENSMGAG00000010552CPSF65077.612ENSXCOG00000013423cpsf65174.733Xiphophorus_couchianus

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