EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMICG00000000097 (Gene tree)
Gene ID: 105884833
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Minus strand
Length: 424622 bases
Position: chr11:22980270-23404891
Accession: 105884833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000024160	TUDOR	PF00567.24	9.3e-28	1	1
ENSMICP00000000092	TUDOR	PF00567.24	9.7e-28	1	1
ENSMICP00000038165	TUDOR	PF00567.24	1.1e-27	1	1
ENSMICP00000000092	SNase	PF00565.17	5.4e-69	1	5
ENSMICP00000000092	SNase	PF00565.17	5.4e-69	2	5
ENSMICP00000000092	SNase	PF00565.17	5.4e-69	3	5
ENSMICP00000000092	SNase	PF00565.17	5.4e-69	4	5
ENSMICP00000000092	SNase	PF00565.17	5.4e-69	5	5
ENSMICP00000038165	SNase	PF00565.17	8.3e-69	1	5
ENSMICP00000038165	SNase	PF00565.17	8.3e-69	2	5
ENSMICP00000038165	SNase	PF00565.17	8.3e-69	3	5
ENSMICP00000038165	SNase	PF00565.17	8.3e-69	4	5
ENSMICP00000038165	SNase	PF00565.17	8.3e-69	5	5
ENSMICP00000024160	SNase	PF00565.17	2.1e-67	1	5
ENSMICP00000024160	SNase	PF00565.17	2.1e-67	2	5
ENSMICP00000024160	SNase	PF00565.17	2.1e-67	3	5
ENSMICP00000024160	SNase	PF00565.17	2.1e-67	4	5
ENSMICP00000024160	SNase	PF00565.17	2.1e-67	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000028038	SND1-202	2998	-	ENSMICP00000038165	967 (aa)	-	UPI000C2EA351
ENSMICT00000000099	SND1-201	3656	XM_012789122	ENSMICP00000000092	910 (aa)	XP_012644576	UPI00064316C3
ENSMICT00000027674	SND1-203	2661	-	ENSMICP00000024160	886 (aa)	-	UPI000C2EA3FA

Gene Model

Click here to download ENSMICG00000000097's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000000097's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000000097	SND1	100	99.121	ENSG00000197157	SND1	100	99.121	Homo_sapiens
ENSMICG00000000097	SND1	100	83.772	ENSAPOG00000017599	snd1	99	84.650	Acanthochromis_polyacanthus
ENSMICG00000000097	SND1	100	98.575	ENSAMEG00000004664	SND1	100	96.273	Ailuropoda_melanoleuca
ENSMICG00000000097	SND1	98	82.083	ENSACIG00000003551	snd1	99	81.960	Amphilophus_citrinellus
ENSMICG00000000097	SND1	100	83.772	ENSAOCG00000014166	snd1	99	84.650	Amphiprion_ocellaris
ENSMICG00000000097	SND1	100	83.772	ENSAPEG00000007067	snd1	99	84.650	Amphiprion_percula
ENSMICG00000000097	SND1	98	82.905	ENSATEG00000018475	snd1	88	84.151	Anabas_testudineus
ENSMICG00000000097	SND1	100	99.121	ENSANAG00000034463	SND1	100	99.121	Aotus_nancymaae
ENSMICG00000000097	SND1	99	83.077	ENSACLG00000022897	snd1	99	84.076	Astatotilapia_calliptera
ENSMICG00000000097	SND1	99	84.158	ENSAMXG00000016318	snd1	98	84.744	Astyanax_mexicanus
ENSMICG00000000097	SND1	100	98.681	ENSBTAG00000010692	SND1	100	98.681	Bos_taurus
ENSMICG00000000097	SND1	98	46.820	WBGene00006626	tsn-1	98	47.259	Caenorhabditis_elegans
