EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMGAG00000012117 (Gene tree)
Gene ID
100550547
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Meleagris_gallopavo
Status
putative
Strand
Plus strand
Length
3777 bases
Position
chr6:49140612-49144388
Accession
100550547
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMGAP00000012725LSMPF01423.221.4e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMGAT00000013622LSM5-201521-ENSMGAP0000001272591 (aa)XP_003207351G1NHQ2
Gene Model
Click here to download ENSMGAG00000012117's gene model file
Pathways
Pathway IDPathway NameSource
mgp03018RNA degradationKEGG
mgp03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMGAG00000012117's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMGAG00000012117LSM58234.667ENSMGAG00000007776LSM37834.667
ENSMGAG00000012117LSM56536.066ENSMGAG00000002674-8036.066
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMGAG00000012117LSM510098.901ENSG00000106355LSM5100100.000Homo_sapiens
ENSMGAG00000012117LSM510094.505ENSAPOG00000020779LSM510094.505Acanthochromis_polyacanthus
ENSMGAG00000012117LSM59093.902ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSMGAG00000012117LSM510098.901ENSAMEG00000006700LSM510098.901Ailuropoda_melanoleuca
ENSMGAG00000012117LSM59658.621ENSACIG00000019185lsm59858.621Amphilophus_citrinellus
ENSMGAG00000012117LSM510094.505ENSAOCG00000001636lsm510094.505Amphiprion_ocellaris
ENSMGAG00000012117LSM56896.774ENSAPEG00000008201lsm510096.774Amphiprion_percula
ENSMGAG00000012117LSM510094.505ENSAPEG00000008151lsm510094.505Amphiprion_percula
ENSMGAG00000012117LSM59093.902ENSATEG00000020470lsm510059.341Anabas_testudineus
ENSMGAG00000012117LSM581100.000ENSAPLG00000008171LSM5100100.000Anas_platyrhynchos
ENSMGAG00000012117LSM56298.214ENSACAG00000009530LSM59398.214Anolis_carolinensis
ENSMGAG00000012117LSM510078.022ENSANAG00000037758-10078.022Aotus_nancymaae
ENSMGAG00000012117LSM59995.556ENSANAG00000024192-9495.556Aotus_nancymaae
ENSMGAG00000012117LSM510098.901ENSANAG00000034409-10098.901Aotus_nancymaae
ENSMGAG00000012117LSM59695.402ENSACLG00000012891lsm59995.402Astatotilapia_calliptera
ENSMGAG00000012117LSM510081.915ENSAMXG00000035543lsm510081.915Astyanax_mexicanus
ENSMGAG00000012117LSM510098.901ENSBTAG00000002332LSM510098.901Bos_taurus
ENSMGAG00000012117LSM55379.167ENSBTAG00000052014-6379.167Bos_taurus
ENSMGAG00000012117LSM510074.725WBGene00003079lsm-510074.725Caenorhabditis_elegans
ENSMGAG00000012117LSM510098.901ENSCJAG00000047379LSM58190.385Callithrix_jacchus
ENSMGAG00000012117LSM59985.556ENSCJAG00000005678-10085.556Callithrix_jacchus
ENSMGAG00000012117LSM55592.000ENSCAFG00000030781-5892.000Canis_familiaris
ENSMGAG00000012117LSM510097.802ENSCAFG00000019261-10097.802Canis_familiaris
ENSMGAG00000012117LSM510098.901ENSCAFG00020004946LSM510098.901Canis_lupus_dingo
ENSMGAG00000012117LSM58174.324ENSCHIG00000021428-9571.591Capra_hircus
ENSMGAG00000012117LSM510096.703ENSCHIG00000004079-10096.703Capra_hircus
ENSMGAG00000012117LSM510098.901ENSCHIG00000024539LSM510098.901Capra_hircus
ENSMGAG00000012117LSM510085.714ENSTSYG00000028728-10085.714Carlito_syrichta
ENSMGAG00000012117LSM510098.901ENSTSYG00000006449-10098.901Carlito_syrichta
ENSMGAG00000012117LSM510073.626ENSTSYG00000036637-10073.626Carlito_syrichta
