EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMGAG00000014224 (Gene tree)
Gene ID: -
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Meleagris_gallopavo
Status: putative
Strand: Plus strand
Length: 21041 bases
Position: chr1:81983230-82004270
Accession: 2428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMGAP00000017538	CSD	PF00313.22	1e-26	1	1
ENSMGAP00000015044	CSD	PF00313.22	3.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMGAT00000020273	YBX3-202	1191	-	ENSMGAP00000017538	215 (aa)	-	G3UPN6
ENSMGAT00000015992	YBX3-201	1395	-	ENSMGAP00000015044	283 (aa)	-	G1NN44

Gene Model

Click here to download ENSMGAG00000014224's gene model file

Pathways

Pathway ID	Pathway Name	Source
mgp04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMGAG00000014224's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMGAG00000014224	YBX3	99	51.825	ENSMGAG00000006879	YBX1	72	97.531

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMGAG00000014224	YBX3	93	100.000	ENSG00000060138	YBX3	91	96.429	Homo_sapiens
ENSMGAG00000014224	YBX3	100	66.783	ENSAMEG00000009393	YBX3	81	67.832	Ailuropoda_melanoleuca
ENSMGAG00000014224	YBX3	99	74.913	ENSAPLG00000003147	YBX3	76	100.000	Anas_platyrhynchos
ENSMGAG00000014224	YBX3	93	100.000	ENSANAG00000024492	-	70	98.095	Aotus_nancymaae
ENSMGAG00000014224	YBX3	100	58.296	ENSANAG00000033366	-	74	82.143	Aotus_nancymaae
ENSMGAG00000014224	YBX3	100	66.202	ENSBTAG00000009663	YBX3	69	73.649	Bos_taurus
ENSMGAG00000014224	YBX3	93	100.000	ENSCJAG00000021660	-	70	98.095	Callithrix_jacchus
ENSMGAG00000014224	YBX3	54	89.412	ENSCJAG00000033824	-	70	79.091	Callithrix_jacchus
ENSMGAG00000014224	YBX3	100	83.333	ENSCAFG00000013401	YBX3	99	83.333	Canis_familiaris
ENSMGAG00000014224	YBX3	100	78.704	ENSCAFG00020006412	YBX3	70	78.704	Canis_lupus_dingo
ENSMGAG00000014224	YBX3	100	65.854	ENSCHIG00000010863	YBX3	80	66.783	Capra_hircus
ENSMGAG00000014224	YBX3	93	100.000	ENSTSYG00000004204	-	82	98.095	Carlito_syrichta
ENSMGAG00000014224	YBX3	100	72.350	ENSTSYG00000035821	-	66	97.590	Carlito_syrichta
ENSMGAG00000014224	YBX3	99	66.667	ENSCAPG00000015039	YBX3	93	66.667	Cavia_aperea
ENSMGAG00000014224	YBX3	100	82.407	ENSCPOG00000011329	YBX3	78	98.095	Cavia_porcellus
ENSMGAG00000014224	YBX3	93	100.000	ENSCCAG00000016469	YBX3	70	98.095	Cebus_capucinus
ENSMGAG00000014224	YBX3	93	100.000	ENSCATG00000034411	YBX3	70	98.095	Cercocebus_atys
ENSMGAG00000014224	YBX3	99	63.390	ENSCLAG00000016030	YBX3	93	66.316	Chinchilla_lanigera
ENSMGAG00000014224	YBX3	93	100.000	ENSCSAG00000008744	YBX3	77	66.551	Chlorocebus_sabaeus
ENSMGAG00000014224	YBX3	100	98.095	ENSCHOG00000011988	YBX3	58	98.095	Choloepus_hoffmanni
ENSMGAG00000014224	YBX3	98	89.100	ENSCPBG00000014147	YBX3	74	98.020	Chrysemys_picta_bellii
ENSMGAG00000014224	YBX3	93	100.000	ENSCANG00000036801	YBX3	86	98.095	Colobus_angolensis_palliatus
ENSMGAG00000014224	YBX3	93	100.000	ENSCGRG00001016148	Ybx3	72	98.095	Cricetulus_griseus_chok1gshd