ENSMICG00000000097	SND1	100	98.901	ENSCJAG00000017668	SND1	100	98.901	Callithrix_jacchus
ENSMICG00000000097	SND1	100	99.011	ENSCAFG00000001700	SND1	100	99.011	Canis_familiaris
ENSMICG00000000097	SND1	100	99.011	ENSCAFG00020021639	SND1	100	99.011	Canis_lupus_dingo
ENSMICG00000000097	SND1	100	99.011	ENSCHIG00000023390	SND1	100	99.011	Capra_hircus
ENSMICG00000000097	SND1	73	99.120	ENSTSYG00000004979	SND1	96	99.120	Carlito_syrichta
ENSMICG00000000097	SND1	99	84.667	ENSCAPG00000010677	SND1	98	84.710	Cavia_aperea
ENSMICG00000000097	SND1	100	98.132	ENSCPOG00000006251	SND1	100	98.132	Cavia_porcellus
ENSMICG00000000097	SND1	100	99.231	ENSCCAG00000036847	SND1	100	99.231	Cebus_capucinus
ENSMICG00000000097	SND1	100	99.341	ENSCATG00000035214	SND1	100	99.341	Cercocebus_atys
ENSMICG00000000097	SND1	100	98.242	ENSCLAG00000011796	SND1	100	98.242	Chinchilla_lanigera
ENSMICG00000000097	SND1	100	99.341	ENSCSAG00000010182	SND1	100	99.341	Chlorocebus_sabaeus
ENSMICG00000000097	SND1	79	90.196	ENSCHOG00000002218	SND1	86	90.196	Choloepus_hoffmanni
ENSMICG00000000097	SND1	100	92.198	ENSCPBG00000018094	SND1	98	93.161	Chrysemys_picta_bellii
ENSMICG00000000097	SND1	98	57.143	ENSCING00000000524	-	98	57.143	Ciona_intestinalis
ENSMICG00000000097	SND1	99	58.306	ENSCSAVG00000008807	-	99	58.453	Ciona_savignyi
ENSMICG00000000097	SND1	100	99.341	ENSCANG00000035119	SND1	100	99.341	Colobus_angolensis_palliatus
ENSMICG00000000097	SND1	100	97.363	ENSCGRG00001022514	Snd1	100	97.363	Cricetulus_griseus_chok1gshd
ENSMICG00000000097	SND1	97	97.398	ENSCGRG00000012277	Snd1	99	97.398	Cricetulus_griseus_crigri
ENSMICG00000000097	SND1	98	84.676	ENSCSEG00000008661	snd1	98	84.676	Cynoglossus_semilaevis
ENSMICG00000000097	SND1	100	83.991	ENSCVAG00000010316	snd1	100	83.678	Cyprinodon_variegatus
ENSMICG00000000097	SND1	100	84.447	ENSDARG00000006766	snd1	97	87.410	Danio_rerio
ENSMICG00000000097	SND1	97	95.941	ENSDNOG00000006795	SND1	100	95.941	Dasypus_novemcinctus
ENSMICG00000000097	SND1	100	98.901	ENSDORG00000000336	Snd1	100	98.901	Dipodomys_ordii
ENSMICG00000000097	SND1	98	50.595	FBgn0035121	Tudor-SN	98	50.704	Drosophila_melanogaster
ENSMICG00000000097	SND1	91	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSMICG00000000097	SND1	60	67.297	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSMICG00000000097	SND1	100	97.408	ENSEASG00005008513	SND1	100	97.408	Equus_asinus_asinus
ENSMICG00000000097	SND1	100	99.011	ENSECAG00000011451	SND1	100	99.011	Equus_caballus
ENSMICG00000000097	SND1	100	86.923	ENSEEUG00000014737	SND1	100	86.923	Erinaceus_europaeus
ENSMICG00000000097	SND1	99	82.346	ENSELUG00000001805	snd1	95	83.278	Esox_lucius
ENSMICG00000000097	SND1	100	99.011	ENSFCAG00000008289	SND1	100	99.011	Felis_catus