ENSMGAG00000012117LSM510080.220ENSTSYG00000026530-9180.220Carlito_syrichta
ENSMGAG00000012117LSM58292.000ENSCAPG00000006980LSM510092.000Cavia_aperea
ENSMGAG00000012117LSM510098.901ENSCPOG00000036386LSM510098.901Cavia_porcellus
ENSMGAG00000012117LSM510067.033ENSCCAG00000037334-10067.033Cebus_capucinus
ENSMGAG00000012117LSM510098.901ENSCCAG00000037808-10098.901Cebus_capucinus
ENSMGAG00000012117LSM510097.802ENSCCAG00000000821-10097.802Cebus_capucinus
ENSMGAG00000012117LSM510080.220ENSCCAG00000032792-10080.220Cebus_capucinus
ENSMGAG00000012117LSM510096.703ENSCCAG00000032123-10096.703Cebus_capucinus
ENSMGAG00000012117LSM59987.778ENSCATG00000014790-9596.364Cercocebus_atys
ENSMGAG00000012117LSM510098.901ENSCATG00000040218LSM5100100.000Cercocebus_atys
ENSMGAG00000012117LSM510098.901ENSCLAG00000000202LSM510098.901Chinchilla_lanigera
ENSMGAG00000012117LSM510082.418ENSCLAG00000005062-9082.418Chinchilla_lanigera
ENSMGAG00000012117LSM58298.667ENSCHOG00000005335LSM59998.667Choloepus_hoffmanni
ENSMGAG00000012117LSM510098.901ENSCPBG00000013685LSM510098.901Chrysemys_picta_bellii
ENSMGAG00000012117LSM59888.764ENSCING00000020625-9988.764Ciona_intestinalis
ENSMGAG00000012117LSM59588.372ENSCSAVG00000001439-9888.372Ciona_savignyi
ENSMGAG00000012117LSM510098.901ENSCANG00000039909LSM5100100.000Colobus_angolensis_palliatus
ENSMGAG00000012117LSM510098.901ENSCGRG00001015461Lsm510098.901Cricetulus_griseus_chok1gshd
ENSMGAG00000012117LSM582100.000ENSCGRG00000007677Lsm5100100.000Cricetulus_griseus_crigri
ENSMGAG00000012117LSM510058.242ENSCSEG00000015286lsm510058.242Cynoglossus_semilaevis
ENSMGAG00000012117LSM510094.505ENSCVAG00000004262lsm510094.505Cyprinodon_variegatus
ENSMGAG00000012117LSM510094.505ENSDARG00000071573lsm510096.774Danio_rerio
ENSMGAG00000012117LSM59688.506ENSDNOG00000049495-9688.506Dasypus_novemcinctus
ENSMGAG00000012117LSM510098.901ENSDNOG00000034958LSM510098.901Dasypus_novemcinctus
ENSMGAG00000012117LSM510098.901ENSDORG00000009422Lsm510098.901Dipodomys_ordii
ENSMGAG00000012117LSM59879.775FBgn0035675CG66109879.775Drosophila_melanogaster
ENSMGAG00000012117LSM58181.081ENSETEG00000016074-9881.081Echinops_telfairi
ENSMGAG00000012117LSM59866.292ENSETEG00000000777-9966.292Echinops_telfairi
ENSMGAG00000012117LSM59975.556ENSETEG00000001469-9975.556Echinops_telfairi
ENSMGAG00000012117LSM510098.901ENSETEG00000018068LSM510098.901Echinops_telfairi
ENSMGAG00000012117LSM510079.121ENSETEG00000010651-10079.121Echinops_telfairi
ENSMGAG00000012117LSM510090.110ENSEBUG00000008540lsm510090.110Eptatretus_burgeri
ENSMGAG00000012117LSM510098.901ENSEASG00005003500LSM510098.901Equus_asinus_asinus
ENSMGAG00000012117LSM510084.615ENSECAG00000018445LSM510084.615Equus_caballus
ENSMGAG00000012117LSM56394.737ENSEEUG00000004102LSM59594.737Erinaceus_europaeus
ENSMGAG00000012117LSM510094.505ENSELUG00000007792lsm510094.505Esox_lucius
ENSMGAG00000012117LSM510098.901ENSFCAG00000000230LSM510098.901Felis_catus
ENSMGAG00000012117LSM584100.000ENSFALG00000001892LSM592100.000Ficedula_albicollis
ENSMGAG00000012117LSM510065.934ENSFDAG00000008685-10065.934Fukomys_damarensis
ENSMGAG00000012117LSM510098.901ENSFDAG00000008767LSM510098.901Fukomys_damarensis
ENSMGAG00000012117LSM59976.667ENSFHEG00000004011lsm59676.667Fundulus_heteroclitus