ENSMGAG00000014224	YBX3	98	94.175	ENSCGRG00000004563	Ybx3	98	65.517	Cricetulus_griseus_crigri
ENSMGAG00000014224	YBX3	92	100.000	ENSDORG00000009103	Ybx3	80	68.531	Dipodomys_ordii
ENSMGAG00000014224	YBX3	92	100.000	ENSETEG00000002557	YBX3	90	80.000	Echinops_telfairi
ENSMGAG00000014224	YBX3	100	75.814	ENSEASG00005014726	YBX3	69	85.542	Equus_asinus_asinus
ENSMGAG00000014224	YBX3	100	78.704	ENSECAG00000013777	YBX3	70	87.619	Equus_caballus
ENSMGAG00000014224	YBX3	92	100.000	ENSEEUG00000010415	YBX3	100	65.614	Erinaceus_europaeus
ENSMGAG00000014224	YBX3	100	80.645	ENSFCAG00000027748	YBX3	71	82.949	Felis_catus
ENSMGAG00000014224	YBX3	99	71.777	ENSFALG00000003661	YBX3	100	71.777	Ficedula_albicollis
ENSMGAG00000014224	YBX3	92	100.000	ENSFDAG00000021192	YBX3	91	64.912	Fukomys_damarensis
ENSMGAG00000014224	YBX3	100	98.605	ENSGALG00000031890	YBX3	74	98.605	Gallus_gallus
ENSMGAG00000014224	YBX3	100	87.907	ENSGAGG00000017780	YBX3	74	98.095	Gopherus_agassizii
ENSMGAG00000014224	YBX3	93	100.000	ENSGGOG00000001352	YBX3	70	98.095	Gorilla_gorilla
ENSMGAG00000014224	YBX3	100	61.710	ENSHGLG00000014798	-	84	62.963	Heterocephalus_glaber_female
ENSMGAG00000014224	YBX3	90	72.222	ENSHGLG00000015495	-	73	79.397	Heterocephalus_glaber_female
ENSMGAG00000014224	YBX3	99	83.410	ENSHGLG00100003589	YBX3	84	98.077	Heterocephalus_glaber_male
ENSMGAG00000014224	YBX3	100	63.509	ENSSTOG00000032577	-	81	63.986	Ictidomys_tridecemlineatus
ENSMGAG00000014224	YBX3	72	100.000	ENSSTOG00000002108	-	88	63.869	Ictidomys_tridecemlineatus
ENSMGAG00000014224	YBX3	64	96.721	ENSJJAG00000014239	Ybx3	91	83.750	Jaculus_jaculus
ENSMGAG00000014224	YBX3	93	100.000	ENSLAFG00000017247	YBX3	70	80.272	Loxodonta_africana
ENSMGAG00000014224	YBX3	93	100.000	ENSMFAG00000039369	YBX3	70	98.095	Macaca_fascicularis
ENSMGAG00000014224	YBX3	93	100.000	ENSMMUG00000022469	YBX3	88	66.551	Macaca_mulatta
ENSMGAG00000014224	YBX3	93	100.000	ENSMNEG00000045109	YBX3	70	98.095	Macaca_nemestrina
ENSMGAG00000014224	YBX3	93	100.000	ENSMLEG00000033618	YBX3	74	98.095	Mandrillus_leucophaeus
ENSMGAG00000014224	YBX3	93	100.000	ENSMAUG00000012185	Ybx3	84	98.095	Mesocricetus_auratus
ENSMGAG00000014224	YBX3	93	100.000	ENSMICG00000038002	-	77	67.832	Microcebus_murinus
ENSMGAG00000014224	YBX3	100	73.488	ENSMICG00000031459	-	63	95.181	Microcebus_murinus
ENSMGAG00000014224	YBX3	93	100.000	ENSMOCG00000016291	Ybx3	89	98.095	Microtus_ochrogaster
ENSMGAG00000014224	YBX3	100	63.380	ENSMODG00000018248	YBX3	83	80.137	Monodelphis_domestica
ENSMGAG00000014224	YBX3	93	100.000	MGP_CAROLIEiJ_G0028947	Ybx3	72	98.095	Mus_caroli
ENSMGAG00000014224	YBX3	93	100.000	ENSMUSG00000030189	Ybx3	72	98.095	Mus_musculus
ENSMGAG00000014224	YBX3	93	100.000	MGP_PahariEiJ_G0022709	Ybx3	72	98.095	Mus_pahari
ENSMGAG00000014224	YBX3	93	100.000	MGP_SPRETEiJ_G0029994	Ybx3	72	98.095	Mus_spretus
ENSMGAG00000014224	YBX3	100	58.824	ENSMPUG00000011810	YBX3	77	51.525	Mustela_putorius_furo