ENSMICG00000000097	SND1	100	98.571	ENSFDAG00000015881	SND1	100	98.571	Fukomys_damarensis
ENSMICG00000000097	SND1	99	82.309	ENSFHEG00000004093	snd1	97	84.866	Fundulus_heteroclitus
ENSMICG00000000097	SND1	64	74.859	ENSGMOG00000018932	snd1	64	74.859	Gadus_morhua
ENSMICG00000000097	SND1	100	84.211	ENSGAFG00000008421	snd1	99	85.118	Gambusia_affinis
ENSMICG00000000097	SND1	100	53.746	ENSGACG00000019793	snd1	98	54.204	Gasterosteus_aculeatus
ENSMICG00000000097	SND1	100	99.341	ENSGGOG00000009614	SND1	100	99.341	Gorilla_gorilla
ENSMICG00000000097	SND1	99	83.590	ENSHBUG00000019135	snd1	99	84.076	Haplochromis_burtoni
ENSMICG00000000097	SND1	100	98.462	ENSHGLG00000003618	SND1	100	98.462	Heterocephalus_glaber_female
ENSMICG00000000097	SND1	99	98.011	ENSHGLG00100012449	SND1	100	98.011	Heterocephalus_glaber_male
ENSMICG00000000097	SND1	100	82.895	ENSHCOG00000005266	snd1	98	84.116	Hippocampus_comes
ENSMICG00000000097	SND1	100	82.604	ENSIPUG00000013279	snd1	98	83.630	Ictalurus_punctatus
ENSMICG00000000097	SND1	100	98.901	ENSSTOG00000002140	SND1	100	98.901	Ictidomys_tridecemlineatus
ENSMICG00000000097	SND1	100	98.681	ENSJJAG00000009561	Snd1	100	98.681	Jaculus_jaculus
ENSMICG00000000097	SND1	100	83.991	ENSKMAG00000016997	snd1	98	85.011	Kryptolebias_marmoratus
ENSMICG00000000097	SND1	100	85.067	ENSLBEG00000013563	snd1	99	83.648	Labrus_bergylta
ENSMICG00000000097	SND1	99	85.336	ENSLOCG00000015537	snd1	98	85.336	Lepisosteus_oculatus
ENSMICG00000000097	SND1	100	98.022	ENSLAFG00000009696	SND1	100	98.022	Loxodonta_africana
ENSMICG00000000097	SND1	100	99.341	ENSMFAG00000038114	SND1	100	99.341	Macaca_fascicularis
ENSMICG00000000097	SND1	100	99.341	ENSMMUG00000015432	SND1	100	99.341	Macaca_mulatta
ENSMICG00000000097	SND1	100	99.341	ENSMNEG00000039808	SND1	100	99.341	Macaca_nemestrina
ENSMICG00000000097	SND1	100	99.231	ENSMLEG00000029040	SND1	100	99.231	Mandrillus_leucophaeus
ENSMICG00000000097	SND1	99	83.793	ENSMAMG00000011739	snd1	98	84.487	Mastacembelus_armatus
ENSMICG00000000097	SND1	99	83.077	ENSMZEG00005005681	snd1	99	84.076	Maylandia_zebra
ENSMICG00000000097	SND1	100	98.242	ENSMOCG00000005040	Snd1	100	98.242	Microtus_ochrogaster
ENSMICG00000000097	SND1	100	83.333	ENSMMOG00000001795	snd1	99	84.205	Mola_mola
ENSMICG00000000097	SND1	99	95.652	ENSMODG00000015182	SND1	99	95.652	Monodelphis_domestica
ENSMICG00000000097	SND1	100	83.004	ENSMALG00000012071	snd1	98	83.817	Monopterus_albus
ENSMICG00000000097	SND1	100	97.912	MGP_CAROLIEiJ_G0028159	Snd1	100	97.912	Mus_caroli
ENSMICG00000000097	SND1	100	97.692	ENSMUSG00000001424	Snd1	100	97.692	Mus_musculus
ENSMICG00000000097	SND1	100	97.912	MGP_PahariEiJ_G0021917	Snd1	100	98.145	Mus_pahari
ENSMICG00000000097	SND1	100	97.912	MGP_SPRETEiJ_G0029159	Snd1	100	97.912	Mus_spretus