ENSMGAG00000012117LSM59994.444ENSGMOG00000018235lsm510094.444Gadus_morhua
ENSMGAG00000012117LSM5100100.000ENSGALG00000041625LSM5100100.000Gallus_gallus
ENSMGAG00000012117LSM56896.774ENSGAFG00000016824lsm510096.774Gambusia_affinis
ENSMGAG00000012117LSM510094.505ENSGACG00000005528lsm510094.505Gasterosteus_aculeatus
ENSMGAG00000012117LSM510098.901ENSGAGG00000015593LSM510098.901Gopherus_agassizii
ENSMGAG00000012117LSM510098.901ENSGGOG00000043469LSM510098.901Gorilla_gorilla
ENSMGAG00000012117LSM59695.402ENSHBUG00000013773lsm59995.402Haplochromis_burtoni
ENSMGAG00000012117LSM510098.901ENSHGLG00000011765LSM510098.901Heterocephalus_glaber_female
ENSMGAG00000012117LSM510095.604ENSHGLG00100015610LSM510095.604Heterocephalus_glaber_male
ENSMGAG00000012117LSM510059.341ENSHCOG00000008288lsm510059.341Hippocampus_comes
ENSMGAG00000012117LSM510093.407ENSIPUG00000021095LSM510093.407Ictalurus_punctatus
ENSMGAG00000012117LSM510098.901ENSSTOG00000012662LSM510098.901Ictidomys_tridecemlineatus
ENSMGAG00000012117LSM59679.775ENSSTOG00000033886-10079.775Ictidomys_tridecemlineatus
ENSMGAG00000012117LSM510070.330ENSJJAG00000016144-9270.330Jaculus_jaculus
ENSMGAG00000012117LSM510096.703ENSJJAG00000012145-10096.703Jaculus_jaculus
ENSMGAG00000012117LSM58789.873ENSJJAG00000004475-10089.873Jaculus_jaculus
ENSMGAG00000012117LSM510093.407ENSKMAG00000021861lsm510093.407Kryptolebias_marmoratus
ENSMGAG00000012117LSM56280.357ENSLBEG00000017379lsm59280.357Labrus_bergylta
ENSMGAG00000012117LSM510086.813ENSLBEG00000009235LSM57086.813Labrus_bergylta
ENSMGAG00000012117LSM510095.604ENSLACG00000022448LSM510095.604Latimeria_chalumnae
ENSMGAG00000012117LSM510094.505ENSLOCG00000012903lsm510094.505Lepisosteus_oculatus
ENSMGAG00000012117LSM510071.429ENSLAFG00000027938-10071.429Loxodonta_africana
ENSMGAG00000012117LSM510098.901ENSLAFG00000029579LSM510098.901Loxodonta_africana
ENSMGAG00000012117LSM510095.604ENSMFAG00000030152-10095.604Macaca_fascicularis
ENSMGAG00000012117LSM55395.833ENSMFAG00000031187-8195.833Macaca_fascicularis
ENSMGAG00000012117LSM510098.901ENSMFAG00000038508LSM510098.901Macaca_fascicularis
ENSMGAG00000012117LSM59988.889ENSMMUG00000039822-10088.889Macaca_mulatta
ENSMGAG00000012117LSM510095.604ENSMMUG00000030131-10095.604Macaca_mulatta
ENSMGAG00000012117LSM55790.385ENSMMUG00000045129-8190.385Macaca_mulatta
ENSMGAG00000012117LSM510098.901ENSMNEG00000015331LSM5100100.000Macaca_nemestrina
ENSMGAG00000012117LSM510095.604ENSMNEG00000037935-10095.604Macaca_nemestrina
ENSMGAG00000012117LSM59887.640ENSMLEG00000034037-10087.640Mandrillus_leucophaeus
ENSMGAG00000012117LSM510098.901ENSMLEG00000024945LSM510098.901Mandrillus_leucophaeus
ENSMGAG00000012117LSM510090.110ENSMAMG00000012869lsm510090.110Mastacembelus_armatus
ENSMGAG00000012117LSM59695.402ENSMZEG00005019554lsm59995.402Maylandia_zebra
ENSMGAG00000012117LSM510097.802ENSMAUG00000008132-10097.802Mesocricetus_auratus
ENSMGAG00000012117LSM510098.901ENSMAUG00000012222Lsm510098.901Mesocricetus_auratus
ENSMGAG00000012117LSM510098.901ENSMICG00000005353LSM510098.901Microcebus_murinus
ENSMGAG00000012117LSM59976.667ENSMICG00000033928-9676.667Microcebus_murinus
ENSMGAG00000012117LSM510098.901ENSMOCG00000012018Lsm510098.901Microtus_ochrogaster
ENSMGAG00000012117LSM58497.368ENSMMOG00000004026lsm58797.368Mola_mola