ENSMGAG00000014224	YBX3	92	63.941	ENSMLUG00000007476	YBX3	91	77.165	Myotis_lucifugus
ENSMGAG00000014224	YBX3	99	78.605	ENSNGAG00000000710	Ybx3	86	89.320	Nannospalax_galili
ENSMGAG00000014224	YBX3	93	87.356	ENSNLEG00000034844	YBX3	75	87.619	Nomascus_leucogenys
ENSMGAG00000014224	YBX3	94	60.821	ENSODEG00000017957	YBX3	84	61.189	Octodon_degus
ENSMGAG00000014224	YBX3	100	69.643	ENSOCUG00000001889	YBX3	83	61.538	Oryctolagus_cuniculus
ENSMGAG00000014224	YBX3	98	97.980	ENSOGAG00000013245	YBX3	77	66.096	Otolemur_garnettii
ENSMGAG00000014224	YBX3	93	100.000	ENSOARG00000020919	YBX3	96	66.084	Ovis_aries
ENSMGAG00000014224	YBX3	93	100.000	ENSPPAG00000039068	YBX3	73	98.095	Pan_paniscus
ENSMGAG00000014224	YBX3	100	80.645	ENSPPRG00000005859	YBX3	71	82.949	Panthera_pardus
ENSMGAG00000014224	YBX3	99	67.719	ENSPTIG00000005322	YBX3	81	67.832	Panthera_tigris_altaica
ENSMGAG00000014224	YBX3	93	100.000	ENSPTRG00000004681	YBX3	70	98.095	Pan_troglodytes
ENSMGAG00000014224	YBX3	93	100.000	ENSPANG00000010280	YBX3	70	98.095	Papio_anubis
ENSMGAG00000014224	YBX3	99	88.318	ENSPSIG00000009247	YBX3	100	88.318	Pelodiscus_sinensis
ENSMGAG00000014224	YBX3	93	100.000	ENSPEMG00000012132	-	85	98.095	Peromyscus_maniculatus_bairdii
ENSMGAG00000014224	YBX3	100	82.407	ENSPEMG00000010391	-	80	98.095	Peromyscus_maniculatus_bairdii
ENSMGAG00000014224	YBX3	90	62.109	ENSPCIG00000029949	YBX3	100	62.109	Phascolarctos_cinereus
ENSMGAG00000014224	YBX3	93	100.000	ENSPPYG00000004279	YBX3	77	67.247	Pongo_abelii
ENSMGAG00000014224	YBX3	64	77.181	ENSPCAG00000001397	YBX3	63	79.195	Procavia_capensis
ENSMGAG00000014224	YBX3	100	54.704	ENSPVAG00000006740	YBX3	70	80.405	Pteropus_vampyrus
ENSMGAG00000014224	YBX3	93	100.000	ENSRNOG00000005480	Ybx3	72	98.095	Rattus_norvegicus
ENSMGAG00000014224	YBX3	93	100.000	ENSRBIG00000039208	YBX3	70	98.095	Rhinopithecus_bieti
ENSMGAG00000014224	YBX3	93	100.000	ENSRROG00000029638	YBX3	70	98.095	Rhinopithecus_roxellana
ENSMGAG00000014224	YBX3	93	100.000	ENSSBOG00000030573	YBX3	70	98.077	Saimiri_boliviensis_boliviensis
ENSMGAG00000014224	YBX3	91	98.837	ENSSHAG00000003262	YBX3	71	98.077	Sarcophilus_harrisii
ENSMGAG00000014224	YBX3	64	89.130	ENSSPUG00000009911	-	65	97.170	Sphenodon_punctatus
ENSMGAG00000014224	YBX3	100	81.106	ENSSSCG00000000633	YBX3	68	98.095	Sus_scrofa
ENSMGAG00000014224	YBX3	99	100.000	ENSTGUG00000012047	YBX3	75	100.000	Taeniopygia_guttata
ENSMGAG00000014224	YBX3	93	98.851	ENSTBEG00000012570	YBX3	71	79.592	Tupaia_belangeri
ENSMGAG00000014224	YBX3	89	67.153	ENSTTRG00000008045	YBX3	89	75.410	Tursiops_truncatus
ENSMGAG00000014224	YBX3	97	62.590	ENSUAMG00000016662	YBX3	100	63.669	Ursus_americanus
ENSMGAG00000014224	YBX3	99	66.667	ENSUMAG00000016118	YBX3	94	67.832	Ursus_maritimus
ENSMGAG00000014224	YBX3	82	100.000	ENSVPAG00000000876	YBX3	62	100.000	Vicugna_pacos
ENSMGAG00000014224	YBX3	97	62.230	ENSVVUG00000004956	YBX3	100	63.309	Vulpes_vulpes
ENSMGAG00000014224	YBX3	99	76.037	ENSXETG00000016239	ybx3	87	72.350	Xenopus_tropicalis