ENSMICG00000000097	SND1	100	98.352	ENSMPUG00000006545	SND1	100	98.352	Mustela_putorius_furo
ENSMICG00000000097	SND1	97	97.318	ENSMLUG00000017130	SND1	99	97.318	Myotis_lucifugus
ENSMICG00000000097	SND1	100	98.242	ENSNGAG00000011186	Snd1	100	98.242	Nannospalax_galili
ENSMICG00000000097	SND1	99	82.967	ENSNBRG00000006681	snd1	99	83.964	Neolamprologus_brichardi
ENSMICG00000000097	SND1	100	99.231	ENSNLEG00000012263	SND1	100	99.322	Nomascus_leucogenys
ENSMICG00000000097	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSMICG00000000097	SND1	100	98.462	ENSODEG00000011502	SND1	100	98.462	Octodon_degus
ENSMICG00000000097	SND1	99	82.967	ENSONIG00000011481	snd1	96	83.964	Oreochromis_niloticus
ENSMICG00000000097	SND1	98	94.369	ENSOANG00000000817	SND1	99	93.757	Ornithorhynchus_anatinus
ENSMICG00000000097	SND1	100	97.582	ENSOCUG00000001620	SND1	100	97.582	Oryctolagus_cuniculus
ENSMICG00000000097	SND1	98	84.022	ENSORLG00000015201	snd1	98	84.022	Oryzias_latipes
ENSMICG00000000097	SND1	98	84.134	ENSORLG00020013991	snd1	98	84.134	Oryzias_latipes_hni
ENSMICG00000000097	SND1	98	84.134	ENSORLG00015012436	snd1	98	84.134	Oryzias_latipes_hsok
ENSMICG00000000097	SND1	100	83.004	ENSOMEG00000006406	snd1	98	84.228	Oryzias_melastigma
ENSMICG00000000097	SND1	100	99.013	ENSOGAG00000013356	SND1	100	98.242	Otolemur_garnettii
ENSMICG00000000097	SND1	97	96.045	ENSOARG00000002149	SND1	100	96.045	Ovis_aries
ENSMICG00000000097	SND1	100	99.231	ENSPPAG00000042947	SND1	100	99.231	Pan_paniscus
ENSMICG00000000097	SND1	100	99.011	ENSPPRG00000004494	SND1	100	99.011	Panthera_pardus
ENSMICG00000000097	SND1	100	98.901	ENSPTIG00000014214	SND1	100	98.901	Panthera_tigris_altaica
ENSMICG00000000097	SND1	100	99.231	ENSPTRG00000023911	SND1	100	99.231	Pan_troglodytes
ENSMICG00000000097	SND1	97	99.321	ENSPANG00000011997	SND1	99	99.321	Papio_anubis
ENSMICG00000000097	SND1	99	81.588	ENSPKIG00000023494	snd1	98	81.909	Paramormyrops_kingsleyae
ENSMICG00000000097	SND1	92	82.754	ENSPMGG00000003629	snd1	100	82.754	Periophthalmus_magnuspinnatus
ENSMICG00000000097	SND1	100	98.132	ENSPEMG00000010240	Snd1	100	98.132	Peromyscus_maniculatus_bairdii
ENSMICG00000000097	SND1	97	73.559	ENSPMAG00000007915	-	99	73.559	Petromyzon_marinus
ENSMICG00000000097	SND1	100	96.154	ENSPCIG00000011561	SND1	100	96.154	Phascolarctos_cinereus
ENSMICG00000000097	SND1	100	83.882	ENSPFOG00000001557	snd1	99	84.761	Poecilia_formosa
ENSMICG00000000097	SND1	100	83.882	ENSPLAG00000018459	snd1	96	84.761	Poecilia_latipinna
ENSMICG00000000097	SND1	100	84.320	ENSPMEG00000006803	snd1	99	85.206	Poecilia_mexicana
ENSMICG00000000097	SND1	100	83.991	ENSPREG00000002189	snd1	99	84.872	Poecilia_reticulata