ENSMGAG00000012117LSM568100.000ENSMODG00000013274-100100.000Monodelphis_domestica
ENSMGAG00000012117LSM56891.935ENSMALG00000010343lsm510091.935Monopterus_albus
ENSMGAG00000012117LSM510098.901MGP_CAROLIEiJ_G0028421Lsm510098.901Mus_caroli
ENSMGAG00000012117LSM510098.901ENSMUSG00000091625Lsm510098.901Mus_musculus
ENSMGAG00000012117LSM510098.901MGP_PahariEiJ_G0022171Lsm510098.901Mus_pahari
ENSMGAG00000012117LSM510098.901MGP_SPRETEiJ_G0029423Lsm510098.901Mus_spretus
ENSMGAG00000012117LSM510098.901ENSMLUG00000017028LSM510098.901Myotis_lucifugus
ENSMGAG00000012117LSM510086.022ENSNGAG00000017707-10086.022Nannospalax_galili
ENSMGAG00000012117LSM510098.901ENSNGAG00000024142Lsm510098.901Nannospalax_galili
ENSMGAG00000012117LSM59977.778ENSNGAG00000022569-9677.778Nannospalax_galili
ENSMGAG00000012117LSM56396.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSMGAG00000012117LSM510098.901ENSNLEG00000015268LSM510098.901Nomascus_leucogenys
ENSMGAG00000012117LSM582100.000ENSOPRG00000002443LSM5100100.000Ochotona_princeps
ENSMGAG00000012117LSM510098.901ENSODEG00000019072-10098.901Octodon_degus
ENSMGAG00000012117LSM510098.901ENSODEG00000008258-10098.901Octodon_degus
ENSMGAG00000012117LSM58261.333ENSOANG00000014540-10061.333Ornithorhynchus_anatinus
ENSMGAG00000012117LSM510098.901ENSOCUG00000029043LSM510098.901Oryctolagus_cuniculus
ENSMGAG00000012117LSM510093.407ENSORLG00000027725lsm55893.407Oryzias_latipes
ENSMGAG00000012117LSM59690.805ENSORLG00020003019lsm58690.805Oryzias_latipes_hni
ENSMGAG00000012117LSM510093.407ENSORLG00015003338lsm510093.407Oryzias_latipes_hsok
ENSMGAG00000012117LSM510092.308ENSOMEG00000001078lsm510092.308Oryzias_melastigma
ENSMGAG00000012117LSM510098.901ENSOGAG00000013892LSM510098.901Otolemur_garnettii
ENSMGAG00000012117LSM510098.901ENSOARG00000006944LSM510098.901Ovis_aries
ENSMGAG00000012117LSM510098.901ENSPPAG00000003697-10098.901Pan_paniscus
ENSMGAG00000012117LSM510098.901ENSPPRG00000002550LSM510098.901Panthera_pardus
ENSMGAG00000012117LSM510098.901ENSPTIG00000015604LSM510098.901Panthera_tigris_altaica
ENSMGAG00000012117LSM510098.901ENSPTRG00000019057LSM510098.901Pan_troglodytes
ENSMGAG00000012117LSM510082.418ENSPTRG00000049488-10084.615Pan_troglodytes
ENSMGAG00000012117LSM510098.901ENSPANG00000032179-10098.901Papio_anubis
ENSMGAG00000012117LSM510094.505ENSPANG00000033477-10094.505Papio_anubis
ENSMGAG00000012117LSM59988.889ENSPANG00000032538-10088.889Papio_anubis
ENSMGAG00000012117LSM510094.505ENSPKIG00000011910lsm510094.505Paramormyrops_kingsleyae
ENSMGAG00000012117LSM581100.000ENSPSIG00000014796LSM5100100.000Pelodiscus_sinensis
ENSMGAG00000012117LSM56896.774ENSPMGG00000011699lsm510096.774Periophthalmus_magnuspinnatus
ENSMGAG00000012117LSM510071.429ENSPEMG00000022375-10071.429Peromyscus_maniculatus_bairdii
ENSMGAG00000012117LSM55297.872ENSPEMG00000019994-8097.872Peromyscus_maniculatus_bairdii
ENSMGAG00000012117LSM510094.505ENSPFOG00000001433lsm510094.505Poecilia_formosa
ENSMGAG00000012117LSM510094.505ENSPLAG00000009665lsm510094.505Poecilia_latipinna
ENSMGAG00000012117LSM510094.505ENSPMEG00000022265lsm510094.505Poecilia_mexicana
ENSMGAG00000012117LSM56896.774ENSPREG00000022452lsm510096.774Poecilia_reticulata
ENSMGAG00000012117LSM510095.604ENSPPYG00000017661LSM510095.604Pongo_abelii