ENSMICG00000000097	SND1	94	98.162	ENSPPYG00000017972	SND1	100	98.162	Pongo_abelii
ENSMICG00000000097	SND1	100	86.484	ENSPCAG00000011305	SND1	99	86.399	Procavia_capensis
ENSMICG00000000097	SND1	100	99.560	ENSPCOG00000026791	SND1	100	99.560	Propithecus_coquereli
ENSMICG00000000097	SND1	100	97.033	ENSPVAG00000013945	SND1	100	97.033	Pteropus_vampyrus
ENSMICG00000000097	SND1	99	83.077	ENSPNYG00000000932	snd1	99	84.076	Pundamilia_nyererei
ENSMICG00000000097	SND1	100	83.260	ENSPNAG00000001206	snd1	98	84.222	Pygocentrus_nattereri
ENSMICG00000000097	SND1	99	97.577	ENSRNOG00000031173	Snd1	99	97.577	Rattus_norvegicus
ENSMICG00000000097	SND1	73	99.436	ENSRBIG00000027782	-	93	99.620	Rhinopithecus_bieti
ENSMICG00000000097	SND1	100	99.341	ENSRROG00000033020	SND1	100	99.341	Rhinopithecus_roxellana
ENSMICG00000000097	SND1	100	99.121	ENSSBOG00000032461	SND1	100	99.121	Saimiri_boliviensis_boliviensis
ENSMICG00000000097	SND1	98	92.680	ENSSHAG00000015359	SND1	100	92.680	Sarcophilus_harrisii
ENSMICG00000000097	SND1	100	82.263	ENSSFOG00015001103	snd1	98	83.352	Scleropages_formosus
ENSMICG00000000097	SND1	98	83.893	ENSSMAG00000001932	snd1	93	83.630	Scophthalmus_maximus
ENSMICG00000000097	SND1	100	83.553	ENSSDUG00000002699	snd1	92	84.427	Seriola_dumerili
ENSMICG00000000097	SND1	100	76.316	ENSSLDG00000001950	snd1	98	77.086	Seriola_lalandi_dorsalis
ENSMICG00000000097	SND1	87	97.170	ENSSARG00000004877	SND1	92	97.170	Sorex_araneus
ENSMICG00000000097	SND1	73	87.826	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSMICG00000000097	SND1	76	84.772	ENSSPAG00000021398	snd1	96	86.911	Stegastes_partitus
ENSMICG00000000097	SND1	100	98.681	ENSSSCG00000016590	SND1	100	98.681	Sus_scrofa
ENSMICG00000000097	SND1	99	83.150	ENSTRUG00000014067	snd1	98	83.669	Takifugu_rubripes
ENSMICG00000000097	SND1	100	83.224	ENSTNIG00000011019	snd1	95	87.392	Tetraodon_nigroviridis
ENSMICG00000000097	SND1	93	93.396	ENSTBEG00000003999	SND1	100	93.396	Tupaia_belangeri
ENSMICG00000000097	SND1	100	94.286	ENSTTRG00000006059	SND1	100	94.286	Tursiops_truncatus
ENSMICG00000000097	SND1	71	90.390	ENSUAMG00000002820	-	86	90.323	Ursus_americanus
ENSMICG00000000097	SND1	92	98.669	ENSUAMG00000005604	-	93	98.669	Ursus_americanus
ENSMICG00000000097	SND1	100	98.791	ENSUMAG00000005960	SND1	100	98.791	Ursus_maritimus
ENSMICG00000000097	SND1	78	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSMICG00000000097	SND1	100	98.791	ENSVVUG00000007226	SND1	100	98.791	Vulpes_vulpes
ENSMICG00000000097	SND1	97	84.407	ENSXETG00000023043	snd1	100	84.325	Xenopus_tropicalis
ENSMICG00000000097	SND1	92	81.473	ENSXCOG00000013629	snd1	99	81.473	Xiphophorus_couchianus
ENSMICG00000000097	SND1	100	84.211	ENSXMAG00000011469	snd1	99	85.095	Xiphophorus_maculatus