ENSMGAG00000012117LSM58998.765ENSPCAG00000013740LSM510098.765Procavia_capensis
ENSMGAG00000012117LSM510098.901ENSPVAG00000009786LSM510098.901Pteropus_vampyrus
ENSMGAG00000012117LSM59695.402ENSPNYG00000022236lsm59995.402Pundamilia_nyererei
ENSMGAG00000012117LSM510093.407ENSPNAG00000001887lsm510093.407Pygocentrus_nattereri
ENSMGAG00000012117LSM510098.901ENSRNOG00000042126Lsm510098.901Rattus_norvegicus
ENSMGAG00000012117LSM510094.565ENSRNOG00000027305AABR07065089.110094.565Rattus_norvegicus
ENSMGAG00000012117LSM510098.901ENSRBIG00000027803-100100.000Rhinopithecus_bieti
ENSMGAG00000012117LSM510097.802ENSRBIG00000024431-10097.802Rhinopithecus_bieti
ENSMGAG00000012117LSM510098.901ENSRBIG00000030714-10098.901Rhinopithecus_bieti
ENSMGAG00000012117LSM510098.901ENSRBIG00000030340-10098.901Rhinopithecus_bieti
ENSMGAG00000012117LSM510098.901ENSRROG00000042782-100100.000Rhinopithecus_roxellana
ENSMGAG00000012117LSM510098.901ENSRROG00000023884-10098.901Rhinopithecus_roxellana
ENSMGAG00000012117LSM510098.901ENSRROG00000004655-10098.901Rhinopithecus_roxellana
ENSMGAG00000012117LSM58551.220YER146W-8851.220Saccharomyces_cerevisiae
ENSMGAG00000012117LSM510096.703ENSSBOG00000019124-10096.703Saimiri_boliviensis_boliviensis
ENSMGAG00000012117LSM510098.901ENSSBOG00000012312LSM510098.901Saimiri_boliviensis_boliviensis
ENSMGAG00000012117LSM510076.923ENSSBOG00000034794-10076.923Saimiri_boliviensis_boliviensis
ENSMGAG00000012117LSM510094.505ENSSFOG00015010099lsm510094.505Scleropages_formosus
ENSMGAG00000012117LSM510059.341ENSSMAG00000007895lsm510059.341Scophthalmus_maximus
ENSMGAG00000012117LSM56896.774ENSSDUG00000010762lsm510096.774Seriola_dumerili
ENSMGAG00000012117LSM510094.505ENSSLDG00000025242lsm510094.505Seriola_lalandi_dorsalis
ENSMGAG00000012117LSM58579.221ENSSLDG00000008014-9279.221Seriola_lalandi_dorsalis
ENSMGAG00000012117LSM510070.330ENSSARG00000003330LSM510070.330Sorex_araneus
ENSMGAG00000012117LSM510096.703ENSSPUG00000002690LSM510098.387Sphenodon_punctatus
ENSMGAG00000012117LSM510059.341ENSSPAG00000005435lsm510059.341Stegastes_partitus
ENSMGAG00000012117LSM57688.406ENSSSCG00000029661-9688.406Sus_scrofa
ENSMGAG00000012117LSM510098.901ENSSSCG00000026064-10098.901Sus_scrofa
ENSMGAG00000012117LSM510096.703ENSTGUG00000017539LSM510096.703Taeniopygia_guttata
ENSMGAG00000012117LSM58687.952ENSTRUG00000017749lsm56487.952Takifugu_rubripes
ENSMGAG00000012117LSM59695.402ENSTNIG00000008695lsm59995.402Tetraodon_nigroviridis
ENSMGAG00000012117LSM510098.901ENSTBEG00000004876LSM510098.901Tupaia_belangeri
ENSMGAG00000012117LSM510098.901ENSTTRG00000004237LSM510098.901Tursiops_truncatus
ENSMGAG00000012117LSM55790.385ENSUAMG00000009786LSM56890.385Ursus_americanus
ENSMGAG00000012117LSM510097.802ENSUMAG00000002625LSM56597.802Ursus_maritimus
ENSMGAG00000012117LSM510098.901ENSVPAG00000009985LSM510098.901Vicugna_pacos
ENSMGAG00000012117LSM510098.901ENSVVUG00000021311LSM510098.901Vulpes_vulpes
ENSMGAG00000012117LSM59093.902ENSXETG00000026465lsm510093.902Xenopus_tropicalis
ENSMGAG00000012117LSM56896.774ENSXCOG00000015348lsm510096.774Xiphophorus_couchianus
ENSMGAG00000012117LSM510094.505ENSXMAG00000029988lsm510094.505Xiphophorus_maculatus

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